MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.12-15-gff1cce552060) initialized Starting run at 06:46:45 UTC on 2022-12-15. Successfully read inputs file ... Castro git describe: 22.12-5-g3ad2ef0c0 AMReX git describe: 22.12-15-gff1cce552 Microphysics git describe: 22.12-17-g6848bad4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015468406 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362619343 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.392462028 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335616513 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331181174 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358115524 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328572375 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311381706 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311791094 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313202143 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312481298 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010200432 seconds Ending run at 06:46:48 UTC on 2022-12-15. Run time = 3.582119333 Run time without initialization = 3.374913398 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.581 ... 3.582 ... 3.582 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3220 2.3628 2.3937 66.82% Gravity::make_radial_gravity() 21 0.3193 0.3324 0.3428 9.57% Castro::estTimeStep() 21 0.03223 0.09262 0.1477 4.12% Castro::initData() 1 0.03887 0.08392 0.136 3.80% Castro::do_advance_ctu() 10 0.05158 0.08376 0.1279 3.57% amrex::Copy() 193 0.06552 0.07327 0.08286 2.31% FabArray::setVal() 143 0.06353 0.0698 0.07963 2.22% FabArray::ParallelCopy_finish() 41 0.0366 0.048 0.06392 1.78% Castro::reset_internal_energy(Fab) 1008 0.04812 0.05044 0.05273 1.47% FabArray::ParallelCopy_nowait() 41 0.03707 0.04194 0.0432 1.21% Castro::normalize_species() 62 0.041 0.04179 0.04298 1.20% StateData::FillBoundary(geom) 41 0.03295 0.03698 0.04143 1.16% FillPatchIterator::Initialize 41 0.02871 0.03486 0.03736 1.04% Castro::construct_new_gravity_source() 10 0.02337 0.02705 0.03256 0.91% Gravity::interpolate_monopole_grav() 21 0.02825 0.02859 0.02921 0.82% Castro::computeTemp() 63 0.01906 0.01995 0.02105 0.59% Castro::initialize_do_advance() 10 0.01227 0.01738 0.01911 0.53% VisMF::Write(FabArray) 2 0.01271 0.01349 0.01607 0.45% FabArray::Saxpy() 20 0.01344 0.01428 0.01491 0.42% Castro::initialize_advance() 10 0.009698 0.01206 0.01462 0.41% FabArray::setDomainBndry() 41 0.007537 0.01089 0.01239 0.35% MultiFab::contains_nan() 20 0.01032 0.01123 0.01217 0.34% Castro::construct_old_gravity_source() 10 0.007679 0.01039 0.01105 0.31% Amr::writePlotFile() 2 0.006827 0.009451 0.01025 0.29% Castro::initMFs() 1 0.006854 0.008086 0.009892 0.28% StateData::define() 4 0.005694 0.006712 0.008205 0.23% main() 1 0.004947 0.005818 0.006529 0.18% Castro::construct_new_source() 50 0.006031 0.006174 0.006367 0.18% Castro::enforce_min_density() 62 0.005843 0.006091 0.006269 0.18% Amr::coarseTimeStep() 10 0.002658 0.003789 0.005011 0.14% Castro::swap_state_time_levels() 10 0.003461 0.004628 0.004864 0.14% Gravity::get_new_grav_vector() 11 0.003055 0.003631 0.00392 0.11% Gravity::get_old_grav_vector() 10 0.001975 0.002441 0.002743 0.08% Castro::buildMetrics() 1 0.001624 0.001927 0.002365 0.07% Castro::finalize_do_advance() 10 0.0005357 0.001397 0.001729 0.05% Castro::expand_state() 10 0.0007229 0.0009432 0.001066 0.03% Amr::InitAmr() 1 0.0002832 0.0003653 0.0005028 0.01% Amr::timeStep() 10 0.0001524 0.0002334 0.0004194 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002819 0.0003014 0.0003577 0.01% DistributionMapping::LeastUsedCPUs() 1 7.698e-06 0.0001888 0.0002861 0.01% Castro::clean_state() 62 0.0001497 0.0001596 0.0001804 0.01% Castro::finalize_advance() 10 8.437e-05 9.609e-05 0.0001152 0.00% StateDataPhysBCFunct::() 41 8.625e-05 0.0001027 0.0001126 0.00% Castro::enforce_consistent_e() 1 7.915e-05 8.791e-05 9.728e-05 0.00% Castro::Castro() 1 6.074e-05 7.168e-05 9.445e-05 0.00% Castro::construct_old_source() 50 5.46e-05 7.073e-05 8.717e-05 0.00% FabArray::ParallelCopy() 41 6.466e-05 7.317e-05 8.194e-05 0.00% Amr::writeSmallPlotFile() 1 2.476e-05 5.894e-05 8.016e-05 0.00% Amr::FinalizeInit() 1 3.787e-06 1.408e-05 7.915e-05 0.00% FabArrayBase::getCPC() 41 4.628e-05 6.275e-05 7.305e-05 0.00% FillPatchSingleLevel 41 6.015e-05 6.384e-05 6.72e-05 0.00% Castro::do_new_sources() 10 5.581e-05 5.907e-05 6.564e-05 0.00% Castro::do_old_sources() 10 5.094e-05 5.995e-05 6.46e-05 0.00% Castro::apply_source_to_state() 20 3.547e-05 4.376e-05 5.981e-05 0.00% Castro::subcycle_advance_ctu() 10 3.72e-05 4.604e-05 5.473e-05 0.00% Castro::construct_new_gravity() 10 3.334e-05 3.844e-05 5.16e-05 0.00% Castro::advance() 10 3.658e-05 4.094e-05 4.386e-05 0.00% Castro::construct_old_gravity() 10 3.552e-05 3.912e-05 4.359e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.83e-05 2.793e-05 4.085e-05 0.00% FabArrayBase::CPC::define() 2 2.136e-05 2.814e-05 3.908e-05 0.00% Castro::enforce_speed_limit() 62 2.521e-05 2.831e-05 3.111e-05 0.00% Castro::check_for_nan() 20 2.156e-05 2.4e-05 2.688e-05 0.00% Amr::defBaseLevel() 1 1.202e-05 1.648e-05 2.117e-05 0.00% Castro::post_timestep() 10 1.327e-05 1.671e-05 1.969e-05 0.00% Amr::initSubcycle() 1 9.449e-06 1.135e-05 1.615e-05 0.00% Gravity::swapTimeLevels() 10 1.033e-05 1.195e-05 1.501e-05 0.00% Castro::create_source_corrector() 10 8.602e-06 1.028e-05 1.223e-05 0.00% Gravity::set_mass_offset() 10 8.139e-06 1.08e-05 1.194e-05 0.00% Castro::FluxRegCrseInit 10 7.112e-06 8.736e-06 1.112e-05 0.00% Castro::post_init() 1 2.95e-06 5.083e-06 9.713e-06 0.00% Castro::computeNewDt() 9 7.629e-06 8.552e-06 9.295e-06 0.00% Castro::retry_advance_ctu() 10 4.723e-06 5.506e-06 6.698e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.927e-06 4.724e-06 6.208e-06 0.00% Amr::InitializeInit() 1 2.023e-06 2.598e-06 5.285e-06 0.00% Castro::computeInitialDt() 2 3.721e-06 4.417e-06 5.069e-06 0.00% Castro::post_regrid() 1 1.954e-06 3.22e-06 4.539e-06 0.00% Amr::init() 1 1.98e-06 2.433e-06 3.212e-06 0.00% Castro::FluxRegFineAdd() 10 2.16e-06 2.495e-06 2.976e-06 0.00% Amr::initialInit() 1 1.161e-06 1.498e-06 2.046e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.103e-06 1.334e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.581 3.581 3.582 100.00% Amr::coarseTimeStep() 10 3.358 3.358 3.358 93.75% Amr::timeStep() 10 3.343 3.344 3.345 93.37% Castro::advance() 10 3.326 3.327 3.328 92.89% Castro::subcycle_advance_ctu() 10 3.241 3.248 3.253 90.82% Castro::do_advance_ctu() 10 3.241 3.248 3.253 90.81% Castro::construct_ctu_hydro_source() 10 2.322 2.363 2.394 66.82% Gravity::make_radial_gravity() 21 0.3361 0.3496 0.361 10.08% Gravity::get_new_grav_vector() 11 0.2307 0.2324 0.234 6.53% Castro::construct_old_gravity() 10 0.1927 0.202 0.2114 5.90% Gravity::get_old_grav_vector() 10 0.1919 0.2013 0.2107 5.88% Castro::construct_new_gravity() 10 0.2057 0.2073 0.2086 5.82% Amr::init() 1 0.2065 0.2067 0.2068 5.77% Amr::initialInit() 1 0.1907 0.191 0.1913 5.34% FillPatchIterator::Initialize 41 0.1634 0.173 0.1859 5.19% Castro::initialize_do_advance() 10 0.1466 0.1639 0.1759 4.91% Amr::InitializeInit() 1 0.05849 0.1065 0.1621 4.53% Amr::defBaseLevel() 1 0.05849 0.1065 0.1621 4.53% Castro::estTimeStep() 21 0.03223 0.09262 0.1477 4.12% Castro::initData() 1 0.04248 0.08769 0.1398 3.90% FillPatchSingleLevel 41 0.1189 0.1273 0.137 3.82% Amr::FinalizeInit() 1 0.02876 0.08448 0.1324 3.70% Castro::expand_state() 10 0.1059 0.1166 0.1275 3.56% Castro::clean_state() 62 0.1143 0.1178 0.1221 3.41% Castro::computeInitialDt() 2 0.00244 0.05826 0.1063 2.97% FabArray::ParallelCopy() 41 0.07995 0.09011 0.1012 2.82% amrex::Copy() 193 0.06552 0.07327 0.08286 2.31% Castro::initialize_advance() 10 0.07038 0.07536 0.08223 2.30% FabArray::setVal() 143 0.06353 0.0698 0.07963 2.22% Castro::do_new_sources() 10 0.05992 0.06672 0.07713 2.15% Castro::computeTemp() 63 0.06796 0.07069 0.07413 2.07% FabArray::ParallelCopy_finish() 41 0.0366 0.048 0.06392 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04841 0.05074 0.05308 1.48% Castro::reset_internal_energy(Fab) 1008 0.04812 0.05044 0.05273 1.47% Castro::do_old_sources() 10 0.04248 0.04565 0.04663 1.30% FabArray::ParallelCopy_nowait() 41 0.03716 0.04204 0.04328 1.21% Castro::normalize_species() 62 0.041 0.04179 0.04298 1.20% StateDataPhysBCFunct::() 41 0.03305 0.03709 0.04152 1.16% StateData::FillBoundary(geom) 41 0.03295 0.03698 0.04143 1.16% Castro::construct_new_source() 50 0.02949 0.03322 0.03893 1.09% Castro::construct_new_gravity_source() 10 0.02337 0.02705 0.03256 0.91% Gravity::interpolate_monopole_grav() 21 0.02825 0.02859 0.02921 0.82% Castro::post_init() 1 0.0259 0.02607 0.02632 0.73% Amr::writePlotFile() 2 0.0258 0.02599 0.02619 0.73% Castro::post_timestep() 10 0.01564 0.01655 0.01821 0.51% VisMF::Write(FabArray) 2 0.01271 0.01349 0.01607 0.45% Castro::apply_source_to_state() 20 0.01347 0.01433 0.01496 0.42% FabArray::Saxpy() 20 0.01344 0.01428 0.01491 0.42% Castro::Castro() 1 0.009975 0.01185 0.0141 0.39% FabArray::setDomainBndry() 41 0.007537 0.01089 0.01239 0.35% Castro::check_for_nan() 20 0.01034 0.01126 0.0122 0.34% MultiFab::contains_nan() 20 0.01032 0.01123 0.01217 0.34% Castro::construct_old_source() 50 0.007739 0.01046 0.01114 0.31% Castro::construct_old_gravity_source() 10 0.007679 0.01039 0.01105 0.31% Castro::initMFs() 1 0.006854 0.008086 0.009892 0.28% Castro::computeNewDt() 9 0.009281 0.009289 0.009294 0.26% AmrLevel::AmrLevel(dm) 1 0.005726 0.00674 0.00824 0.23% StateData::define() 4 0.005694 0.006712 0.008205 0.23% Castro::enforce_min_density() 62 0.005843 0.006091 0.006269 0.18% Castro::swap_state_time_levels() 10 0.003461 0.004628 0.004864 0.14% Castro::finalize_advance() 10 0.002912 0.003434 0.003993 0.11% Castro::buildMetrics() 1 0.001738 0.00208 0.002587 0.07% Castro::finalize_do_advance() 10 0.0005357 0.001397 0.001729 0.05% Castro::post_regrid() 1 0.001566 0.001614 0.001669 0.05% Amr::InitAmr() 1 0.0002926 0.0003767 0.0005178 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.31e-05 0.0001946 0.0002934 0.01% DistributionMapping::LeastUsedCPUs() 1 7.698e-06 0.0001888 0.0002861 0.01% FabArrayBase::getCPC() 41 7.754e-05 9.089e-05 0.0001025 0.00% Castro::enforce_consistent_e() 1 7.915e-05 8.791e-05 9.728e-05 0.00% Amr::writeSmallPlotFile() 1 2.476e-05 5.894e-05 8.016e-05 0.00% FabArrayBase::CPC::define() 2 2.136e-05 2.814e-05 3.908e-05 0.00% Castro::enforce_speed_limit() 62 2.521e-05 2.831e-05 3.111e-05 0.00% Amr::initSubcycle() 1 9.449e-06 1.135e-05 1.615e-05 0.00% Gravity::swapTimeLevels() 10 1.033e-05 1.195e-05 1.501e-05 0.00% Castro::create_source_corrector() 10 8.602e-06 1.028e-05 1.223e-05 0.00% Gravity::set_mass_offset() 10 8.139e-06 1.08e-05 1.194e-05 0.00% Castro::FluxRegCrseInit 10 7.112e-06 8.736e-06 1.112e-05 0.00% Castro::retry_advance_ctu() 10 4.723e-06 5.506e-06 6.698e-06 0.00% Castro::FluxRegFineAdd() 10 2.16e-06 2.495e-06 2.976e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.103e-06 1.334e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.12-15-gff1cce552060) finalized