MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-34-g88fe04f00600) initialized Starting run at 06:43:28 UTC on 2022-12-01. Successfully read inputs file ... Castro git describe: 22.11-19-g093c32c96 AMReX git describe: 22.11-34-g88fe04f00 Microphysics git describe: 22.11-48-ge6ec0450 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01680059 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365981447 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344764118 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34320422 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343516648 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353418997 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347179944 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.337916483 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.340560396 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33921591 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.339468743 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010533798 seconds Ending run at 06:43:32 UTC on 2022-12-01. Run time = 3.682677377 Run time without initialization = 3.473510352 Average number of zones advanced per microsecond: 0.755 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.68 ... 3.682 ... 3.683 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1812 2.4318 2.5138 68.26% Gravity::make_radial_gravity() 21 0.3222 0.3371 0.3715 10.09% Castro::do_advance_ctu() 10 0.01742 0.1033 0.3625 9.84% Castro::initData() 1 0.04017 0.08293 0.1361 3.70% Castro::estTimeStep() 21 0.03051 0.08758 0.1285 3.49% FabArray::ParallelCopy_finish() 41 0.04079 0.05784 0.1174 3.19% amrex::Copy() 193 0.05025 0.07861 0.08863 2.41% FabArray::setVal() 143 0.05697 0.06862 0.0728 1.98% Castro::reset_internal_energy(Fab) 1008 0.04827 0.05002 0.05133 1.39% FabArray::ParallelCopy_nowait() 41 0.02786 0.0447 0.05058 1.37% StateData::FillBoundary(geom) 41 0.03635 0.04158 0.04521 1.23% Castro::normalize_species() 62 0.03959 0.04145 0.04261 1.16% FillPatchIterator::Initialize 41 0.02388 0.03636 0.04076 1.11% Gravity::interpolate_monopole_grav() 21 0.02651 0.02757 0.02818 0.77% Castro::construct_new_gravity_source() 10 0.02021 0.02273 0.02332 0.63% Castro::computeTemp() 63 0.01805 0.01917 0.01969 0.53% Castro::initialize_do_advance() 10 0.009545 0.01744 0.01954 0.53% VisMF::Write(FabArray) 2 0.01285 0.01384 0.01706 0.46% FabArray::Saxpy() 20 0.008738 0.01435 0.01627 0.44% Castro::initialize_advance() 10 0.01053 0.01107 0.01258 0.34% Amr::writePlotFile() 2 0.007016 0.0106 0.01235 0.34% MultiFab::contains_nan() 20 0.009578 0.01099 0.01219 0.33% FabArray::setDomainBndry() 41 0.004887 0.01028 0.01219 0.33% Castro::construct_old_gravity_source() 10 0.004995 0.01014 0.01179 0.32% Castro::initMFs() 1 0.006766 0.007244 0.008719 0.24% StateData::define() 4 0.00558 0.00594 0.007352 0.20% Castro::construct_new_source() 50 0.004909 0.006498 0.007082 0.19% main() 1 0.004565 0.00641 0.007079 0.19% Castro::enforce_min_density() 62 0.005294 0.006057 0.006547 0.18% Castro::swap_state_time_levels() 10 0.003355 0.00454 0.00525 0.14% Gravity::get_new_grav_vector() 11 0.002672 0.00403 0.00462 0.13% Amr::coarseTimeStep() 10 0.0012 0.002011 0.003527 0.10% Gravity::get_old_grav_vector() 10 0.001438 0.002598 0.003132 0.09% Castro::buildMetrics() 1 0.001579 0.001653 0.001844 0.05% Castro::finalize_do_advance() 10 0.0006433 0.001442 0.001805 0.05% Castro::expand_state() 10 0.0006324 0.0008175 0.0009841 0.03% Amr::InitAmr() 1 0.0002725 0.0003684 0.0005374 0.01% Amr::timeStep() 10 0.0001867 0.0002633 0.000453 0.01% DistributionMapping::LeastUsedCPUs() 1 1.848e-05 0.0002714 0.0003818 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002779 0.0002916 0.0002999 0.01% Castro::clean_state() 62 0.0001462 0.0001682 0.0001808 0.00% StateDataPhysBCFunct::() 41 9.78e-05 0.0001163 0.0001288 0.00% Castro::finalize_advance() 10 8.108e-05 9.767e-05 0.0001098 0.00% Castro::enforce_consistent_e() 1 8.185e-05 9.133e-05 9.583e-05 0.00% Castro::construct_old_source() 50 4.429e-05 7.407e-05 9.25e-05 0.00% FillPatchSingleLevel 41 7.568e-05 8.068e-05 8.804e-05 0.00% FabArray::ParallelCopy() 41 6.984e-05 8.046e-05 8.799e-05 0.00% Amr::FinalizeInit() 1 3.872e-06 1.442e-05 8.348e-05 0.00% Castro::do_new_sources() 10 4.643e-05 6.921e-05 8.297e-05 0.00% Castro::do_old_sources() 10 4.201e-05 6.724e-05 8.285e-05 0.00% Castro::Castro() 1 5.682e-05 6.881e-05 8.244e-05 0.00% FabArrayBase::getCPC() 41 4.924e-05 6.081e-05 7.266e-05 0.00% Amr::writeSmallPlotFile() 1 3.194e-05 5.79e-05 7.099e-05 0.00% Castro::subcycle_advance_ctu() 10 3.976e-05 5.131e-05 6.919e-05 0.00% Castro::apply_source_to_state() 20 3.603e-05 5.206e-05 6.496e-05 0.00% Castro::construct_old_gravity() 10 3.818e-05 5.022e-05 6.431e-05 0.00% Castro::advance() 10 3.569e-05 4.562e-05 5.53e-05 0.00% Amr::initSubcycle() 1 8.286e-06 1.625e-05 5.449e-05 0.00% Castro::construct_new_gravity() 10 3.451e-05 4.474e-05 5.031e-05 0.00% Amr::defBaseLevel() 1 1.835e-05 2.653e-05 3.826e-05 0.00% Castro::enforce_speed_limit() 62 2.707e-05 2.965e-05 3.349e-05 0.00% FabArrayBase::CPC::define() 2 2.17e-05 2.477e-05 2.961e-05 0.00% Castro::post_timestep() 10 1.646e-05 2.219e-05 2.874e-05 0.00% Castro::check_for_nan() 20 2.053e-05 2.333e-05 2.747e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.854e-06 1.338e-05 2.534e-05 0.00% Gravity::swapTimeLevels() 10 8.424e-06 1.468e-05 2.471e-05 0.00% Amr::init() 1 1.695e-06 4.94e-06 2.419e-05 0.00% Castro::create_source_corrector() 10 7.729e-06 1.132e-05 1.33e-05 0.00% Gravity::set_mass_offset() 10 1.021e-05 1.129e-05 1.3e-05 0.00% Castro::computeNewDt() 9 8.15e-06 1.033e-05 1.275e-05 0.00% Castro::post_init() 1 3.119e-06 4.733e-06 1.079e-05 0.00% Castro::FluxRegCrseInit 10 5.945e-06 8.665e-06 1.053e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.745e-06 5.092e-06 8.762e-06 0.00% Castro::retry_advance_ctu() 10 3.72e-06 6.218e-06 8.506e-06 0.00% Amr::InitializeInit() 1 1.956e-06 3.556e-06 5.717e-06 0.00% Castro::computeInitialDt() 2 3.022e-06 3.909e-06 4.697e-06 0.00% Castro::post_regrid() 1 2.293e-06 3.032e-06 4.053e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 2.72e-06 3.72e-06 0.00% DistributionMapping::Distribute() 1 9.11e-07 1.269e-06 2.438e-06 0.00% Amr::initialInit() 1 1.07e-06 1.417e-06 2.006e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.68 3.682 3.683 100.00% Amr::coarseTimeStep() 10 3.456 3.456 3.456 93.84% Amr::timeStep() 10 3.442 3.444 3.445 93.54% Castro::advance() 10 3.427 3.428 3.428 93.09% Castro::subcycle_advance_ctu() 10 3.35 3.352 3.359 91.21% Castro::do_advance_ctu() 10 3.35 3.352 3.359 91.21% Castro::construct_ctu_hydro_source() 10 2.181 2.432 2.514 68.26% Gravity::make_radial_gravity() 21 0.342 0.3562 0.3826 10.39% Castro::construct_old_gravity() 10 0.2032 0.2149 0.2349 6.38% Gravity::get_old_grav_vector() 10 0.2023 0.2141 0.2343 6.36% Gravity::get_new_grav_vector() 11 0.229 0.2322 0.2341 6.36% FillPatchIterator::Initialize 41 0.1849 0.1911 0.2107 5.72% Amr::init() 1 0.2084 0.2087 0.2088 5.67% Castro::construct_new_gravity() 10 0.2015 0.2038 0.2057 5.58% Amr::initialInit() 1 0.1911 0.1916 0.1918 5.21% FillPatchSingleLevel 41 0.1327 0.1445 0.1819 4.94% Castro::initialize_do_advance() 10 0.1607 0.1735 0.1807 4.91% Amr::InitializeInit() 1 0.06129 0.1045 0.1593 4.33% Amr::defBaseLevel() 1 0.06129 0.1045 0.1593 4.33% FabArray::ParallelCopy() 41 0.09036 0.1027 0.1454 3.95% Castro::initData() 1 0.04427 0.08705 0.14 3.80% Castro::expand_state() 10 0.1198 0.1259 0.1312 3.56% Amr::FinalizeInit() 1 0.03228 0.08702 0.1301 3.53% Castro::estTimeStep() 21 0.03051 0.08758 0.1285 3.49% Castro::clean_state() 62 0.1108 0.1162 0.1187 3.22% FabArray::ParallelCopy_finish() 41 0.04079 0.05784 0.1174 3.19% Castro::computeInitialDt() 2 0.002373 0.05741 0.1008 2.74% amrex::Copy() 193 0.05025 0.07861 0.08863 2.41% Castro::initialize_advance() 10 0.06458 0.07181 0.07485 2.03% FabArray::setVal() 143 0.05697 0.06862 0.0728 1.98% Castro::computeTemp() 63 0.06661 0.06948 0.07132 1.94% Castro::do_new_sources() 10 0.05459 0.06285 0.06446 1.75% Castro::reset_internal_energy(MultiFab) 63 0.04857 0.05031 0.05163 1.40% Castro::reset_internal_energy(Fab) 1008 0.04827 0.05002 0.05133 1.39% FabArray::ParallelCopy_nowait() 41 0.02796 0.04479 0.05066 1.38% Castro::do_old_sources() 10 0.03309 0.04543 0.04911 1.33% StateDataPhysBCFunct::() 41 0.03645 0.0417 0.04534 1.23% StateData::FillBoundary(geom) 41 0.03635 0.04158 0.04521 1.23% Castro::normalize_species() 62 0.03959 0.04145 0.04261 1.16% Castro::construct_new_source() 50 0.02512 0.02923 0.0303 0.82% Castro::post_init() 1 0.02887 0.02912 0.02938 0.80% Gravity::interpolate_monopole_grav() 21 0.02651 0.02757 0.02818 0.77% Amr::writePlotFile() 2 0.0274 0.0277 0.028 0.76% Castro::construct_new_gravity_source() 10 0.02021 0.02273 0.02332 0.63% VisMF::Write(FabArray) 2 0.01285 0.01384 0.01706 0.46% Castro::post_timestep() 10 0.01524 0.01585 0.01641 0.45% Castro::apply_source_to_state() 20 0.008787 0.0144 0.01633 0.44% FabArray::Saxpy() 20 0.008738 0.01435 0.01627 0.44% Castro::check_for_nan() 20 0.009601 0.01102 0.01222 0.33% MultiFab::contains_nan() 20 0.009578 0.01099 0.01219 0.33% FabArray::setDomainBndry() 41 0.004887 0.01028 0.01219 0.33% Castro::Castro() 1 0.01097 0.01123 0.01194 0.32% Castro::construct_old_source() 50 0.00504 0.01021 0.01188 0.32% Castro::construct_old_gravity_source() 10 0.004995 0.01014 0.01179 0.32% Castro::computeNewDt() 9 0.008839 0.008856 0.008868 0.24% Castro::initMFs() 1 0.006766 0.007244 0.008719 0.24% AmrLevel::AmrLevel(dm) 1 0.005593 0.005953 0.007377 0.20% StateData::define() 4 0.00558 0.00594 0.007352 0.20% Castro::enforce_min_density() 62 0.005294 0.006057 0.006547 0.18% Castro::swap_state_time_levels() 10 0.003355 0.00454 0.00525 0.14% Castro::finalize_advance() 10 0.00311 0.003402 0.003538 0.10% Castro::buildMetrics() 1 0.001706 0.001781 0.001996 0.05% Castro::post_regrid() 1 0.00157 0.001692 0.001817 0.05% Castro::finalize_do_advance() 10 0.0006433 0.001442 0.001805 0.05% Amr::InitAmr() 1 0.0002808 0.0003847 0.0005919 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 2.968e-05 0.0002778 0.0003882 0.01% DistributionMapping::LeastUsedCPUs() 1 1.848e-05 0.0002714 0.0003818 0.01% FabArrayBase::getCPC() 41 7.452e-05 8.558e-05 9.865e-05 0.00% Castro::enforce_consistent_e() 1 8.185e-05 9.133e-05 9.583e-05 0.00% Amr::writeSmallPlotFile() 1 3.194e-05 5.79e-05 7.099e-05 0.00% Amr::initSubcycle() 1 8.286e-06 1.625e-05 5.449e-05 0.00% Castro::enforce_speed_limit() 62 2.707e-05 2.965e-05 3.349e-05 0.00% FabArrayBase::CPC::define() 2 2.17e-05 2.477e-05 2.961e-05 0.00% Gravity::swapTimeLevels() 10 8.424e-06 1.468e-05 2.471e-05 0.00% Castro::create_source_corrector() 10 7.729e-06 1.132e-05 1.33e-05 0.00% Gravity::set_mass_offset() 10 1.021e-05 1.129e-05 1.3e-05 0.00% Castro::FluxRegCrseInit 10 5.945e-06 8.665e-06 1.053e-05 0.00% Castro::retry_advance_ctu() 10 3.72e-06 6.218e-06 8.506e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 2.72e-06 3.72e-06 0.00% DistributionMapping::Distribute() 1 9.11e-07 1.269e-06 2.438e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-34-g88fe04f00600) finalized