MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.12-16-g96d8c53fbf09) initialized Starting run at 06:46:23 UTC on 2022-12-19. Successfully read inputs file ... Castro git describe: 22.12-5-g3ad2ef0c0 AMReX git describe: 22.12-16-g96d8c53fb Microphysics git describe: 22.12-23-gacd17b4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015069205 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367004609 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351726605 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330053265 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330273187 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359421423 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.331087647 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310749966 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313215553 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312403737 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314864616 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010210502 seconds Ending run at 06:46:26 UTC on 2022-12-19. Run time = 3.548838954 Run time without initialization = 3.338200296 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.548 ... 3.548 ... 3.549 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3104 2.3554 2.3866 67.25% Gravity::make_radial_gravity() 21 0.3172 0.3289 0.3401 9.58% Castro::initData() 1 0.04008 0.08405 0.1402 3.95% Castro::do_advance_ctu() 10 0.04794 0.08233 0.1307 3.68% Castro::estTimeStep() 21 0.03285 0.0919 0.1305 3.68% FabArray::ParallelCopy_finish() 41 0.03255 0.0451 0.08138 2.29% FabArray::setVal() 143 0.05826 0.06724 0.07821 2.20% amrex::Copy() 193 0.06011 0.0705 0.07775 2.19% Castro::reset_internal_energy(Fab) 1008 0.04785 0.04986 0.05222 1.47% Castro::normalize_species() 62 0.04147 0.04193 0.04238 1.19% FabArray::ParallelCopy_nowait() 41 0.03726 0.04078 0.04233 1.19% StateData::FillBoundary(geom) 41 0.03335 0.03645 0.03935 1.11% FillPatchIterator::Initialize 41 0.0284 0.03271 0.03514 0.99% Castro::construct_new_gravity_source() 10 0.02358 0.02627 0.0302 0.85% Gravity::interpolate_monopole_grav() 21 0.02827 0.02851 0.0288 0.81% Castro::computeTemp() 63 0.0177 0.01981 0.02073 0.58% Castro::initialize_do_advance() 10 0.01185 0.01707 0.01965 0.55% VisMF::Write(FabArray) 2 0.0129 0.01364 0.0161 0.45% FabArray::Saxpy() 20 0.01181 0.01366 0.01463 0.41% Castro::initialize_advance() 10 0.004108 0.01007 0.01342 0.38% MultiFab::contains_nan() 20 0.01033 0.0111 0.01222 0.34% FabArray::setDomainBndry() 41 0.007808 0.01003 0.01136 0.32% Castro::construct_old_gravity_source() 10 0.007531 0.01027 0.011 0.31% Amr::writePlotFile() 2 0.006631 0.009335 0.01085 0.31% Castro::initMFs() 1 0.006695 0.007778 0.0103 0.29% StateData::define() 4 0.005698 0.006477 0.008282 0.23% Castro::construct_new_source() 50 0.005935 0.006207 0.006453 0.18% main() 1 0.00508 0.005732 0.006426 0.18% Castro::enforce_min_density() 62 0.005596 0.00599 0.006387 0.18% Gravity::get_new_grav_vector() 11 0.002927 0.003632 0.005445 0.15% Castro::swap_state_time_levels() 10 0.003316 0.004342 0.004693 0.13% Amr::coarseTimeStep() 10 0.001149 0.002254 0.003216 0.09% Gravity::get_old_grav_vector() 10 0.001736 0.002305 0.002719 0.08% Castro::buildMetrics() 1 0.001584 0.001857 0.002352 0.07% Castro::finalize_do_advance() 10 0.0006487 0.001455 0.001827 0.05% Castro::expand_state() 10 0.0006396 0.0007585 0.0008681 0.02% Amr::InitAmr() 1 0.0002624 0.0003594 0.0005236 0.01% Amr::timeStep() 10 0.00018 0.0002403 0.0004305 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000279 0.0002955 0.000315 0.01% DistributionMapping::LeastUsedCPUs() 1 6.707e-06 0.0001876 0.0002886 0.01% Castro::clean_state() 62 0.0001345 0.0001477 0.0001828 0.01% Castro::enforce_consistent_e() 1 7.922e-05 9.902e-05 0.0001274 0.00% Castro::finalize_advance() 10 8.428e-05 9.355e-05 0.0001128 0.00% StateDataPhysBCFunct::() 41 8.572e-05 0.0001005 0.0001112 0.00% FabArray::ParallelCopy() 41 6.02e-05 7.122e-05 8.367e-05 0.00% FabArrayBase::getCPC() 41 4.266e-05 5.936e-05 8.164e-05 0.00% Castro::Castro() 1 5.843e-05 6.769e-05 7.899e-05 0.00% FillPatchSingleLevel 41 5.814e-05 6.548e-05 7.725e-05 0.00% Castro::construct_old_source() 50 5.139e-05 6.53e-05 7.677e-05 0.00% Castro::advance() 10 3.433e-05 4.476e-05 7.603e-05 0.00% Amr::writeSmallPlotFile() 1 2.618e-05 6.031e-05 7.374e-05 0.00% Castro::do_old_sources() 10 5.057e-05 5.9e-05 7.186e-05 0.00% Amr::FinalizeInit() 1 4.06e-06 1.32e-05 7.155e-05 0.00% Castro::do_new_sources() 10 4.906e-05 6.15e-05 6.743e-05 0.00% Castro::apply_source_to_state() 20 3.639e-05 4.352e-05 5.493e-05 0.00% Castro::subcycle_advance_ctu() 10 3.764e-05 4.532e-05 5.067e-05 0.00% Castro::construct_new_gravity() 10 3.405e-05 3.933e-05 4.692e-05 0.00% Castro::construct_old_gravity() 10 3.362e-05 3.817e-05 4.582e-05 0.00% Castro::post_timestep() 10 1.434e-05 1.879e-05 3.564e-05 0.00% FabArrayBase::CPC::define() 2 2.198e-05 2.471e-05 3.228e-05 0.00% Castro::enforce_speed_limit() 62 2.507e-05 2.763e-05 3.17e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.998e-05 2.594e-05 3.119e-05 0.00% Castro::check_for_nan() 20 2.277e-05 2.388e-05 2.618e-05 0.00% Amr::defBaseLevel() 1 1.23e-05 1.605e-05 2.28e-05 0.00% Amr::initSubcycle() 1 8.524e-06 1.069e-05 1.653e-05 0.00% Castro::create_source_corrector() 10 7.691e-06 9.606e-06 1.58e-05 0.00% Gravity::set_mass_offset() 10 8.855e-06 1.014e-05 1.271e-05 0.00% Gravity::swapTimeLevels() 10 7.86e-06 1.046e-05 1.198e-05 0.00% Castro::FluxRegCrseInit 10 6.156e-06 8.017e-06 9.978e-06 0.00% Castro::computeNewDt() 9 7.09e-06 8.2e-06 9.461e-06 0.00% Castro::post_init() 1 3e-06 4.217e-06 8.509e-06 0.00% Castro::retry_advance_ctu() 10 4.325e-06 5.281e-06 6.638e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.574e-06 4.724e-06 6.011e-06 0.00% Amr::InitializeInit() 1 1.935e-06 3.12e-06 5.718e-06 0.00% Castro::computeInitialDt() 2 3.451e-06 4.315e-06 5.68e-06 0.00% Castro::post_regrid() 1 2.111e-06 3.135e-06 4.373e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.214e-06 2.739e-06 0.00% Amr::init() 1 1.817e-06 2.092e-06 2.487e-06 0.00% Amr::initialInit() 1 1.009e-06 1.305e-06 1.594e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.204e-06 1.393e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.548 3.548 3.549 100.00% Amr::coarseTimeStep() 10 3.322 3.322 3.322 93.60% Amr::timeStep() 10 3.309 3.31 3.311 93.29% Castro::advance() 10 3.293 3.293 3.294 92.82% Castro::subcycle_advance_ctu() 10 3.213 3.22 3.233 91.10% Castro::do_advance_ctu() 10 3.213 3.22 3.233 91.10% Castro::construct_ctu_hydro_source() 10 2.31 2.355 2.387 67.25% Gravity::make_radial_gravity() 21 0.3326 0.3451 0.3527 9.94% Gravity::get_new_grav_vector() 11 0.2235 0.2261 0.2279 6.42% Amr::init() 1 0.2099 0.2101 0.2102 5.92% Castro::construct_old_gravity() 10 0.1937 0.201 0.2085 5.88% Gravity::get_old_grav_vector() 10 0.193 0.2003 0.2078 5.86% Castro::construct_new_gravity() 10 0.2003 0.202 0.203 5.72% Amr::initialInit() 1 0.1944 0.1948 0.195 5.50% FillPatchIterator::Initialize 41 0.1471 0.1654 0.1917 5.40% Castro::initialize_do_advance() 10 0.1474 0.1601 0.1676 4.72% Amr::InitializeInit() 1 0.06048 0.1065 0.1669 4.70% Amr::defBaseLevel() 1 0.06047 0.1065 0.1669 4.70% FillPatchSingleLevel 41 0.1087 0.1226 0.1555 4.38% Castro::initData() 1 0.04405 0.08804 0.144 4.06% Amr::FinalizeInit() 1 0.02748 0.08832 0.1343 3.78% Castro::estTimeStep() 21 0.03285 0.0919 0.1305 3.68% Castro::expand_state() 10 0.098 0.1127 0.1266 3.57% Castro::clean_state() 62 0.1136 0.1171 0.1211 3.41% FabArray::ParallelCopy() 41 0.07494 0.08603 0.1188 3.35% Castro::computeInitialDt() 2 0.002017 0.0626 0.1085 3.06% FabArray::ParallelCopy_finish() 41 0.03255 0.0451 0.08138 2.29% FabArray::setVal() 143 0.05826 0.06724 0.07821 2.20% amrex::Copy() 193 0.06011 0.0705 0.07775 2.19% Castro::initialize_advance() 10 0.05591 0.0696 0.07652 2.16% Castro::do_new_sources() 10 0.05986 0.06634 0.07557 2.13% Castro::computeTemp() 63 0.06585 0.06997 0.07323 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04815 0.05016 0.0525 1.48% Castro::reset_internal_energy(Fab) 1008 0.04785 0.04986 0.05222 1.47% Castro::do_old_sources() 10 0.04027 0.04488 0.04615 1.30% FabArray::ParallelCopy_nowait() 41 0.03737 0.04086 0.04241 1.20% Castro::normalize_species() 62 0.04147 0.04193 0.04238 1.19% StateDataPhysBCFunct::() 41 0.03344 0.03655 0.03946 1.11% StateData::FillBoundary(geom) 41 0.03335 0.03645 0.03935 1.11% Castro::construct_new_source() 50 0.02968 0.03248 0.03665 1.03% Castro::construct_new_gravity_source() 10 0.02358 0.02627 0.0302 0.85% Gravity::interpolate_monopole_grav() 21 0.02827 0.02851 0.0288 0.81% Amr::writePlotFile() 2 0.02547 0.02563 0.02588 0.73% Castro::post_init() 1 0.02516 0.02527 0.02534 0.71% Castro::post_timestep() 10 0.01512 0.01592 0.01659 0.47% VisMF::Write(FabArray) 2 0.0129 0.01364 0.0161 0.45% Castro::apply_source_to_state() 20 0.01186 0.01371 0.01468 0.41% FabArray::Saxpy() 20 0.01181 0.01366 0.01463 0.41% Castro::Castro() 1 0.01048 0.01171 0.01452 0.41% Castro::check_for_nan() 20 0.01035 0.01113 0.01224 0.34% MultiFab::contains_nan() 20 0.01033 0.0111 0.01222 0.34% FabArray::setDomainBndry() 41 0.007808 0.01003 0.01136 0.32% Castro::construct_old_source() 50 0.007582 0.01034 0.01108 0.31% Castro::construct_old_gravity_source() 10 0.007531 0.01027 0.011 0.31% Castro::initMFs() 1 0.006695 0.007778 0.0103 0.29% Castro::computeNewDt() 9 0.008731 0.008734 0.008738 0.25% AmrLevel::AmrLevel(dm) 1 0.00572 0.006503 0.008306 0.23% StateData::define() 4 0.005698 0.006477 0.008282 0.23% Castro::enforce_min_density() 62 0.005596 0.00599 0.006387 0.18% Castro::swap_state_time_levels() 10 0.003316 0.004342 0.004693 0.13% Castro::finalize_advance() 10 0.003029 0.003429 0.003876 0.11% Castro::buildMetrics() 1 0.001695 0.002008 0.002574 0.07% Castro::finalize_do_advance() 10 0.0006487 0.001455 0.001827 0.05% Castro::post_regrid() 1 0.001374 0.001563 0.001646 0.05% Amr::InitAmr() 1 0.0002713 0.0003701 0.000538 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.188e-05 0.0001936 0.0002958 0.01% DistributionMapping::LeastUsedCPUs() 1 6.707e-06 0.0001876 0.0002886 0.01% Castro::enforce_consistent_e() 1 7.922e-05 9.902e-05 0.0001274 0.00% FabArrayBase::getCPC() 41 6.546e-05 8.407e-05 0.0001074 0.00% Amr::writeSmallPlotFile() 1 2.618e-05 6.031e-05 7.374e-05 0.00% FabArrayBase::CPC::define() 2 2.198e-05 2.471e-05 3.228e-05 0.00% Castro::enforce_speed_limit() 62 2.507e-05 2.763e-05 3.17e-05 0.00% Amr::initSubcycle() 1 8.524e-06 1.069e-05 1.653e-05 0.00% Castro::create_source_corrector() 10 7.691e-06 9.606e-06 1.58e-05 0.00% Gravity::set_mass_offset() 10 8.855e-06 1.014e-05 1.271e-05 0.00% Gravity::swapTimeLevels() 10 7.86e-06 1.046e-05 1.198e-05 0.00% Castro::FluxRegCrseInit 10 6.156e-06 8.017e-06 9.978e-06 0.00% Castro::retry_advance_ctu() 10 4.325e-06 5.281e-06 6.638e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.214e-06 2.739e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.204e-06 1.393e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.12-16-g96d8c53fbf09) finalized