MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.12-17-gc2decc83820a) initialized Starting run at 06:47:13 UTC on 2022-12-20. Successfully read inputs file ... Castro git describe: 22.12-5-g3ad2ef0c0 AMReX git describe: 22.12-17-gc2decc838 Microphysics git describe: 22.12-23-gacd17b4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017978949 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359981941 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353997334 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328452225 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326986582 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347700336 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33920667 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310916212 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309549384 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310762073 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313316303 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010305399 seconds Ending run at 06:47:16 UTC on 2022-12-20. Run time = 3.510547989 Run time without initialization = 3.31858617 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.509 ... 3.51 ... 3.511 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3203 2.3489 2.3697 67.50% Gravity::make_radial_gravity() 21 0.3159 0.3236 0.334 9.51% Castro::estTimeStep() 21 0.02886 0.07569 0.1252 3.57% Castro::initData() 1 0.03875 0.07993 0.1197 3.41% FabArray::setVal() 143 0.06549 0.07473 0.08649 2.46% Castro::do_advance_ctu() 10 0.03503 0.05391 0.0847 2.41% amrex::Copy() 193 0.06253 0.07161 0.0795 2.26% FabArray::ParallelCopy_finish() 41 0.03415 0.05186 0.0637 1.81% Castro::reset_internal_energy(Fab) 1008 0.04808 0.04937 0.05056 1.44% Castro::normalize_species() 62 0.04064 0.04201 0.04309 1.23% FabArray::ParallelCopy_nowait() 41 0.03734 0.04101 0.04286 1.22% StateData::FillBoundary(geom) 41 0.0342 0.03644 0.03864 1.10% FillPatchIterator::Initialize 41 0.0297 0.03363 0.03667 1.04% Castro::construct_new_gravity_source() 10 0.02354 0.02724 0.03308 0.94% Gravity::interpolate_monopole_grav() 21 0.0281 0.02866 0.03038 0.87% Castro::initialize_do_advance() 10 0.01278 0.01754 0.02052 0.58% Castro::computeTemp() 63 0.01953 0.02001 0.02047 0.58% VisMF::Write(FabArray) 2 0.01388 0.01459 0.01724 0.49% FabArray::Saxpy() 20 0.01243 0.01422 0.01497 0.43% Castro::initialize_advance() 10 0.009861 0.01209 0.01455 0.41% MultiFab::contains_nan() 20 0.01013 0.01114 0.01225 0.35% FabArray::setDomainBndry() 41 0.007698 0.01032 0.01207 0.34% Amr::writePlotFile() 2 0.008349 0.0102 0.01148 0.33% Castro::construct_old_gravity_source() 10 0.007509 0.01033 0.01109 0.32% Castro::initMFs() 1 0.006765 0.007187 0.008233 0.23% StateData::define() 4 0.00572 0.006171 0.006904 0.20% main() 1 0.0051 0.006166 0.00675 0.19% Castro::construct_new_source() 50 0.005757 0.006148 0.006362 0.18% Castro::enforce_min_density() 62 0.005598 0.005959 0.006246 0.18% Castro::swap_state_time_levels() 10 0.003344 0.004413 0.004674 0.13% Gravity::get_new_grav_vector() 11 0.003133 0.003683 0.003994 0.11% Amr::coarseTimeStep() 10 0.001197 0.002203 0.002721 0.08% Gravity::get_old_grav_vector() 10 0.001802 0.002213 0.002552 0.07% Castro::finalize_do_advance() 10 0.0006475 0.001676 0.002059 0.06% Castro::buildMetrics() 1 0.00161 0.001691 0.001864 0.05% Castro::expand_state() 10 0.0007347 0.0008956 0.001125 0.03% Amr::InitAmr() 1 0.0002785 0.0003839 0.0005224 0.01% Amr::timeStep() 10 0.0001762 0.0002579 0.0005091 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002883 0.0002961 0.000313 0.01% DistributionMapping::LeastUsedCPUs() 1 6.864e-06 0.0001773 0.000284 0.01% StateDataPhysBCFunct::() 41 0.0001085 0.000137 0.0001747 0.00% Castro::clean_state() 62 0.0001318 0.000145 0.0001568 0.00% Castro::Castro() 1 5.985e-05 7.652e-05 0.0001057 0.00% FabArray::ParallelCopy() 41 6.469e-05 7.941e-05 0.0001055 0.00% Castro::finalize_advance() 10 8.79e-05 9.538e-05 0.0001053 0.00% Castro::enforce_consistent_e() 1 8.123e-05 8.982e-05 9.422e-05 0.00% Amr::writeSmallPlotFile() 1 2.517e-05 6.921e-05 8.347e-05 0.00% Castro::construct_old_source() 50 4.749e-05 6.996e-05 8.28e-05 0.00% FillPatchSingleLevel 41 6.469e-05 7.5e-05 8.159e-05 0.00% Amr::FinalizeInit() 1 3.731e-06 1.297e-05 7.176e-05 0.00% Castro::do_old_sources() 10 5.069e-05 6.031e-05 7.011e-05 0.00% FabArrayBase::getCPC() 41 4.385e-05 5.714e-05 6.894e-05 0.00% Castro::do_new_sources() 10 5.161e-05 6.07e-05 6.578e-05 0.00% Castro::subcycle_advance_ctu() 10 3.998e-05 5.198e-05 6.293e-05 0.00% Castro::post_timestep() 10 2.039e-05 3.419e-05 6.044e-05 0.00% Castro::construct_new_gravity() 10 3.437e-05 4.3e-05 5.128e-05 0.00% Castro::apply_source_to_state() 20 3.625e-05 4.322e-05 5.088e-05 0.00% Castro::construct_old_gravity() 10 3.39e-05 3.908e-05 4.792e-05 0.00% Castro::advance() 10 3.552e-05 4.196e-05 4.671e-05 0.00% Castro::enforce_speed_limit() 62 2.488e-05 3.079e-05 4.022e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.519e-05 2.91e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.691e-05 2.218e-05 2.861e-05 0.00% Castro::check_for_nan() 20 2.13e-05 2.392e-05 2.723e-05 0.00% Amr::defBaseLevel() 1 1.251e-05 1.4e-05 1.668e-05 0.00% Amr::initSubcycle() 1 8.71e-06 1.114e-05 1.634e-05 0.00% Gravity::swapTimeLevels() 10 9.992e-06 1.173e-05 1.336e-05 0.00% Castro::create_source_corrector() 10 8.426e-06 1.011e-05 1.126e-05 0.00% Gravity::set_mass_offset() 10 9.511e-06 1.058e-05 1.098e-05 0.00% Castro::computeNewDt() 9 7.401e-06 8.244e-06 1.009e-05 0.00% Castro::FluxRegCrseInit 10 7.62e-06 8.662e-06 9.745e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.599e-06 4.522e-06 6.844e-06 0.00% Castro::retry_advance_ctu() 10 4.714e-06 5.629e-06 6.346e-06 0.00% Amr::InitializeInit() 1 1.928e-06 2.735e-06 5.53e-06 0.00% Castro::post_init() 1 2.548e-06 3.761e-06 5.219e-06 0.00% Castro::computeInitialDt() 2 3.36e-06 4.194e-06 4.717e-06 0.00% Castro::post_regrid() 1 2.355e-06 3.081e-06 3.723e-06 0.00% Castro::FluxRegFineAdd() 10 1.879e-06 2.3e-06 2.762e-06 0.00% Amr::init() 1 1.62e-06 2.133e-06 2.529e-06 0.00% Amr::initialInit() 1 1.048e-06 1.326e-06 1.584e-06 0.00% DistributionMapping::Distribute() 1 8.3e-07 1.064e-06 1.341e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.509 3.51 3.511 100.00% Amr::coarseTimeStep() 10 3.302 3.302 3.302 94.05% Amr::timeStep() 10 3.289 3.29 3.291 93.73% Castro::advance() 10 3.273 3.273 3.274 93.27% Castro::subcycle_advance_ctu() 10 3.184 3.191 3.199 91.12% Castro::do_advance_ctu() 10 3.184 3.191 3.199 91.12% Castro::construct_ctu_hydro_source() 10 2.32 2.349 2.37 67.50% Gravity::make_radial_gravity() 21 0.3329 0.3404 0.3478 9.91% Gravity::get_new_grav_vector() 11 0.2264 0.2279 0.2294 6.54% Castro::construct_old_gravity() 10 0.1913 0.199 0.2052 5.85% Gravity::get_old_grav_vector() 10 0.1907 0.1981 0.2046 5.83% Castro::construct_new_gravity() 10 0.1984 0.1994 0.2005 5.71% Amr::init() 1 0.1913 0.1914 0.1915 5.46% FillPatchIterator::Initialize 41 0.1603 0.1736 0.1896 5.40% Castro::initialize_do_advance() 10 0.1518 0.1639 0.1781 5.07% Amr::initialInit() 1 0.1733 0.1742 0.1752 4.99% Amr::InitializeInit() 1 0.05997 0.1016 0.1423 4.05% Amr::defBaseLevel() 1 0.05997 0.1016 0.1423 4.05% FillPatchSingleLevel 41 0.1128 0.1297 0.1412 4.02% Castro::expand_state() 10 0.1022 0.1163 0.1314 3.74% Castro::estTimeStep() 21 0.02886 0.07569 0.1252 3.57% Castro::initData() 1 0.04303 0.08396 0.1232 3.51% Castro::clean_state() 62 0.1138 0.1168 0.1186 3.38% Amr::FinalizeInit() 1 0.03142 0.07258 0.1148 3.27% FabArray::ParallelCopy() 41 0.0758 0.09303 0.1023 2.92% FabArray::setVal() 143 0.06549 0.07473 0.08649 2.46% Castro::initialize_advance() 10 0.07085 0.07847 0.08623 2.46% Castro::computeInitialDt() 2 0.002208 0.04278 0.0845 2.41% Castro::do_new_sources() 10 0.06 0.0681 0.08029 2.29% amrex::Copy() 193 0.06253 0.07161 0.0795 2.26% Castro::computeTemp() 63 0.06825 0.06968 0.07108 2.02% FabArray::ParallelCopy_finish() 41 0.03415 0.05186 0.0637 1.81% Castro::reset_internal_energy(MultiFab) 63 0.04837 0.04967 0.05086 1.45% Castro::reset_internal_energy(Fab) 1008 0.04808 0.04937 0.05056 1.44% Castro::do_old_sources() 10 0.04102 0.04549 0.04656 1.33% Castro::normalize_species() 62 0.04064 0.04201 0.04309 1.23% FabArray::ParallelCopy_nowait() 41 0.03743 0.04109 0.04294 1.22% Castro::construct_new_source() 50 0.02952 0.03339 0.03937 1.12% StateDataPhysBCFunct::() 41 0.03438 0.03658 0.03875 1.10% StateData::FillBoundary(geom) 41 0.0342 0.03644 0.03864 1.10% Castro::construct_new_gravity_source() 10 0.02354 0.02724 0.03308 0.94% Gravity::interpolate_monopole_grav() 21 0.0281 0.02866 0.03038 0.87% Castro::post_init() 1 0.02846 0.02939 0.03011 0.86% Amr::writePlotFile() 2 0.02666 0.02764 0.02849 0.81% VisMF::Write(FabArray) 2 0.01388 0.01459 0.01724 0.49% Castro::post_timestep() 10 0.01546 0.01598 0.01635 0.47% Castro::apply_source_to_state() 20 0.01248 0.01427 0.01502 0.43% FabArray::Saxpy() 20 0.01243 0.01422 0.01497 0.43% Castro::check_for_nan() 20 0.01015 0.01116 0.01227 0.35% MultiFab::contains_nan() 20 0.01013 0.01114 0.01225 0.35% Castro::Castro() 1 0.01068 0.01124 0.0122 0.35% FabArray::setDomainBndry() 41 0.007698 0.01032 0.01207 0.34% Castro::construct_old_source() 50 0.007557 0.0104 0.01117 0.32% Castro::construct_old_gravity_source() 10 0.007509 0.01033 0.01109 0.32% Castro::computeNewDt() 9 0.008512 0.008516 0.008523 0.24% Castro::initMFs() 1 0.006765 0.007187 0.008233 0.23% AmrLevel::AmrLevel(dm) 1 0.005737 0.006194 0.006933 0.20% StateData::define() 4 0.00572 0.006171 0.006904 0.20% Castro::enforce_min_density() 62 0.005598 0.005959 0.006246 0.18% Castro::swap_state_time_levels() 10 0.003344 0.004413 0.004674 0.13% Castro::finalize_advance() 10 0.002966 0.003672 0.004379 0.12% Castro::finalize_do_advance() 10 0.0006475 0.001676 0.002059 0.06% Castro::buildMetrics() 1 0.001748 0.001819 0.002014 0.06% Castro::post_regrid() 1 0.001498 0.001645 0.00191 0.05% Amr::InitAmr() 1 0.0002886 0.0003951 0.0005373 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.217e-05 0.0001829 0.0002922 0.01% DistributionMapping::LeastUsedCPUs() 1 6.864e-06 0.0001773 0.000284 0.01% FabArrayBase::getCPC() 41 7.245e-05 8.233e-05 9.426e-05 0.00% Castro::enforce_consistent_e() 1 8.123e-05 8.982e-05 9.422e-05 0.00% Amr::writeSmallPlotFile() 1 2.517e-05 6.921e-05 8.347e-05 0.00% Castro::enforce_speed_limit() 62 2.488e-05 3.079e-05 4.022e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.519e-05 2.91e-05 0.00% Amr::initSubcycle() 1 8.71e-06 1.114e-05 1.634e-05 0.00% Gravity::swapTimeLevels() 10 9.992e-06 1.173e-05 1.336e-05 0.00% Castro::create_source_corrector() 10 8.426e-06 1.011e-05 1.126e-05 0.00% Gravity::set_mass_offset() 10 9.511e-06 1.058e-05 1.098e-05 0.00% Castro::FluxRegCrseInit 10 7.62e-06 8.662e-06 9.745e-06 0.00% Castro::retry_advance_ctu() 10 4.714e-06 5.629e-06 6.346e-06 0.00% Castro::FluxRegFineAdd() 10 1.879e-06 2.3e-06 2.762e-06 0.00% DistributionMapping::Distribute() 1 8.3e-07 1.064e-06 1.341e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.12-17-gc2decc83820a) finalized