MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-33-g4d6413c45fa0) initialized Starting run at 06:40:41 UTC on 2022-11-24. Successfully read inputs file ... Castro git describe: 22.11-14-g129e2797f AMReX git describe: 22.11-33-g4d6413c45 Microphysics git describe: 22.11-41-g63248ba9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017096635 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35710174 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343232019 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343781985 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343741085 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35382969 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351972443 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.338287523 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.339096021 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.339355619 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.34050937 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010513408 seconds Ending run at 06:40:44 UTC on 2022-11-24. Run time = 3.651115405 Run time without initialization = 3.469446151 Average number of zones advanced per microsecond: 0.756 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.648 ... 3.65 ... 3.651 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1049 2.4090 2.5176 68.95% Castro::do_advance_ctu() 10 0.004902 0.1207 0.4343 11.90% Gravity::make_radial_gravity() 21 0.3169 0.3314 0.3657 10.02% FabArray::ParallelCopy_finish() 41 0.04226 0.06247 0.1233 3.38% Castro::initData() 1 0.04106 0.0782 0.1139 3.12% Castro::estTimeStep() 21 0.03036 0.06904 0.1054 2.89% amrex::Copy() 193 0.0496 0.07793 0.08759 2.40% FabArray::setVal() 143 0.06103 0.06952 0.07246 1.98% Castro::reset_internal_energy(Fab) 1008 0.04641 0.04995 0.05237 1.43% FabArray::ParallelCopy_nowait() 41 0.0283 0.04468 0.04999 1.37% StateData::FillBoundary(geom) 41 0.03533 0.04146 0.04659 1.28% Castro::normalize_species() 62 0.03918 0.04126 0.04234 1.16% FillPatchIterator::Initialize 41 0.02447 0.03599 0.04006 1.10% Gravity::interpolate_monopole_grav() 21 0.02587 0.02739 0.02795 0.77% Castro::construct_new_gravity_source() 10 0.01997 0.02283 0.02365 0.65% Castro::computeTemp() 63 0.01781 0.01921 0.02007 0.55% Castro::initialize_do_advance() 10 0.0094 0.0173 0.01929 0.53% FabArray::Saxpy() 20 0.008641 0.01425 0.01599 0.44% VisMF::Write(FabArray) 2 0.01302 0.01352 0.01597 0.44% MultiFab::contains_nan() 20 0.0099 0.01145 0.01274 0.35% FabArray::setDomainBndry() 41 0.005015 0.01044 0.0123 0.34% Castro::construct_old_gravity_source() 10 0.004872 0.01003 0.01175 0.32% Castro::initialize_advance() 10 0.00781 0.01012 0.01141 0.31% Amr::writePlotFile() 2 0.008574 0.01018 0.01128 0.31% Castro::initMFs() 1 0.006663 0.006955 0.008833 0.24% Castro::enforce_min_density() 62 0.005865 0.00677 0.007359 0.20% main() 1 0.004397 0.006313 0.007269 0.20% Castro::construct_new_source() 50 0.004733 0.006449 0.007044 0.19% StateData::define() 4 0.005507 0.005627 0.006306 0.17% Castro::swap_state_time_levels() 10 0.003256 0.004295 0.004644 0.13% Gravity::get_new_grav_vector() 11 0.002619 0.003946 0.00443 0.12% Amr::coarseTimeStep() 10 0.001686 0.002428 0.004232 0.12% Gravity::get_old_grav_vector() 10 0.001372 0.002606 0.003237 0.09% Castro::buildMetrics() 1 0.001551 0.001604 0.001828 0.05% Castro::finalize_do_advance() 10 0.0006492 0.001496 0.001828 0.05% Castro::expand_state() 10 0.0006168 0.0008546 0.001024 0.03% Amr::timeStep() 10 0.000191 0.0002569 0.0004928 0.01% Amr::InitAmr() 1 0.000261 0.0002918 0.0004076 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002852 0.0002993 0.0003204 0.01% Castro::clean_state() 62 0.0001509 0.00018 0.0002173 0.01% DistributionMapping::LeastUsedCPUs() 1 8.117e-06 0.00013 0.00015 0.00% StateDataPhysBCFunct::() 41 8.173e-05 0.0001084 0.0001312 0.00% Castro::construct_old_source() 50 2.943e-05 7.384e-05 0.0001087 0.00% Castro::finalize_advance() 10 6.935e-05 9.327e-05 0.0001064 0.00% FabArray::ParallelCopy() 41 6.42e-05 8.138e-05 9.623e-05 0.00% Castro::enforce_consistent_e() 1 7.775e-05 8.474e-05 9.192e-05 0.00% Castro::do_old_sources() 10 3.612e-05 6.844e-05 8.838e-05 0.00% Castro::do_new_sources() 10 4.233e-05 7.207e-05 8.566e-05 0.00% Castro::Castro() 1 5.218e-05 6.946e-05 8.525e-05 0.00% FillPatchSingleLevel 41 6.09e-05 7.359e-05 8.329e-05 0.00% Castro::subcycle_advance_ctu() 10 4.024e-05 5.627e-05 7.255e-05 0.00% Amr::writeSmallPlotFile() 1 6.064e-05 6.75e-05 7.161e-05 0.00% Amr::FinalizeInit() 1 3.421e-06 1.402e-05 7.002e-05 0.00% Castro::advance() 10 2.899e-05 4.796e-05 6.515e-05 0.00% FabArrayBase::getCPC() 41 4.415e-05 5.436e-05 6.511e-05 0.00% Castro::construct_old_gravity() 10 2.9e-05 4.634e-05 5.726e-05 0.00% Castro::apply_source_to_state() 20 3.261e-05 4.758e-05 5.555e-05 0.00% Castro::construct_new_gravity() 10 3.186e-05 4.349e-05 5.032e-05 0.00% FabArrayBase::CPC::define() 2 2.014e-05 2.598e-05 4.02e-05 0.00% Castro::check_for_nan() 20 1.771e-05 2.462e-05 3.857e-05 0.00% Amr::defBaseLevel() 1 2.041e-05 2.776e-05 3.443e-05 0.00% Castro::post_timestep() 10 1.635e-05 2.551e-05 3.129e-05 0.00% Castro::enforce_speed_limit() 62 2.551e-05 2.868e-05 3.108e-05 0.00% Gravity::swapTimeLevels() 10 5.662e-06 1.335e-05 1.855e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.179e-06 9.977e-06 1.397e-05 0.00% Castro::create_source_corrector() 10 6.447e-06 1.038e-05 1.368e-05 0.00% Gravity::set_mass_offset() 10 8.393e-06 1.147e-05 1.348e-05 0.00% Castro::computeNewDt() 9 7.683e-06 1.009e-05 1.22e-05 0.00% Castro::post_init() 1 3.064e-06 4.689e-06 1.149e-05 0.00% Castro::FluxRegCrseInit 10 6.046e-06 8.057e-06 9.794e-06 0.00% Amr::initSubcycle() 1 7.855e-06 8.462e-06 9.281e-06 0.00% Castro::retry_advance_ctu() 10 4.179e-06 5.924e-06 7.521e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.282e-06 5.215e-06 6.48e-06 0.00% Amr::InitializeInit() 1 1.916e-06 2.55e-06 5.297e-06 0.00% Castro::computeInitialDt() 2 3.111e-06 3.918e-06 5.171e-06 0.00% Castro::post_regrid() 1 1.887e-06 2.835e-06 3.707e-06 0.00% Castro::FluxRegFineAdd() 10 1.782e-06 2.479e-06 3.637e-06 0.00% Amr::init() 1 1.724e-06 2.002e-06 2.26e-06 0.00% DistributionMapping::Distribute() 1 9.64e-07 1.399e-06 1.676e-06 0.00% Amr::initialInit() 1 1.107e-06 1.286e-06 1.469e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.648 3.65 3.651 100.00% Amr::coarseTimeStep() 10 3.452 3.452 3.452 94.54% Amr::timeStep() 10 3.437 3.439 3.44 94.22% Castro::advance() 10 3.422 3.423 3.423 93.76% Castro::subcycle_advance_ctu() 10 3.346 3.348 3.355 91.89% Castro::do_advance_ctu() 10 3.346 3.348 3.355 91.89% Castro::construct_ctu_hydro_source() 10 2.105 2.409 2.518 68.95% Gravity::make_radial_gravity() 21 0.3366 0.3504 0.377 10.33% Gravity::get_new_grav_vector() 11 0.2268 0.2307 0.2326 6.37% Castro::construct_old_gravity() 10 0.1983 0.2102 0.2296 6.29% Gravity::get_old_grav_vector() 10 0.1974 0.2094 0.2291 6.28% FillPatchIterator::Initialize 41 0.1849 0.1954 0.2167 5.94% Castro::construct_new_gravity() 10 0.2001 0.2039 0.2052 5.62% FillPatchSingleLevel 41 0.1333 0.149 0.1872 5.13% Castro::initialize_do_advance() 10 0.1649 0.1772 0.1846 5.06% Amr::init() 1 0.1811 0.1812 0.1813 4.96% Amr::initialInit() 1 0.1639 0.1651 0.1657 4.54% FabArray::ParallelCopy() 41 0.0914 0.1073 0.1518 4.16% Amr::InitializeInit() 1 0.06167 0.09929 0.135 3.70% Amr::defBaseLevel() 1 0.06166 0.09929 0.135 3.70% Castro::expand_state() 10 0.1227 0.1296 0.1348 3.69% FabArray::ParallelCopy_finish() 41 0.04226 0.06247 0.1233 3.38% Castro::clean_state() 62 0.1088 0.1168 0.1197 3.28% Castro::initData() 1 0.045 0.08218 0.118 3.23% Castro::estTimeStep() 21 0.03036 0.06904 0.1054 2.89% Amr::FinalizeInit() 1 0.03069 0.06582 0.1022 2.80% amrex::Copy() 193 0.0496 0.07793 0.08759 2.40% Castro::computeInitialDt() 2 0.002057 0.0377 0.0752 2.06% Castro::initialize_advance() 10 0.06362 0.0712 0.07364 2.02% Castro::computeTemp() 63 0.0645 0.06946 0.07275 1.99% FabArray::setVal() 143 0.06103 0.06952 0.07246 1.98% Castro::do_new_sources() 10 0.05357 0.06301 0.0649 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04669 0.05025 0.05268 1.44% Castro::reset_internal_energy(Fab) 1008 0.04641 0.04995 0.05237 1.43% FabArray::ParallelCopy_nowait() 41 0.0284 0.04476 0.05006 1.37% Castro::do_old_sources() 10 0.03244 0.04511 0.04893 1.34% StateDataPhysBCFunct::() 41 0.03541 0.04157 0.04671 1.28% StateData::FillBoundary(geom) 41 0.03533 0.04146 0.04659 1.28% Castro::normalize_species() 62 0.03918 0.04126 0.04234 1.16% Castro::construct_new_source() 50 0.02471 0.02928 0.03062 0.84% Castro::post_init() 1 0.02639 0.02756 0.02818 0.77% Gravity::interpolate_monopole_grav() 21 0.02587 0.02739 0.02795 0.77% Amr::writePlotFile() 2 0.02614 0.02671 0.02784 0.76% Castro::construct_new_gravity_source() 10 0.01997 0.02283 0.02365 0.65% Castro::post_timestep() 10 0.01461 0.016 0.01653 0.45% Castro::apply_source_to_state() 20 0.008674 0.01429 0.01605 0.44% FabArray::Saxpy() 20 0.008641 0.01425 0.01599 0.44% VisMF::Write(FabArray) 2 0.01302 0.01352 0.01597 0.44% Castro::check_for_nan() 20 0.009918 0.01147 0.01276 0.35% MultiFab::contains_nan() 20 0.0099 0.01145 0.01274 0.35% FabArray::setDomainBndry() 41 0.005015 0.01044 0.0123 0.34% Castro::Castro() 1 0.01111 0.0113 0.01222 0.33% Castro::construct_old_source() 50 0.004901 0.01011 0.01186 0.32% Castro::construct_old_gravity_source() 10 0.004872 0.01003 0.01175 0.32% Castro::computeNewDt() 9 0.008878 0.008888 0.008894 0.24% Castro::initMFs() 1 0.006663 0.006955 0.008833 0.24% Castro::enforce_min_density() 62 0.005865 0.00677 0.007359 0.20% AmrLevel::AmrLevel(dm) 1 0.005516 0.005637 0.00632 0.17% StateData::define() 4 0.005507 0.005627 0.006306 0.17% Castro::swap_state_time_levels() 10 0.003256 0.004295 0.004644 0.13% Castro::finalize_advance() 10 0.003459 0.003531 0.00365 0.10% Castro::buildMetrics() 1 0.001675 0.001739 0.00199 0.05% Castro::finalize_do_advance() 10 0.0006492 0.001496 0.001828 0.05% Castro::post_regrid() 1 0.001576 0.001628 0.001696 0.05% Amr::InitAmr() 1 0.0002692 0.0003003 0.0004159 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.236e-05 0.0001366 0.0001576 0.00% DistributionMapping::LeastUsedCPUs() 1 8.117e-06 0.00013 0.00015 0.00% FabArrayBase::getCPC() 41 7.038e-05 8.034e-05 0.0001053 0.00% Castro::enforce_consistent_e() 1 7.775e-05 8.474e-05 9.192e-05 0.00% Amr::writeSmallPlotFile() 1 6.064e-05 6.75e-05 7.161e-05 0.00% FabArrayBase::CPC::define() 2 2.014e-05 2.598e-05 4.02e-05 0.00% Castro::enforce_speed_limit() 62 2.551e-05 2.868e-05 3.108e-05 0.00% Gravity::swapTimeLevels() 10 5.662e-06 1.335e-05 1.855e-05 0.00% Castro::create_source_corrector() 10 6.447e-06 1.038e-05 1.368e-05 0.00% Gravity::set_mass_offset() 10 8.393e-06 1.147e-05 1.348e-05 0.00% Castro::FluxRegCrseInit 10 6.046e-06 8.057e-06 9.794e-06 0.00% Amr::initSubcycle() 1 7.855e-06 8.462e-06 9.281e-06 0.00% Castro::retry_advance_ctu() 10 4.179e-06 5.924e-06 7.521e-06 0.00% Castro::FluxRegFineAdd() 10 1.782e-06 2.479e-06 3.637e-06 0.00% DistributionMapping::Distribute() 1 9.64e-07 1.399e-06 1.676e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-33-g4d6413c45fa0) finalized