MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.12-24-gea7e8a507e77) initialized Starting run at 06:47:33 UTC on 2022-12-27. Successfully read inputs file ... Castro git describe: 22.12-11-g45d01ffe1 AMReX git describe: 22.12-24-gea7e8a507 Microphysics git describe: 22.12-28-gdc4a7e21 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01590512 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356614086 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342262364 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329542707 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330756513 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337471088 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358206957 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313816904 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311483983 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309760719 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314471194 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010739962 seconds Ending run at 06:47:36 UTC on 2022-12-27. Run time = 3.505097665 Run time without initialization = 3.322655117 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.504 ... 3.505 ... 3.505 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2819 2.3452 2.3667 67.52% Gravity::make_radial_gravity() 21 0.31 0.319 0.3363 9.59% Castro::do_advance_ctu() 10 0.03009 0.04969 0.1162 3.31% Castro::initData() 1 0.03883 0.07788 0.115 3.28% Castro::estTimeStep() 21 0.02949 0.07082 0.1101 3.14% FabArray::setVal() 143 0.06421 0.07424 0.08671 2.47% FabArray::ParallelCopy_finish() 41 0.03497 0.05886 0.08584 2.45% amrex::Copy() 193 0.06334 0.07528 0.08528 2.43% Castro::reset_internal_energy(Fab) 1008 0.04821 0.04998 0.05311 1.52% Castro::normalize_species() 62 0.04066 0.04222 0.04411 1.26% FabArray::ParallelCopy_nowait() 41 0.03465 0.04143 0.04352 1.24% StateData::FillBoundary(geom) 41 0.03294 0.0369 0.04106 1.17% FillPatchIterator::Initialize 41 0.0279 0.03544 0.04065 1.16% Gravity::interpolate_monopole_grav() 21 0.02802 0.02824 0.02838 0.81% Castro::construct_new_gravity_source() 10 0.02305 0.02511 0.02674 0.76% Castro::initialize_do_advance() 10 0.01181 0.01859 0.02275 0.65% Castro::computeTemp() 63 0.01912 0.02005 0.02068 0.59% VisMF::Write(FabArray) 2 0.0134 0.01426 0.01695 0.48% FabArray::Saxpy() 20 0.01231 0.01401 0.01542 0.44% Castro::initialize_advance() 10 0.009801 0.01195 0.01412 0.40% FabArray::setDomainBndry() 41 0.007419 0.01057 0.01228 0.35% MultiFab::contains_nan() 20 0.009995 0.01082 0.01191 0.34% Castro::construct_old_gravity_source() 10 0.007001 0.01016 0.01128 0.32% Amr::writePlotFile() 2 0.006971 0.009568 0.01028 0.29% StateData::define() 4 0.005588 0.007058 0.008591 0.25% Castro::initMFs() 1 0.00688 0.007312 0.007909 0.23% Castro::construct_new_source() 50 0.00564 0.006392 0.006813 0.19% Castro::enforce_min_density() 62 0.005465 0.006053 0.006605 0.19% main() 1 0.004906 0.00589 0.006518 0.19% Amr::coarseTimeStep() 10 0.002558 0.004054 0.005956 0.17% Castro::swap_state_time_levels() 10 0.003339 0.004374 0.004693 0.13% Gravity::get_new_grav_vector() 11 0.002997 0.003738 0.004071 0.12% Gravity::get_old_grav_vector() 10 0.001763 0.002531 0.002945 0.08% Castro::finalize_do_advance() 10 0.0005649 0.001704 0.002156 0.06% Castro::buildMetrics() 1 0.001589 0.001737 0.00192 0.05% Castro::expand_state() 10 0.0005788 0.0008013 0.001067 0.03% Amr::InitAmr() 1 0.0003016 0.0004307 0.0006511 0.02% Amr::timeStep() 10 0.0001718 0.0002377 0.0005235 0.01% DistributionMapping::LeastUsedCPUs() 1 8.908e-06 0.000271 0.0004226 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002775 0.0003082 0.000357 0.01% Castro::clean_state() 62 0.0001399 0.0001533 0.0001754 0.01% StateDataPhysBCFunct::() 41 9.257e-05 0.0001063 0.0001283 0.00% Amr::FinalizeInit() 1 4.115e-06 1.865e-05 0.0001145 0.00% Castro::finalize_advance() 10 7.716e-05 9.761e-05 0.0001142 0.00% Castro::enforce_consistent_e() 1 7.744e-05 8.769e-05 0.0001029 0.00% FabArray::ParallelCopy() 41 5.957e-05 7.19e-05 8.215e-05 0.00% Amr::writeSmallPlotFile() 1 3.651e-05 4.826e-05 7.711e-05 0.00% Castro::construct_old_source() 50 4.558e-05 6.467e-05 7.601e-05 0.00% FillPatchSingleLevel 41 5.612e-05 6.824e-05 7.599e-05 0.00% Castro::do_new_sources() 10 5.033e-05 6.124e-05 7.486e-05 0.00% FabArrayBase::getCPC() 41 4.084e-05 5.391e-05 7.417e-05 0.00% Castro::Castro() 1 5.652e-05 6.514e-05 7.184e-05 0.00% Castro::do_old_sources() 10 4.461e-05 5.953e-05 6.928e-05 0.00% Castro::advance() 10 3.397e-05 4.373e-05 6.562e-05 0.00% Castro::apply_source_to_state() 20 3.575e-05 4.417e-05 5.429e-05 0.00% Castro::subcycle_advance_ctu() 10 3.683e-05 4.508e-05 5.251e-05 0.00% Castro::construct_new_gravity() 10 3.402e-05 3.792e-05 4.757e-05 0.00% Castro::construct_old_gravity() 10 3.573e-05 3.867e-05 4.707e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.567e-05 2.544e-05 4.167e-05 0.00% Castro::enforce_speed_limit() 62 2.361e-05 2.765e-05 3.523e-05 0.00% Castro::post_timestep() 10 1.501e-05 2.164e-05 3.093e-05 0.00% FabArrayBase::CPC::define() 2 2.076e-05 2.356e-05 2.99e-05 0.00% Castro::check_for_nan() 20 2.014e-05 2.338e-05 2.767e-05 0.00% Gravity::set_mass_offset() 10 8.89e-06 1.191e-05 2.181e-05 0.00% Amr::defBaseLevel() 1 1.323e-05 1.533e-05 2.031e-05 0.00% Amr::initSubcycle() 1 1.002e-05 1.305e-05 1.665e-05 0.00% Castro::computeNewDt() 9 6.963e-06 9.132e-06 1.493e-05 0.00% Gravity::swapTimeLevels() 10 8.872e-06 1.139e-05 1.419e-05 0.00% Castro::FluxRegCrseInit 10 6.922e-06 8.86e-06 1.408e-05 0.00% Castro::create_source_corrector() 10 8.5e-06 9.495e-06 1.161e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.836e-06 4.712e-06 6.702e-06 0.00% Amr::InitializeInit() 1 2.321e-06 3.497e-06 6.233e-06 0.00% Castro::retry_advance_ctu() 10 4.823e-06 5.635e-06 6.089e-06 0.00% Castro::computeInitialDt() 2 3.589e-06 4.223e-06 5.474e-06 0.00% Castro::post_init() 1 2.746e-06 3.757e-06 4.971e-06 0.00% Castro::post_regrid() 1 2.444e-06 3.293e-06 4.269e-06 0.00% Castro::FluxRegFineAdd() 10 1.921e-06 2.346e-06 3.236e-06 0.00% Amr::init() 1 1.965e-06 2.412e-06 3.074e-06 0.00% Amr::initialInit() 1 1.005e-06 1.349e-06 1.737e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.162e-06 1.359e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.504 3.505 3.505 100.00% Amr::coarseTimeStep() 10 3.305 3.305 3.305 94.30% Amr::timeStep() 10 3.287 3.289 3.29 93.87% Castro::advance() 10 3.271 3.272 3.275 93.43% Castro::subcycle_advance_ctu() 10 3.179 3.19 3.199 91.26% Castro::do_advance_ctu() 10 3.179 3.19 3.199 91.26% Castro::construct_ctu_hydro_source() 10 2.282 2.345 2.367 67.52% Gravity::make_radial_gravity() 21 0.3277 0.3365 0.3509 10.01% Gravity::get_new_grav_vector() 11 0.2187 0.2197 0.2208 6.30% Castro::construct_old_gravity() 10 0.1969 0.2029 0.2143 6.11% Gravity::get_old_grav_vector() 10 0.1957 0.202 0.2136 6.09% FillPatchIterator::Initialize 41 0.1629 0.1835 0.1999 5.70% Castro::construct_new_gravity() 10 0.194 0.1946 0.1954 5.57% Castro::initialize_do_advance() 10 0.1591 0.1751 0.1881 5.37% Amr::init() 1 0.1816 0.1818 0.182 5.19% Amr::initialInit() 1 0.1655 0.1658 0.166 4.74% FillPatchSingleLevel 41 0.1128 0.1375 0.1538 4.39% Castro::expand_state() 10 0.1097 0.1262 0.1402 4.00% Amr::InitializeInit() 1 0.05842 0.09999 0.1375 3.92% Amr::defBaseLevel() 1 0.05841 0.09999 0.1374 3.92% Castro::clean_state() 62 0.113 0.1178 0.1234 3.52% FabArray::ParallelCopy() 41 0.07638 0.1004 0.1206 3.44% Castro::initData() 1 0.04241 0.08167 0.119 3.39% Castro::estTimeStep() 21 0.02949 0.07082 0.1101 3.14% Amr::FinalizeInit() 1 0.02852 0.06584 0.1076 3.07% Castro::initialize_advance() 10 0.0699 0.07893 0.09002 2.57% FabArray::setVal() 143 0.06421 0.07424 0.08671 2.47% FabArray::ParallelCopy_finish() 41 0.03497 0.05886 0.08584 2.45% amrex::Copy() 193 0.06334 0.07528 0.08528 2.43% Castro::computeInitialDt() 2 0.002067 0.03939 0.08111 2.31% Castro::computeTemp() 63 0.06764 0.07033 0.07409 2.11% Castro::do_new_sources() 10 0.0605 0.06505 0.07347 2.10% Castro::reset_internal_energy(MultiFab) 63 0.04853 0.05029 0.05342 1.52% Castro::reset_internal_energy(Fab) 1008 0.04821 0.04998 0.05311 1.52% Castro::do_old_sources() 10 0.03869 0.04629 0.05017 1.43% Castro::normalize_species() 62 0.04066 0.04222 0.04411 1.26% FabArray::ParallelCopy_nowait() 41 0.03473 0.04151 0.04361 1.24% StateDataPhysBCFunct::() 41 0.03305 0.03701 0.04116 1.17% StateData::FillBoundary(geom) 41 0.03294 0.0369 0.04106 1.17% Castro::construct_new_source() 50 0.02869 0.0315 0.03355 0.96% Gravity::interpolate_monopole_grav() 21 0.02802 0.02824 0.02838 0.81% Amr::writePlotFile() 2 0.02668 0.02683 0.02707 0.77% Castro::construct_new_gravity_source() 10 0.02305 0.02511 0.02674 0.76% Castro::post_init() 1 0.02571 0.02592 0.02608 0.74% Castro::post_timestep() 10 0.01543 0.0162 0.01716 0.49% VisMF::Write(FabArray) 2 0.0134 0.01426 0.01695 0.48% Castro::apply_source_to_state() 20 0.01234 0.01405 0.01548 0.44% FabArray::Saxpy() 20 0.01231 0.01401 0.01542 0.44% FabArray::setDomainBndry() 41 0.007419 0.01057 0.01228 0.35% Castro::check_for_nan() 20 0.01002 0.01085 0.01193 0.34% MultiFab::contains_nan() 20 0.009995 0.01082 0.01191 0.34% Castro::Castro() 1 0.009953 0.01094 0.01167 0.33% Castro::computeNewDt() 9 0.01145 0.01148 0.01152 0.33% Castro::construct_old_source() 50 0.007046 0.01023 0.01135 0.32% Castro::construct_old_gravity_source() 10 0.007001 0.01016 0.01128 0.32% AmrLevel::AmrLevel(dm) 1 0.005604 0.007083 0.008616 0.25% StateData::define() 4 0.005588 0.007058 0.008591 0.25% Castro::initMFs() 1 0.00688 0.007312 0.007909 0.23% Castro::enforce_min_density() 62 0.005465 0.006053 0.006605 0.19% Castro::finalize_advance() 10 0.002879 0.003429 0.005287 0.15% Castro::swap_state_time_levels() 10 0.003339 0.004374 0.004693 0.13% Castro::finalize_do_advance() 10 0.0005649 0.001704 0.002156 0.06% Castro::buildMetrics() 1 0.001706 0.001868 0.002062 0.06% Castro::post_regrid() 1 0.001524 0.001613 0.001678 0.05% Amr::InitAmr() 1 0.0003116 0.0004437 0.0006677 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.4e-05 0.0002769 0.0004304 0.01% DistributionMapping::LeastUsedCPUs() 1 8.908e-06 0.000271 0.0004226 0.01% Castro::enforce_consistent_e() 1 7.744e-05 8.769e-05 0.0001029 0.00% FabArrayBase::getCPC() 41 6.513e-05 7.747e-05 9.493e-05 0.00% Amr::writeSmallPlotFile() 1 3.651e-05 4.826e-05 7.711e-05 0.00% Castro::enforce_speed_limit() 62 2.361e-05 2.765e-05 3.523e-05 0.00% FabArrayBase::CPC::define() 2 2.076e-05 2.356e-05 2.99e-05 0.00% Gravity::set_mass_offset() 10 8.89e-06 1.191e-05 2.181e-05 0.00% Amr::initSubcycle() 1 1.002e-05 1.305e-05 1.665e-05 0.00% Gravity::swapTimeLevels() 10 8.872e-06 1.139e-05 1.419e-05 0.00% Castro::FluxRegCrseInit 10 6.922e-06 8.86e-06 1.408e-05 0.00% Castro::create_source_corrector() 10 8.5e-06 9.495e-06 1.161e-05 0.00% Castro::retry_advance_ctu() 10 4.823e-06 5.635e-06 6.089e-06 0.00% Castro::FluxRegFineAdd() 10 1.921e-06 2.346e-06 3.236e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.162e-06 1.359e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.12-24-gea7e8a507e77) finalized