MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-33-g4d6413c45fa0) initialized Starting run at 06:40:21 UTC on 2022-11-25. Successfully read inputs file ... Castro git describe: 22.11-17-g49ca139a0 AMReX git describe: 22.11-33-g4d6413c45 Microphysics git describe: 22.11-41-g63248ba9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015635083 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358704263 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345609502 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343216768 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343482788 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354473712 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349826012 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.339853846 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.340315232 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.339273941 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.340433828 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010465728 seconds Ending run at 06:40:25 UTC on 2022-11-25. Run time = 3.66565165 Run time without initialization = 3.473671663 Average number of zones advanced per microsecond: 0.755 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.663 ... 3.665 ... 3.666 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0926 2.4078 2.5206 68.76% Castro::do_advance_ctu() 10 0.005356 0.122 0.4464 12.18% Gravity::make_radial_gravity() 21 0.3188 0.3324 0.3632 9.91% Castro::estTimeStep() 21 0.03111 0.07938 0.1305 3.56% Castro::initData() 1 0.0397 0.07968 0.1249 3.41% FabArray::ParallelCopy_finish() 41 0.04357 0.06075 0.116 3.16% amrex::Copy() 193 0.05196 0.07872 0.08864 2.42% FabArray::setVal() 143 0.06326 0.07051 0.07306 1.99% Castro::reset_internal_energy(Fab) 1008 0.04729 0.05 0.05142 1.40% FabArray::ParallelCopy_nowait() 41 0.02873 0.04502 0.05064 1.38% StateData::FillBoundary(geom) 41 0.03507 0.04162 0.04642 1.27% Castro::normalize_species() 62 0.03844 0.04097 0.042 1.15% FillPatchIterator::Initialize 41 0.02395 0.03631 0.04084 1.11% Gravity::interpolate_monopole_grav() 21 0.02587 0.02722 0.02773 0.76% Castro::construct_new_gravity_source() 10 0.02005 0.02288 0.02395 0.65% Castro::initialize_do_advance() 10 0.009564 0.01749 0.01983 0.54% Castro::computeTemp() 63 0.01727 0.01906 0.01977 0.54% FabArray::Saxpy() 20 0.01055 0.01465 0.01617 0.44% VisMF::Write(FabArray) 2 0.01241 0.01304 0.0158 0.43% FabArray::setDomainBndry() 41 0.004942 0.01042 0.01246 0.34% MultiFab::contains_nan() 20 0.009968 0.01104 0.0119 0.32% Castro::construct_old_gravity_source() 10 0.004935 0.0103 0.01184 0.32% Castro::initialize_advance() 10 0.01061 0.01085 0.01167 0.32% Amr::writePlotFile() 2 0.007072 0.01002 0.01125 0.31% Castro::initMFs() 1 0.006789 0.007127 0.008802 0.24% main() 1 0.004369 0.00647 0.007324 0.20% Castro::construct_new_source() 50 0.00484 0.006528 0.007175 0.20% Castro::enforce_min_density() 62 0.005559 0.006146 0.006593 0.18% StateData::define() 4 0.005573 0.00575 0.006447 0.18% Amr::coarseTimeStep() 10 0.001719 0.002662 0.005053 0.14% Castro::swap_state_time_levels() 10 0.003477 0.004587 0.004816 0.13% Gravity::get_new_grav_vector() 11 0.002672 0.003952 0.004425 0.12% Gravity::get_old_grav_vector() 10 0.001439 0.002672 0.003229 0.09% Castro::finalize_do_advance() 10 0.0005915 0.001729 0.002125 0.06% Castro::buildMetrics() 1 0.001609 0.001663 0.001866 0.05% Castro::expand_state() 10 0.0005941 0.0009238 0.001096 0.03% Amr::timeStep() 10 0.0001793 0.0002383 0.0004275 0.01% Amr::InitAmr() 1 0.0002605 0.0003001 0.0003817 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002709 0.0002862 0.0003035 0.01% Castro::clean_state() 62 0.0001531 0.0001728 0.0002029 0.01% DistributionMapping::LeastUsedCPUs() 1 1.766e-05 0.000118 0.0001676 0.00% StateDataPhysBCFunct::() 41 9.875e-05 0.000113 0.0001255 0.00% Castro::finalize_advance() 10 7.653e-05 9.593e-05 0.0001085 0.00% Castro::enforce_consistent_e() 1 8.349e-05 9.067e-05 0.0001026 0.00% Castro::construct_old_source() 50 4.17e-05 7.692e-05 9.722e-05 0.00% FillPatchSingleLevel 41 7.227e-05 8.068e-05 9.197e-05 0.00% Castro::Castro() 1 5.298e-05 7.307e-05 8.975e-05 0.00% FabArray::ParallelCopy() 41 6.829e-05 8.018e-05 8.947e-05 0.00% Castro::do_new_sources() 10 4.248e-05 7.035e-05 8.895e-05 0.00% Castro::do_old_sources() 10 3.913e-05 6.943e-05 8.857e-05 0.00% Amr::FinalizeInit() 1 3.776e-06 1.438e-05 8.345e-05 0.00% Amr::writeSmallPlotFile() 1 2.504e-05 4.873e-05 7.428e-05 0.00% FabArrayBase::getCPC() 41 5.039e-05 6.215e-05 7.263e-05 0.00% Castro::apply_source_to_state() 20 3.9e-05 5.312e-05 6.862e-05 0.00% Castro::construct_old_gravity() 10 3.3e-05 5.008e-05 6.393e-05 0.00% Castro::subcycle_advance_ctu() 10 4.196e-05 4.786e-05 5.408e-05 0.00% Castro::construct_new_gravity() 10 3.405e-05 4.372e-05 4.987e-05 0.00% Castro::advance() 10 3.154e-05 4.302e-05 4.801e-05 0.00% FabArrayBase::CPC::define() 2 2.246e-05 2.741e-05 3.835e-05 0.00% Castro::post_timestep() 10 1.696e-05 2.199e-05 3.733e-05 0.00% Castro::enforce_speed_limit() 62 2.73e-05 2.934e-05 3.231e-05 0.00% Castro::check_for_nan() 20 2.09e-05 2.449e-05 3.092e-05 0.00% Amr::defBaseLevel() 1 1.964e-05 2.47e-05 3.067e-05 0.00% Gravity::swapTimeLevels() 10 8.685e-06 1.418e-05 1.881e-05 0.00% Gravity::set_mass_offset() 10 9.109e-06 1.164e-05 1.81e-05 0.00% Amr::initSubcycle() 1 7.926e-06 9.683e-06 1.671e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.74e-06 1.12e-05 1.584e-05 0.00% Castro::computeNewDt() 9 8.292e-06 1.08e-05 1.377e-05 0.00% Castro::create_source_corrector() 10 7.057e-06 1.093e-05 1.344e-05 0.00% Castro::post_init() 1 2.825e-06 5.553e-06 1.251e-05 0.00% Castro::FluxRegCrseInit 10 6.903e-06 8.527e-06 1.01e-05 0.00% Amr::initialInit() 1 1.17e-06 2.087e-06 7.81e-06 0.00% Castro::retry_advance_ctu() 10 3.89e-06 5.563e-06 7.282e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.295e-06 4.768e-06 6.19e-06 0.00% Amr::InitializeInit() 1 1.973e-06 2.758e-06 4.802e-06 0.00% Castro::computeInitialDt() 2 2.78e-06 3.685e-06 4.758e-06 0.00% Castro::post_regrid() 1 1.838e-06 2.816e-06 3.763e-06 0.00% Amr::init() 1 1.718e-06 2.424e-06 3.538e-06 0.00% Castro::FluxRegFineAdd() 10 1.829e-06 2.236e-06 2.922e-06 0.00% DistributionMapping::Distribute() 1 8.49e-07 1.114e-06 2.143e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.663 3.665 3.666 100.00% Amr::coarseTimeStep() 10 3.456 3.456 3.456 94.28% Amr::timeStep() 10 3.441 3.443 3.444 93.96% Castro::advance() 10 3.426 3.427 3.428 93.51% Castro::subcycle_advance_ctu() 10 3.349 3.351 3.354 91.48% Castro::do_advance_ctu() 10 3.349 3.351 3.354 91.48% Castro::construct_ctu_hydro_source() 10 2.093 2.408 2.521 68.76% Gravity::make_radial_gravity() 21 0.3393 0.3518 0.3751 10.23% Gravity::get_new_grav_vector() 11 0.2268 0.2313 0.2329 6.35% Castro::construct_old_gravity() 10 0.1997 0.2106 0.2293 6.25% Gravity::get_old_grav_vector() 10 0.1987 0.2098 0.2287 6.24% FillPatchIterator::Initialize 41 0.1879 0.1945 0.2102 5.74% Castro::construct_new_gravity() 10 0.2023 0.2061 0.2079 5.67% Amr::init() 1 0.1915 0.1915 0.1916 5.23% Castro::initialize_do_advance() 10 0.1597 0.1771 0.1857 5.07% FillPatchSingleLevel 41 0.1355 0.1477 0.1813 4.95% Amr::initialInit() 1 0.1756 0.1758 0.176 4.80% Amr::InitializeInit() 1 0.06087 0.1011 0.1472 4.02% Amr::defBaseLevel() 1 0.06087 0.101 0.1472 4.02% FabArray::ParallelCopy() 41 0.09352 0.1059 0.1449 3.95% Castro::expand_state() 10 0.12 0.1296 0.1359 3.71% Castro::estTimeStep() 21 0.03111 0.07938 0.1305 3.56% Castro::initData() 1 0.04382 0.08367 0.1284 3.50% Castro::clean_state() 62 0.1088 0.1157 0.1187 3.24% FabArray::ParallelCopy_finish() 41 0.04357 0.06075 0.116 3.16% Amr::FinalizeInit() 1 0.02857 0.07474 0.1151 3.14% amrex::Copy() 193 0.05196 0.07872 0.08864 2.42% Castro::computeInitialDt() 2 0.00208 0.04836 0.08858 2.42% Castro::initialize_advance() 10 0.06997 0.07296 0.07489 2.04% FabArray::setVal() 143 0.06326 0.07051 0.07306 1.99% Castro::computeTemp() 63 0.06509 0.06934 0.07146 1.95% Castro::do_new_sources() 10 0.05389 0.06298 0.06458 1.76% Castro::reset_internal_energy(MultiFab) 63 0.04759 0.05028 0.0517 1.41% Castro::reset_internal_energy(Fab) 1008 0.04729 0.05 0.05142 1.40% FabArray::ParallelCopy_nowait() 41 0.02882 0.04511 0.05072 1.38% Castro::do_old_sources() 10 0.03409 0.04571 0.04926 1.34% StateDataPhysBCFunct::() 41 0.03518 0.04173 0.04654 1.27% StateData::FillBoundary(geom) 41 0.03507 0.04162 0.04642 1.27% Castro::normalize_species() 62 0.03844 0.04097 0.042 1.15% Castro::construct_new_source() 50 0.02489 0.0294 0.03036 0.83% Gravity::interpolate_monopole_grav() 21 0.02587 0.02722 0.02773 0.76% Amr::writePlotFile() 2 0.02614 0.0263 0.02647 0.72% Castro::post_init() 1 0.02569 0.02588 0.02603 0.71% Castro::construct_new_gravity_source() 10 0.02005 0.02288 0.02395 0.65% Castro::post_timestep() 10 0.01417 0.01576 0.0165 0.45% Castro::apply_source_to_state() 20 0.01059 0.01471 0.01624 0.44% FabArray::Saxpy() 20 0.01055 0.01465 0.01617 0.44% VisMF::Write(FabArray) 2 0.01241 0.01304 0.0158 0.43% FabArray::setDomainBndry() 41 0.004942 0.01042 0.01246 0.34% Castro::Castro() 1 0.0112 0.01147 0.0123 0.34% Castro::construct_old_source() 50 0.004977 0.01038 0.01193 0.33% Castro::check_for_nan() 20 0.009989 0.01106 0.01193 0.33% MultiFab::contains_nan() 20 0.009968 0.01104 0.0119 0.32% Castro::construct_old_gravity_source() 10 0.004935 0.0103 0.01184 0.32% Castro::computeNewDt() 9 0.008885 0.008916 0.008933 0.24% Castro::initMFs() 1 0.006789 0.007127 0.008802 0.24% Castro::enforce_min_density() 62 0.005559 0.006146 0.006593 0.18% AmrLevel::AmrLevel(dm) 1 0.00558 0.005761 0.00646 0.18% StateData::define() 4 0.005573 0.00575 0.006447 0.18% Castro::swap_state_time_levels() 10 0.003477 0.004587 0.004816 0.13% Castro::finalize_advance() 10 0.003435 0.003495 0.003613 0.10% Castro::finalize_do_advance() 10 0.0005915 0.001729 0.002125 0.06% Castro::buildMetrics() 1 0.001732 0.00179 0.002028 0.06% Castro::post_regrid() 1 0.001512 0.001584 0.001639 0.04% Amr::InitAmr() 1 0.0002693 0.0003098 0.0003896 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.6e-05 0.0001239 0.0001739 0.00% DistributionMapping::LeastUsedCPUs() 1 1.766e-05 0.000118 0.0001676 0.00% FabArrayBase::getCPC() 41 7.898e-05 8.956e-05 0.000104 0.00% Castro::enforce_consistent_e() 1 8.349e-05 9.067e-05 0.0001026 0.00% Amr::writeSmallPlotFile() 1 2.504e-05 4.873e-05 7.428e-05 0.00% FabArrayBase::CPC::define() 2 2.246e-05 2.741e-05 3.835e-05 0.00% Castro::enforce_speed_limit() 62 2.73e-05 2.934e-05 3.231e-05 0.00% Gravity::swapTimeLevels() 10 8.685e-06 1.418e-05 1.881e-05 0.00% Gravity::set_mass_offset() 10 9.109e-06 1.164e-05 1.81e-05 0.00% Amr::initSubcycle() 1 7.926e-06 9.683e-06 1.671e-05 0.00% Castro::create_source_corrector() 10 7.057e-06 1.093e-05 1.344e-05 0.00% Castro::FluxRegCrseInit 10 6.903e-06 8.527e-06 1.01e-05 0.00% Castro::retry_advance_ctu() 10 3.89e-06 5.563e-06 7.282e-06 0.00% Castro::FluxRegFineAdd() 10 1.829e-06 2.236e-06 2.922e-06 0.00% DistributionMapping::Distribute() 1 8.49e-07 1.114e-06 2.143e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-33-g4d6413c45fa0) finalized