MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.12-3-g57793fda870a) initialized Starting run at 06:46:53 UTC on 2022-12-09. Successfully read inputs file ... Castro git describe: 22.12-3-gdebbe0b78 AMReX git describe: 22.12-3-g57793fda8 Microphysics git describe: 22.12-12-ga8b220bd reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01580798 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.400772853 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.394320346 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327577108 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329633533 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356176707 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.325378207 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310636473 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310656878 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310692709 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311741396 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010490128 seconds Ending run at 06:46:57 UTC on 2022-12-09. Run time = 3.618965686 Run time without initialization = 3.394963673 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.618 ... 3.619 ... 3.619 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3301 2.3690 2.4350 67.28% Gravity::make_radial_gravity() 21 0.3251 0.3373 0.3469 9.59% Castro::do_advance_ctu() 10 0.04392 0.116 0.1541 4.26% Castro::initData() 1 0.03819 0.08006 0.134 3.70% Castro::estTimeStep() 21 0.0285 0.0906 0.1322 3.65% amrex::Copy() 193 0.06043 0.06952 0.07735 2.14% FabArray::ParallelCopy_finish() 41 0.03568 0.04659 0.07549 2.09% FabArray::setVal() 143 0.05862 0.06649 0.07416 2.05% Castro::reset_internal_energy(Fab) 1008 0.04859 0.05018 0.05198 1.44% FabArray::ParallelCopy_nowait() 41 0.03673 0.04092 0.04265 1.18% Castro::normalize_species() 62 0.04085 0.04196 0.04265 1.18% StateData::FillBoundary(geom) 41 0.0342 0.0363 0.04108 1.14% FillPatchIterator::Initialize 41 0.02959 0.03303 0.03494 0.97% Castro::construct_new_gravity_source() 10 0.02264 0.02698 0.03421 0.95% Gravity::interpolate_monopole_grav() 21 0.02759 0.02808 0.02853 0.79% Castro::computeTemp() 63 0.01974 0.02017 0.02085 0.58% Amr::InitAmr() 1 0.0002711 0.002797 0.02029 0.56% DistributionMapping::LeastUsedCPUs() 1 8.463e-06 0.01748 0.02001 0.55% Castro::initialize_do_advance() 10 0.0124 0.01678 0.01905 0.53% VisMF::Write(FabArray) 2 0.01342 0.01412 0.01719 0.47% FabArray::Saxpy() 20 0.01258 0.01356 0.01424 0.39% Castro::initialize_advance() 10 0.00453 0.01002 0.01332 0.37% MultiFab::contains_nan() 20 0.009969 0.01093 0.01174 0.32% Amr::writePlotFile() 2 0.006627 0.009935 0.01169 0.32% FabArray::setDomainBndry() 41 0.007891 0.01002 0.01123 0.31% Castro::construct_old_gravity_source() 10 0.007497 0.01019 0.0109 0.30% Castro::initMFs() 1 0.006633 0.007031 0.008547 0.24% Castro::construct_new_source() 50 0.005812 0.006168 0.006557 0.18% Castro::enforce_min_density() 62 0.005712 0.005993 0.006416 0.18% StateData::define() 4 0.005571 0.005794 0.006393 0.18% main() 1 0.004944 0.005929 0.006249 0.17% Castro::swap_state_time_levels() 10 0.003281 0.00437 0.005238 0.14% Gravity::get_new_grav_vector() 11 0.003018 0.003585 0.003954 0.11% Amr::coarseTimeStep() 10 0.00196 0.002556 0.003168 0.09% Gravity::get_old_grav_vector() 10 0.001834 0.002254 0.00268 0.07% Castro::finalize_do_advance() 10 0.0007669 0.001575 0.001923 0.05% Castro::buildMetrics() 1 0.001564 0.001623 0.001853 0.05% Castro::expand_state() 10 0.0005998 0.0008407 0.00114 0.03% Amr::timeStep() 10 0.000159 0.000236 0.000461 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002853 0.0002968 0.0003123 0.01% Castro::clean_state() 62 0.0001338 0.0001489 0.0001755 0.00% StateDataPhysBCFunct::() 41 8.905e-05 0.0001003 0.0001168 0.00% Castro::finalize_advance() 10 7.62e-05 9.131e-05 0.0001048 0.00% Castro::enforce_consistent_e() 1 7.54e-05 8.68e-05 9.533e-05 0.00% FabArray::ParallelCopy() 41 6.634e-05 7.824e-05 9.495e-05 0.00% Castro::Castro() 1 5.844e-05 7.412e-05 9.152e-05 0.00% Amr::writeSmallPlotFile() 1 2.548e-05 5.39e-05 8.983e-05 0.00% Castro::construct_old_source() 50 4.588e-05 6.791e-05 8.387e-05 0.00% FabArrayBase::getCPC() 41 3.91e-05 5.023e-05 6.933e-05 0.00% Castro::do_new_sources() 10 4.981e-05 5.76e-05 6.78e-05 0.00% FillPatchSingleLevel 41 5.573e-05 6.189e-05 6.764e-05 0.00% Castro::do_old_sources() 10 4.234e-05 5.687e-05 6.598e-05 0.00% Amr::FinalizeInit() 1 3.679e-06 1.332e-05 6.593e-05 0.00% Castro::subcycle_advance_ctu() 10 3.556e-05 4.654e-05 6.573e-05 0.00% Castro::apply_source_to_state() 20 3.308e-05 4.254e-05 5.35e-05 0.00% Castro::advance() 10 3.425e-05 4.001e-05 5.081e-05 0.00% Castro::construct_new_gravity() 10 3.306e-05 3.784e-05 4.541e-05 0.00% Castro::construct_old_gravity() 10 2.886e-05 3.713e-05 4.3e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.835e-05 2.499e-05 3.138e-05 0.00% Castro::enforce_speed_limit() 62 2.494e-05 2.727e-05 2.993e-05 0.00% FabArrayBase::CPC::define() 2 2.026e-05 2.294e-05 2.655e-05 0.00% Castro::check_for_nan() 20 2.138e-05 2.344e-05 2.489e-05 0.00% Amr::defBaseLevel() 1 1.209e-05 1.595e-05 2.453e-05 0.00% Castro::post_timestep() 10 1.326e-05 1.619e-05 1.919e-05 0.00% Gravity::swapTimeLevels() 10 5.829e-06 1.007e-05 1.291e-05 0.00% Castro::create_source_corrector() 10 7.963e-06 9.706e-06 1.242e-05 0.00% Castro::computeNewDt() 9 7.205e-06 8.645e-06 1.165e-05 0.00% Castro::FluxRegCrseInit 10 6.515e-06 8.851e-06 1.091e-05 0.00% Amr::initSubcycle() 1 8.463e-06 9.252e-06 1.054e-05 0.00% Gravity::set_mass_offset() 10 8.648e-06 9.512e-06 1.026e-05 0.00% Castro::post_init() 1 3.04e-06 4.544e-06 9.22e-06 0.00% Castro::post_regrid() 1 2.119e-06 3.388e-06 6.914e-06 0.00% Castro::retry_advance_ctu() 10 4.566e-06 5.616e-06 6.367e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.493e-06 4.96e-06 5.954e-06 0.00% Amr::InitializeInit() 1 1.987e-06 2.661e-06 5.251e-06 0.00% Castro::computeInitialDt() 2 3.683e-06 4.499e-06 5.06e-06 0.00% Castro::FluxRegFineAdd() 10 1.977e-06 2.501e-06 3.644e-06 0.00% Amr::init() 1 1.935e-06 2.22e-06 2.405e-06 0.00% Amr::initialInit() 1 1.093e-06 1.325e-06 1.476e-06 0.00% DistributionMapping::Distribute() 1 8.24e-07 9.921e-07 1.044e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.618 3.619 3.619 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 93.35% Amr::timeStep() 10 3.365 3.365 3.366 93.01% Castro::advance() 10 3.348 3.349 3.35 92.55% Castro::subcycle_advance_ctu() 10 3.269 3.276 3.285 90.78% Castro::do_advance_ctu() 10 3.269 3.276 3.285 90.78% Castro::construct_ctu_hydro_source() 10 2.33 2.369 2.435 67.28% Gravity::make_radial_gravity() 21 0.3406 0.3535 0.3622 10.01% Amr::init() 1 0.2036 0.2211 0.2236 6.18% Castro::construct_old_gravity() 10 0.206 0.2151 0.2232 6.17% Gravity::get_old_grav_vector() 10 0.2053 0.2144 0.2226 6.15% Gravity::get_new_grav_vector() 11 0.2176 0.2188 0.2202 6.09% Amr::initialInit() 1 0.1876 0.205 0.2079 5.75% Castro::construct_new_gravity() 10 0.191 0.1918 0.1926 5.32% FillPatchIterator::Initialize 41 0.1561 0.1672 0.1842 5.09% Amr::InitializeInit() 1 0.06384 0.1187 0.1766 4.88% Amr::defBaseLevel() 1 0.06383 0.1187 0.1766 4.88% Castro::initialize_do_advance() 10 0.153 0.1622 0.1694 4.68% FillPatchSingleLevel 41 0.1152 0.1241 0.1467 4.05% Castro::initData() 1 0.0422 0.08411 0.138 3.81% Castro::estTimeStep() 21 0.0285 0.0906 0.1322 3.65% Amr::FinalizeInit() 1 0.03135 0.08635 0.1285 3.55% Castro::expand_state() 10 0.1059 0.1149 0.1238 3.42% Castro::clean_state() 62 0.1147 0.1178 0.1207 3.34% FabArray::ParallelCopy() 41 0.07847 0.08766 0.1124 3.10% Castro::computeInitialDt() 2 0.00238 0.05784 0.1002 2.77% Castro::do_new_sources() 10 0.05927 0.06589 0.07802 2.16% amrex::Copy() 193 0.06043 0.06952 0.07735 2.14% Castro::initialize_advance() 10 0.05937 0.06977 0.0771 2.13% FabArray::ParallelCopy_finish() 41 0.03568 0.04659 0.07549 2.09% FabArray::setVal() 143 0.05862 0.06649 0.07416 2.05% Castro::computeTemp() 63 0.06875 0.07064 0.07299 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04887 0.05047 0.05227 1.44% Castro::reset_internal_energy(Fab) 1008 0.04859 0.05018 0.05198 1.44% Castro::do_old_sources() 10 0.03973 0.0449 0.04598 1.27% FabArray::ParallelCopy_nowait() 41 0.03679 0.04099 0.04272 1.18% Castro::normalize_species() 62 0.04085 0.04196 0.04265 1.18% StateDataPhysBCFunct::() 41 0.0343 0.0364 0.04118 1.14% StateData::FillBoundary(geom) 41 0.0342 0.0363 0.04108 1.14% Castro::construct_new_source() 50 0.02866 0.03315 0.04077 1.13% Castro::construct_new_gravity_source() 10 0.02264 0.02698 0.03421 0.95% Gravity::interpolate_monopole_grav() 21 0.02759 0.02808 0.02853 0.79% Castro::post_init() 1 0.02739 0.02803 0.02836 0.78% Amr::writePlotFile() 2 0.02615 0.0266 0.02694 0.74% Amr::InitAmr() 1 0.0002797 0.002806 0.02029 0.56% DistributionMapping::SFCProcessorMapDoIt() 1 1.295e-05 0.01749 0.02002 0.55% DistributionMapping::LeastUsedCPUs() 1 8.463e-06 0.01748 0.02001 0.55% VisMF::Write(FabArray) 2 0.01342 0.01412 0.01719 0.47% Castro::post_timestep() 10 0.01564 0.0162 0.01663 0.46% Castro::apply_source_to_state() 20 0.01262 0.0136 0.0143 0.40% FabArray::Saxpy() 20 0.01258 0.01356 0.01424 0.39% Castro::Castro() 1 0.01083 0.01121 0.01213 0.34% Castro::check_for_nan() 20 0.009992 0.01096 0.01176 0.33% MultiFab::contains_nan() 20 0.009969 0.01093 0.01174 0.32% FabArray::setDomainBndry() 41 0.007891 0.01002 0.01123 0.31% Castro::construct_old_source() 50 0.007543 0.01026 0.01098 0.30% Castro::construct_old_gravity_source() 10 0.007497 0.01019 0.0109 0.30% Castro::computeNewDt() 9 0.00918 0.009199 0.009218 0.25% Castro::initMFs() 1 0.006633 0.007031 0.008547 0.24% AmrLevel::AmrLevel(dm) 1 0.005595 0.005819 0.006424 0.18% Castro::enforce_min_density() 62 0.005712 0.005993 0.006416 0.18% StateData::define() 4 0.005571 0.005794 0.006393 0.18% Castro::swap_state_time_levels() 10 0.003281 0.00437 0.005238 0.14% Castro::finalize_advance() 10 0.002926 0.003404 0.003999 0.11% Castro::buildMetrics() 1 0.001684 0.001751 0.002005 0.06% Castro::post_regrid() 1 0.001571 0.001693 0.001993 0.06% Castro::finalize_do_advance() 10 0.0007669 0.001575 0.001923 0.05% Castro::enforce_consistent_e() 1 7.54e-05 8.68e-05 9.533e-05 0.00% Amr::writeSmallPlotFile() 1 2.548e-05 5.39e-05 8.983e-05 0.00% FabArrayBase::getCPC() 41 6.374e-05 7.317e-05 8.959e-05 0.00% Castro::enforce_speed_limit() 62 2.494e-05 2.727e-05 2.993e-05 0.00% FabArrayBase::CPC::define() 2 2.026e-05 2.294e-05 2.655e-05 0.00% Gravity::swapTimeLevels() 10 5.829e-06 1.007e-05 1.291e-05 0.00% Castro::create_source_corrector() 10 7.963e-06 9.706e-06 1.242e-05 0.00% Castro::FluxRegCrseInit 10 6.515e-06 8.851e-06 1.091e-05 0.00% Amr::initSubcycle() 1 8.463e-06 9.252e-06 1.054e-05 0.00% Gravity::set_mass_offset() 10 8.648e-06 9.512e-06 1.026e-05 0.00% Castro::retry_advance_ctu() 10 4.566e-06 5.616e-06 6.367e-06 0.00% Castro::FluxRegFineAdd() 10 1.977e-06 2.501e-06 3.644e-06 0.00% DistributionMapping::Distribute() 1 8.24e-07 9.921e-07 1.044e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.12-3-g57793fda870a) finalized