MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-19-g0d52da4dfede) initialized Starting run at 22:44:18 UTC on 2022-11-19. Successfully read inputs file ... Castro git describe: 22.11-14-g9fe0b98b0 AMReX git describe: 22.11-19-g0d52da4df Microphysics git describe: 22.11-33-g306cb5f9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018398233 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365476253 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.346058459 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343351764 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344252434 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354459414 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353264534 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.339105573 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.339997102 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.337923738 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.33994142 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010309363 seconds Ending run at 22:44:22 UTC on 2022-11-19. Run time = 3.674718211 Run time without initialization = 3.481844789 Average number of zones advanced per microsecond: 0.753 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.672 ... 3.674 ... 3.675 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1578 2.4247 2.5220 68.63% Castro::do_advance_ctu() 10 0.03453 0.1326 0.4028 10.96% Gravity::make_radial_gravity() 21 0.342 0.3564 0.3804 10.35% FabArray::ParallelCopy_finish() 41 0.04354 0.06132 0.118 3.21% Castro::initData() 1 0.03983 0.08063 0.1178 3.21% Castro::estTimeStep() 21 0.03348 0.07424 0.1143 3.11% FabArray::setVal() 143 0.06058 0.06859 0.07173 1.95% Castro::reset_internal_energy(Fab) 1008 0.04827 0.05056 0.05159 1.40% FabArray::ParallelCopy_nowait() 41 0.02899 0.04501 0.05041 1.37% StateData::FillBoundary(geom) 41 0.03746 0.04192 0.04547 1.24% Castro::normalize_species() 62 0.04069 0.04184 0.04271 1.16% FillPatchIterator::Initialize 41 0.02487 0.03649 0.04091 1.11% Gravity::interpolate_monopole_grav() 21 0.0268 0.02766 0.02818 0.77% Castro::construct_new_gravity_source() 10 0.02016 0.02295 0.02441 0.66% Castro::expand_state() 10 0.009831 0.01853 0.02209 0.60% Castro::computeTemp() 63 0.01834 0.01924 0.01983 0.54% Castro::initialize_do_advance() 10 0.01024 0.01755 0.01962 0.53% VisMF::Write(FabArray) 2 0.01317 0.01381 0.01661 0.45% MultiFab::Saxpy() 20 0.008655 0.01414 0.01599 0.44% Amr::writePlotFile() 2 0.01233 0.01385 0.01483 0.40% Gravity::get_new_grav_vector() 11 0.007629 0.01151 0.01298 0.35% MultiFab::contains_nan() 20 0.009705 0.01111 0.01268 0.35% FabArray::setDomainBndry() 41 0.004904 0.01034 0.01235 0.34% Castro::construct_old_gravity_source() 10 0.004902 0.01003 0.01174 0.32% Castro::initialize_advance() 10 0.006626 0.009965 0.01132 0.31% Gravity::get_old_grav_vector() 10 0.005692 0.009482 0.01089 0.30% Castro::initMFs() 1 0.006637 0.007754 0.0103 0.28% StateData::define() 4 0.005652 0.006385 0.008141 0.22% Castro::construct_new_source() 50 0.004905 0.006497 0.007074 0.19% main() 1 0.004311 0.006195 0.007033 0.19% Castro::enforce_min_density() 62 0.005276 0.006099 0.006532 0.18% Castro::swap_state_time_levels() 10 0.003674 0.004441 0.004644 0.13% Amr::coarseTimeStep() 10 0.001767 0.00266 0.004274 0.12% Castro::finalize_advance() 10 0.003433 0.00351 0.003632 0.10% Castro::buildMetrics() 1 0.001593 0.001812 0.002338 0.06% Castro::finalize_do_advance() 10 0.0006402 0.001525 0.001913 0.05% Amr::InitAmr() 1 0.0002991 0.0003744 0.0005081 0.01% Amr::timeStep() 10 0.0001966 0.0002635 0.0004351 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002953 0.0003028 0.0003248 0.01% DistributionMapping::LeastUsedCPUs() 1 6.236e-06 0.0001697 0.0002583 0.01% Castro::clean_state() 62 0.0001463 0.0001786 0.0002094 0.01% StateDataPhysBCFunct::() 41 9.06e-05 0.0001386 0.0001627 0.00% Castro::enforce_consistent_e() 1 8.457e-05 9.126e-05 0.0001138 0.00% Castro::construct_old_source() 50 3.846e-05 7.441e-05 9.7e-05 0.00% Castro::do_new_sources() 10 3.918e-05 7.309e-05 9.434e-05 0.00% FabArray::ParallelCopy() 41 7.4e-05 8.555e-05 9.32e-05 0.00% FillPatchSingleLevel 41 6.588e-05 7.342e-05 8.832e-05 0.00% Castro::do_old_sources() 10 3.86e-05 6.818e-05 8.316e-05 0.00% Castro::subcycle_advance_ctu() 10 3.862e-05 5.537e-05 7.519e-05 0.00% Amr::FinalizeInit() 1 3.756e-06 1.312e-05 7.286e-05 0.00% Castro::Castro() 1 5.112e-05 6.455e-05 7.13e-05 0.00% Amr::writeSmallPlotFile() 1 2.47e-05 5.717e-05 6.933e-05 0.00% Castro::construct_old_gravity() 10 3.652e-05 5.533e-05 6.588e-05 0.00% Castro::advance() 10 3.892e-05 5.333e-05 6.398e-05 0.00% FabArrayBase::getCPC() 41 5.244e-05 5.802e-05 6.364e-05 0.00% Castro::apply_source_to_state() 20 3.43e-05 4.98e-05 5.843e-05 0.00% Castro::construct_new_gravity() 10 3.957e-05 4.445e-05 5.083e-05 0.00% FabArrayBase::CPC::define() 2 2.07e-05 2.762e-05 4.359e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.617e-05 2.487e-05 3.848e-05 0.00% Castro::enforce_speed_limit() 62 2.784e-05 3.198e-05 3.47e-05 0.00% Amr::defBaseLevel() 1 2.323e-05 2.739e-05 3.082e-05 0.00% Castro::check_for_nan() 20 1.989e-05 2.485e-05 3.052e-05 0.00% Castro::post_timestep() 10 1.639e-05 2.368e-05 3.008e-05 0.00% Gravity::swapTimeLevels() 10 6.147e-06 1.288e-05 1.679e-05 0.00% Amr::initSubcycle() 1 7.948e-06 1.007e-05 1.486e-05 0.00% Castro::create_source_corrector() 10 6.086e-06 1.091e-05 1.379e-05 0.00% Castro::computeNewDt() 9 8.031e-06 1.013e-05 1.199e-05 0.00% Castro::FluxRegCrseInit 10 6.174e-06 9.016e-06 1.151e-05 0.00% Gravity::set_mass_offset() 10 7.568e-06 9.945e-06 1.148e-05 0.00% Amr::InitializeInit() 1 6.276e-06 8.202e-06 1.061e-05 0.00% Castro::post_init() 1 3.489e-06 4.95e-06 8.552e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.04e-06 5.062e-06 8.079e-06 0.00% Castro::retry_advance_ctu() 10 3.586e-06 5.871e-06 7.348e-06 0.00% DistributionMapping::Distribute() 1 9.08e-07 1.563e-06 4.728e-06 0.00% Castro::post_regrid() 1 1.765e-06 2.935e-06 4.293e-06 0.00% Castro::computeInitialDt() 2 2.845e-06 3.622e-06 4.214e-06 0.00% Castro::FluxRegFineAdd() 10 1.944e-06 2.307e-06 3.026e-06 0.00% Amr::init() 1 1.92e-06 2.093e-06 2.373e-06 0.00% Amr::initialInit() 1 1.243e-06 1.405e-06 1.572e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.672 3.674 3.675 100.00% Amr::coarseTimeStep() 10 3.465 3.465 3.465 94.28% Amr::timeStep() 10 3.45 3.452 3.452 93.95% Castro::advance() 10 3.434 3.435 3.435 93.49% Castro::subcycle_advance_ctu() 10 3.358 3.36 3.367 91.62% Castro::do_advance_ctu() 10 3.358 3.36 3.367 91.62% Castro::construct_ctu_hydro_source() 10 2.158 2.425 2.522 68.63% Gravity::make_radial_gravity() 21 0.342 0.3564 0.3804 10.35% Gravity::get_new_grav_vector() 11 0.2291 0.2341 0.2368 6.44% Castro::construct_old_gravity() 10 0.2012 0.214 0.2314 6.30% Gravity::get_old_grav_vector() 10 0.2002 0.2132 0.2309 6.28% FillPatchIterator::Initialize 41 0.1884 0.1955 0.2159 5.88% Castro::construct_new_gravity() 10 0.2006 0.2054 0.2074 5.64% Amr::init() 1 0.1922 0.1924 0.1925 5.24% Castro::initialize_do_advance() 10 0.1645 0.1775 0.1859 5.06% FillPatchSingleLevel 41 0.1361 0.1486 0.1852 5.04% Amr::initialInit() 1 0.1737 0.1751 0.1759 4.79% FabArray::ParallelCopy() 41 0.09315 0.1065 0.1472 4.00% Amr::InitializeInit() 1 0.06029 0.1028 0.1429 3.89% Amr::defBaseLevel() 1 0.06028 0.1027 0.1429 3.89% Castro::expand_state() 10 0.1193 0.1296 0.1364 3.71% Castro::initData() 1 0.04367 0.08448 0.1219 3.32% Castro::clean_state() 62 0.1121 0.1173 0.1195 3.25% FabArray::ParallelCopy_finish() 41 0.04354 0.06132 0.118 3.21% Amr::FinalizeInit() 1 0.03258 0.07233 0.1153 3.14% Castro::estTimeStep() 21 0.03348 0.07424 0.1143 3.11% Castro::computeInitialDt() 2 0.002236 0.04254 0.0851 2.32% Castro::initialize_advance() 10 0.06377 0.07126 0.07373 2.01% FabArray::setVal() 143 0.06058 0.06859 0.07173 1.95% Castro::computeTemp() 63 0.06691 0.0701 0.07145 1.94% Castro::do_new_sources() 10 0.05454 0.06312 0.06532 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04856 0.05086 0.0519 1.41% Castro::reset_internal_energy(Fab) 1008 0.04827 0.05056 0.05159 1.40% FabArray::ParallelCopy_nowait() 41 0.02909 0.0451 0.0505 1.37% Castro::do_old_sources() 10 0.03311 0.04519 0.04877 1.33% StateDataPhysBCFunct::() 41 0.03762 0.04206 0.04563 1.24% StateData::FillBoundary(geom) 41 0.03746 0.04192 0.04547 1.24% Castro::normalize_species() 62 0.04069 0.04184 0.04271 1.16% Castro::construct_new_source() 50 0.02506 0.02945 0.03116 0.85% Castro::post_init() 1 0.02788 0.02945 0.03012 0.82% Amr::writePlotFile() 2 0.02697 0.02765 0.02894 0.79% Gravity::interpolate_monopole_grav() 21 0.0268 0.02766 0.02818 0.77% Castro::construct_new_gravity_source() 10 0.02016 0.02295 0.02441 0.66% Castro::post_timestep() 10 0.01531 0.01614 0.01695 0.46% VisMF::Write(FabArray) 2 0.01317 0.01381 0.01661 0.45% Castro::apply_source_to_state() 20 0.008689 0.01419 0.01604 0.44% MultiFab::Saxpy() 20 0.008655 0.01414 0.01599 0.44% Castro::Castro() 1 0.01052 0.01165 0.01442 0.39% Castro::check_for_nan() 20 0.009727 0.01114 0.01271 0.35% MultiFab::contains_nan() 20 0.009705 0.01111 0.01268 0.35% FabArray::setDomainBndry() 41 0.004904 0.01034 0.01235 0.34% Castro::construct_old_source() 50 0.00494 0.0101 0.01184 0.32% Castro::construct_old_gravity_source() 10 0.004902 0.01003 0.01174 0.32% Castro::initMFs() 1 0.006637 0.007754 0.0103 0.28% Castro::computeNewDt() 9 0.00903 0.009045 0.009058 0.25% AmrLevel::AmrLevel(dm) 1 0.005682 0.00641 0.008179 0.22% StateData::define() 4 0.005652 0.006385 0.008141 0.22% Castro::enforce_min_density() 62 0.005276 0.006099 0.006532 0.18% Castro::swap_state_time_levels() 10 0.003674 0.004441 0.004644 0.13% Castro::finalize_advance() 10 0.003446 0.003521 0.003641 0.10% Castro::buildMetrics() 1 0.001708 0.001956 0.002555 0.07% Castro::finalize_do_advance() 10 0.0006402 0.001525 0.001913 0.05% Castro::post_regrid() 1 0.001514 0.001618 0.001844 0.05% Amr::InitAmr() 1 0.000308 0.0003845 0.000523 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.151e-05 0.0001763 0.0002658 0.01% DistributionMapping::LeastUsedCPUs() 1 6.236e-06 0.0001697 0.0002583 0.01% Castro::enforce_consistent_e() 1 8.457e-05 9.126e-05 0.0001138 0.00% FabArrayBase::getCPC() 41 7.615e-05 8.565e-05 0.0001 0.00% Amr::writeSmallPlotFile() 1 2.47e-05 5.717e-05 6.933e-05 0.00% FabArrayBase::CPC::define() 2 2.07e-05 2.762e-05 4.359e-05 0.00% Castro::enforce_speed_limit() 62 2.784e-05 3.198e-05 3.47e-05 0.00% Gravity::swapTimeLevels() 10 6.147e-06 1.288e-05 1.679e-05 0.00% Amr::initSubcycle() 1 7.948e-06 1.007e-05 1.486e-05 0.00% Castro::create_source_corrector() 10 6.086e-06 1.091e-05 1.379e-05 0.00% Castro::FluxRegCrseInit 10 6.174e-06 9.016e-06 1.151e-05 0.00% Gravity::set_mass_offset() 10 7.568e-06 9.945e-06 1.148e-05 0.00% Castro::retry_advance_ctu() 10 3.586e-06 5.871e-06 7.348e-06 0.00% DistributionMapping::Distribute() 1 9.08e-07 1.563e-06 4.728e-06 0.00% Castro::FluxRegFineAdd() 10 1.944e-06 2.307e-06 3.026e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-19-g0d52da4dfede) finalized