MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-19-g0d52da4dfede) initialized Starting run at 06:38:05 UTC on 2022-11-18. Successfully read inputs file ... Castro git describe: 22.11-12-g3b5735e85 AMReX git describe: 22.11-19-g0d52da4df Microphysics git describe: 22.11-29-g4ce4d428 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01593849 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.376201302 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343239457 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.342672119 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343344137 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353445412 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.35008879 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.339598441 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.339243569 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.375379551 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331878864 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011492984 seconds Ending run at 06:38:09 UTC on 2022-11-18. Run time = 3.725231244 Run time without initialization = 3.5147115 Average number of zones advanced per microsecond: 0.746 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.722 ... 3.725 ... 3.725 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1295 2.4114 2.5141 67.49% Castro::do_advance_ctu() 10 0.08312 0.1862 0.4722 12.68% Gravity::make_radial_gravity() 21 0.3397 0.3519 0.3773 10.13% Castro::estTimeStep() 21 0.03079 0.08631 0.1376 3.69% Castro::initData() 1 0.04751 0.08601 0.1368 3.67% FabArray::ParallelCopy_finish() 41 0.04352 0.06224 0.127 3.41% FabArray::setVal() 143 0.05472 0.06682 0.07012 1.88% Castro::reset_internal_energy(Fab) 1008 0.04594 0.05003 0.05177 1.39% FabArray::ParallelCopy_nowait() 41 0.02821 0.0446 0.05001 1.34% StateData::FillBoundary(geom) 41 0.03418 0.04166 0.04643 1.25% Castro::normalize_species() 62 0.04053 0.04143 0.04267 1.15% FillPatchIterator::Initialize 41 0.02442 0.03612 0.04037 1.08% Gravity::interpolate_monopole_grav() 21 0.02574 0.02734 0.02795 0.75% Castro::construct_new_gravity_source() 10 0.02001 0.02296 0.02383 0.64% Castro::expand_state() 10 0.01013 0.01879 0.02201 0.59% Castro::computeTemp() 63 0.0176 0.01909 0.01972 0.53% Castro::initialize_do_advance() 10 0.01036 0.01762 0.01918 0.51% VisMF::Write(FabArray) 2 0.01354 0.01437 0.01875 0.50% MultiFab::Saxpy() 20 0.008852 0.01428 0.0163 0.44% Amr::writePlotFile() 2 0.008911 0.01311 0.0138 0.37% Gravity::get_new_grav_vector() 11 0.007431 0.01157 0.01295 0.35% FabArray::setDomainBndry() 41 0.004853 0.01037 0.0123 0.33% MultiFab::contains_nan() 20 0.009464 0.01091 0.01191 0.32% Castro::construct_old_gravity_source() 10 0.004945 0.01011 0.01178 0.32% Gravity::get_old_grav_vector() 10 0.005388 0.009295 0.01075 0.29% Castro::initialize_advance() 10 0.003268 0.008821 0.01065 0.29% Castro::initMFs() 1 0.006733 0.008449 0.009879 0.27% StateData::define() 4 0.005658 0.007046 0.008226 0.22% main() 1 0.00425 0.006823 0.007361 0.20% Castro::construct_new_source() 50 0.004834 0.006495 0.007204 0.19% Castro::enforce_min_density() 62 0.005481 0.006086 0.006577 0.18% Castro::swap_state_time_levels() 10 0.003326 0.004427 0.004684 0.13% Castro::finalize_advance() 10 0.003465 0.003556 0.003683 0.10% Amr::coarseTimeStep() 10 0.001846 0.00231 0.003132 0.08% Castro::buildMetrics() 1 0.0016 0.002008 0.002353 0.06% Castro::finalize_do_advance() 10 0.0006411 0.001418 0.001717 0.05% Amr::InitAmr() 1 0.000262 0.0003922 0.00062 0.02% Amr::timeStep() 10 0.000185 0.0002703 0.0005714 0.02% DistributionMapping::LeastUsedCPUs() 1 7.369e-06 0.0002854 0.0004469 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000298 0.0003056 0.0003213 0.01% Castro::clean_state() 62 0.0001546 0.0001755 0.0002082 0.01% StateDataPhysBCFunct::() 41 0.0001046 0.0001238 0.0001481 0.00% Castro::enforce_consistent_e() 1 8.249e-05 8.906e-05 0.0001049 0.00% FabArray::ParallelCopy() 41 7.678e-05 8.435e-05 9.201e-05 0.00% Castro::do_new_sources() 10 4.742e-05 7.141e-05 8.914e-05 0.00% Castro::construct_old_source() 50 3.372e-05 7.178e-05 8.638e-05 0.00% FillPatchSingleLevel 41 6.752e-05 7.482e-05 8.243e-05 0.00% Castro::Castro() 1 5.315e-05 6.672e-05 8.186e-05 0.00% Castro::do_old_sources() 10 4.032e-05 6.704e-05 8.022e-05 0.00% Amr::FinalizeInit() 1 3.715e-06 1.346e-05 7.487e-05 0.00% Castro::subcycle_advance_ctu() 10 4.634e-05 5.86e-05 7.211e-05 0.00% Amr::writeSmallPlotFile() 1 3.16e-05 5.866e-05 7.075e-05 0.00% FabArrayBase::getCPC() 41 5.451e-05 6.105e-05 7.015e-05 0.00% Castro::advance() 10 4.206e-05 5.32e-05 6.547e-05 0.00% Castro::construct_old_gravity() 10 3.304e-05 5.313e-05 6.494e-05 0.00% Castro::apply_source_to_state() 20 4.121e-05 5.188e-05 6.483e-05 0.00% Castro::construct_new_gravity() 10 3.872e-05 4.395e-05 4.751e-05 0.00% Amr::defBaseLevel() 1 2.274e-05 2.814e-05 4.357e-05 0.00% Castro::enforce_speed_limit() 62 2.615e-05 3.067e-05 3.623e-05 0.00% Castro::check_for_nan() 20 2.276e-05 2.568e-05 3.258e-05 0.00% FabArrayBase::CPC::define() 2 2.092e-05 2.616e-05 3.239e-05 0.00% Castro::post_timestep() 10 1.84e-05 2.354e-05 2.866e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.404e-05 1.935e-05 2.422e-05 0.00% Amr::initSubcycle() 1 8.056e-06 1.16e-05 1.426e-05 0.00% Gravity::swapTimeLevels() 10 7.46e-06 1.192e-05 1.413e-05 0.00% Gravity::set_mass_offset() 10 8.469e-06 1.084e-05 1.264e-05 0.00% Castro::create_source_corrector() 10 5.984e-06 1.049e-05 1.238e-05 0.00% Castro::computeNewDt() 9 7.736e-06 9.574e-06 1.187e-05 0.00% Castro::FluxRegCrseInit 10 5.383e-06 8.7e-06 1.073e-05 0.00% Amr::InitializeInit() 1 6.523e-06 8.086e-06 1.063e-05 0.00% Castro::retry_advance_ctu() 10 4.628e-06 5.962e-06 8.453e-06 0.00% Castro::post_regrid() 1 1.876e-06 3.405e-06 6.998e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.684e-06 4.708e-06 5.254e-06 0.00% Castro::computeInitialDt() 2 3.217e-06 3.957e-06 4.647e-06 0.00% Castro::post_init() 1 3.066e-06 3.617e-06 4.147e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.426e-06 2.794e-06 0.00% Amr::init() 1 1.93e-06 2.136e-06 2.315e-06 0.00% Amr::initialInit() 1 1.129e-06 1.682e-06 2.285e-06 0.00% DistributionMapping::Distribute() 1 8.78e-07 1.237e-06 1.719e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.722 3.725 3.725 100.00% Amr::coarseTimeStep() 10 3.496 3.496 3.496 93.84% Amr::timeStep() 10 3.483 3.484 3.484 93.53% Castro::advance() 10 3.467 3.467 3.468 93.08% Castro::subcycle_advance_ctu() 10 3.392 3.395 3.407 91.45% Castro::do_advance_ctu() 10 3.392 3.395 3.407 91.44% Castro::construct_ctu_hydro_source() 10 2.13 2.411 2.514 67.49% Gravity::make_radial_gravity() 21 0.3397 0.3519 0.3773 10.13% Gravity::get_new_grav_vector() 11 0.2277 0.2317 0.233 6.26% Castro::construct_old_gravity() 10 0.2002 0.21 0.2293 6.15% Gravity::get_old_grav_vector() 10 0.1993 0.2093 0.2287 6.14% FillPatchIterator::Initialize 41 0.1868 0.1954 0.2229 5.98% Amr::init() 1 0.2097 0.21 0.2101 5.64% Castro::construct_new_gravity() 10 0.2016 0.2046 0.2057 5.52% Amr::initialInit() 1 0.1936 0.1941 0.1943 5.22% FillPatchSingleLevel 41 0.1353 0.1489 0.1936 5.20% Castro::initialize_do_advance() 10 0.1663 0.1781 0.1842 4.94% Amr::InitializeInit() 1 0.06948 0.1096 0.1636 4.39% Amr::defBaseLevel() 1 0.06947 0.1096 0.1636 4.39% FabArray::ParallelCopy() 41 0.09303 0.107 0.1554 4.17% Castro::initData() 1 0.05159 0.08977 0.1405 3.77% Castro::estTimeStep() 21 0.03079 0.08631 0.1376 3.69% Castro::expand_state() 10 0.1218 0.1303 0.1341 3.60% FabArray::ParallelCopy_finish() 41 0.04352 0.06224 0.127 3.41% Amr::FinalizeInit() 1 0.03055 0.08448 0.1246 3.35% Castro::clean_state() 62 0.1093 0.1162 0.1198 3.21% Castro::computeInitialDt() 2 0.002148 0.05621 0.09645 2.59% Castro::initialize_advance() 10 0.05637 0.0686 0.07182 1.93% Castro::computeTemp() 63 0.06395 0.06942 0.07164 1.92% FabArray::setVal() 143 0.05472 0.06682 0.07012 1.88% Castro::do_new_sources() 10 0.05346 0.06297 0.0647 1.74% Castro::reset_internal_energy(MultiFab) 63 0.04626 0.05033 0.05207 1.40% Castro::reset_internal_energy(Fab) 1008 0.04594 0.05003 0.05177 1.39% FabArray::ParallelCopy_nowait() 41 0.02831 0.04468 0.05009 1.34% Castro::do_old_sources() 10 0.0323 0.04515 0.04888 1.31% StateDataPhysBCFunct::() 41 0.0343 0.04178 0.04657 1.25% StateData::FillBoundary(geom) 41 0.03418 0.04166 0.04643 1.25% Castro::normalize_species() 62 0.04053 0.04143 0.04267 1.15% Castro::construct_new_source() 50 0.02485 0.02946 0.0307 0.82% Castro::post_init() 1 0.02729 0.02782 0.02809 0.75% Gravity::interpolate_monopole_grav() 21 0.02574 0.02734 0.02795 0.75% Amr::writePlotFile() 2 0.02735 0.02748 0.02766 0.74% Castro::construct_new_gravity_source() 10 0.02001 0.02296 0.02383 0.64% VisMF::Write(FabArray) 2 0.01354 0.01437 0.01875 0.50% Castro::post_timestep() 10 0.01569 0.01604 0.01642 0.44% Castro::apply_source_to_state() 20 0.008893 0.01433 0.01637 0.44% MultiFab::Saxpy() 20 0.008852 0.01428 0.0163 0.44% Castro::Castro() 1 0.01001 0.01243 0.01458 0.39% FabArray::setDomainBndry() 41 0.004853 0.01037 0.0123 0.33% Castro::check_for_nan() 20 0.009488 0.01094 0.01193 0.32% MultiFab::contains_nan() 20 0.009464 0.01091 0.01191 0.32% Castro::construct_old_source() 50 0.004979 0.01018 0.01186 0.32% Castro::construct_old_gravity_source() 10 0.004945 0.01011 0.01178 0.32% Castro::initMFs() 1 0.006733 0.008449 0.009879 0.27% Castro::computeNewDt() 9 0.008743 0.008751 0.008756 0.24% AmrLevel::AmrLevel(dm) 1 0.005672 0.007066 0.008245 0.22% StateData::define() 4 0.005658 0.007046 0.008226 0.22% Castro::enforce_min_density() 62 0.005481 0.006086 0.006577 0.18% Castro::swap_state_time_levels() 10 0.003326 0.004427 0.004684 0.13% Castro::finalize_advance() 10 0.003476 0.003567 0.003691 0.10% Castro::buildMetrics() 1 0.00171 0.002175 0.002576 0.07% Castro::post_regrid() 1 0.001502 0.001629 0.002078 0.06% Castro::finalize_do_advance() 10 0.0006411 0.001418 0.001717 0.05% Amr::InitAmr() 1 0.00027 0.0004038 0.0006343 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.231e-05 0.0002913 0.0004532 0.01% DistributionMapping::LeastUsedCPUs() 1 7.369e-06 0.0002854 0.0004469 0.01% Castro::enforce_consistent_e() 1 8.249e-05 8.906e-05 0.0001049 0.00% FabArrayBase::getCPC() 41 7.997e-05 8.722e-05 9.969e-05 0.00% Amr::writeSmallPlotFile() 1 3.16e-05 5.866e-05 7.075e-05 0.00% Castro::enforce_speed_limit() 62 2.615e-05 3.067e-05 3.623e-05 0.00% FabArrayBase::CPC::define() 2 2.092e-05 2.616e-05 3.239e-05 0.00% Amr::initSubcycle() 1 8.056e-06 1.16e-05 1.426e-05 0.00% Gravity::swapTimeLevels() 10 7.46e-06 1.192e-05 1.413e-05 0.00% Gravity::set_mass_offset() 10 8.469e-06 1.084e-05 1.264e-05 0.00% Castro::create_source_corrector() 10 5.984e-06 1.049e-05 1.238e-05 0.00% Castro::FluxRegCrseInit 10 5.383e-06 8.7e-06 1.073e-05 0.00% Castro::retry_advance_ctu() 10 4.628e-06 5.962e-06 8.453e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.426e-06 2.794e-06 0.00% DistributionMapping::Distribute() 1 8.78e-07 1.237e-06 1.719e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-19-g0d52da4dfede) finalized