MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.12-24-gea7e8a507e77) initialized Starting run at 06:47:31 UTC on 2022-12-30. Successfully read inputs file ... Castro git describe: 22.12-11-g45d01ffe1 AMReX git describe: 22.12-24-gea7e8a507 Microphysics git describe: 22.12-28-gdc4a7e21 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015564557 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361275801 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341504359 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.38212278 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330033839 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35513257 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330482893 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311929344 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310597614 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31418923 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312421399 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010236549 seconds Ending run at 06:47:34 UTC on 2022-12-30. Run time = 3.545465049 Run time without initialization = 3.367091338 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.544 ... 3.545 ... 3.546 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2895 2.3471 2.4372 68.74% Gravity::make_radial_gravity() 21 0.3156 0.324 0.3391 9.56% Castro::do_advance_ctu() 10 0.03457 0.1255 0.1855 5.23% Castro::initData() 1 0.0385 0.07796 0.1117 3.15% Castro::estTimeStep() 21 0.02077 0.0632 0.1079 3.04% FabArray::setVal() 143 0.06379 0.0698 0.08036 2.27% amrex::Copy() 193 0.06036 0.07142 0.07845 2.21% FabArray::ParallelCopy_finish() 41 0.03362 0.04531 0.07361 2.08% Castro::reset_internal_energy(Fab) 1008 0.04806 0.04939 0.0512 1.44% FabArray::ParallelCopy_nowait() 41 0.03484 0.04063 0.04256 1.20% Castro::normalize_species() 62 0.04103 0.0415 0.04253 1.20% StateData::FillBoundary(geom) 41 0.03358 0.03611 0.03881 1.09% FillPatchIterator::Initialize 41 0.02824 0.03302 0.03574 1.01% Castro::construct_new_gravity_source() 10 0.02338 0.0258 0.02976 0.84% Gravity::interpolate_monopole_grav() 21 0.02799 0.02837 0.02873 0.81% Castro::computeTemp() 63 0.01919 0.01962 0.0202 0.57% Castro::initialize_do_advance() 10 0.01172 0.01668 0.01927 0.54% VisMF::Write(FabArray) 2 0.0134 0.014 0.01653 0.47% FabArray::Saxpy() 20 0.01201 0.01373 0.0144 0.41% Castro::initialize_advance() 10 0.008226 0.01104 0.01375 0.39% MultiFab::contains_nan() 20 0.009726 0.01075 0.01186 0.33% FabArray::setDomainBndry() 41 0.007746 0.01014 0.01143 0.32% Amr::writePlotFile() 2 0.006709 0.009459 0.01096 0.31% Castro::construct_old_gravity_source() 10 0.007215 0.01004 0.01061 0.30% Castro::initMFs() 1 0.006963 0.007399 0.00864 0.24% StateData::define() 4 0.005715 0.005937 0.0065 0.18% Castro::enforce_min_density() 62 0.005664 0.00602 0.006467 0.18% Castro::construct_new_source() 50 0.005641 0.006145 0.006449 0.18% main() 1 0.005147 0.0059 0.006365 0.18% Gravity::get_new_grav_vector() 11 0.003173 0.003794 0.005412 0.15% Castro::swap_state_time_levels() 10 0.003308 0.004328 0.004681 0.13% Amr::coarseTimeStep() 10 0.001404 0.002236 0.002831 0.08% Gravity::get_old_grav_vector() 10 0.001732 0.002344 0.002763 0.08% Castro::buildMetrics() 1 0.001628 0.001696 0.00188 0.05% Castro::finalize_do_advance() 10 0.0006477 0.001503 0.001853 0.05% Castro::expand_state() 10 0.0006269 0.0007573 0.0009542 0.03% Amr::InitAmr() 1 0.0002786 0.0003095 0.0004649 0.01% Amr::timeStep() 10 0.0001737 0.0002381 0.0004365 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002815 0.0002981 0.0003474 0.01% DistributionMapping::LeastUsedCPUs() 1 8.408e-06 0.0001755 0.0002017 0.01% Castro::clean_state() 62 0.0001371 0.0001523 0.0001696 0.00% StateDataPhysBCFunct::() 41 8.987e-05 9.842e-05 0.0001041 0.00% Castro::finalize_advance() 10 7.88e-05 9.07e-05 0.0001017 0.00% Castro::Castro() 1 5.94e-05 6.736e-05 9.382e-05 0.00% Castro::enforce_consistent_e() 1 7.304e-05 8.347e-05 8.993e-05 0.00% Amr::FinalizeInit() 1 4.164e-06 1.526e-05 8.936e-05 0.00% FabArray::ParallelCopy() 41 6.603e-05 7.217e-05 7.999e-05 0.00% FabArrayBase::getCPC() 41 3.951e-05 6.022e-05 7.844e-05 0.00% Castro::advance() 10 2.889e-05 4.526e-05 7.807e-05 0.00% Castro::do_new_sources() 10 4.864e-05 6.185e-05 7.771e-05 0.00% Amr::writeSmallPlotFile() 1 2.671e-05 6.178e-05 7.674e-05 0.00% FillPatchSingleLevel 41 5.87e-05 6.348e-05 7.238e-05 0.00% Castro::construct_old_source() 50 5.223e-05 6.395e-05 7.145e-05 0.00% Castro::do_old_sources() 10 4.886e-05 5.708e-05 7.037e-05 0.00% Castro::subcycle_advance_ctu() 10 3.524e-05 4.517e-05 5.322e-05 0.00% Castro::apply_source_to_state() 20 3.535e-05 4.098e-05 4.916e-05 0.00% Castro::construct_new_gravity() 10 3.26e-05 3.942e-05 4.848e-05 0.00% Castro::construct_old_gravity() 10 3.328e-05 3.795e-05 4.386e-05 0.00% Castro::post_timestep() 10 1.326e-05 1.946e-05 3.454e-05 0.00% Castro::enforce_speed_limit() 62 2.482e-05 2.767e-05 3.264e-05 0.00% FabArrayBase::CPC::define() 2 2.017e-05 2.445e-05 2.895e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.403e-05 2.173e-05 2.895e-05 0.00% Castro::check_for_nan() 20 2.174e-05 2.344e-05 2.766e-05 0.00% Amr::defBaseLevel() 1 1.137e-05 1.736e-05 2.666e-05 0.00% Amr::initialInit() 1 9.25e-07 3.321e-06 1.777e-05 0.00% Gravity::swapTimeLevels() 10 9.488e-06 1.092e-05 1.383e-05 0.00% Gravity::set_mass_offset() 10 8.638e-06 1.015e-05 1.105e-05 0.00% Amr::initSubcycle() 1 8.713e-06 9.57e-06 1.036e-05 0.00% Castro::create_source_corrector() 10 7.177e-06 8.922e-06 1.009e-05 0.00% Castro::FluxRegCrseInit 10 6.939e-06 8.505e-06 1.005e-05 0.00% Castro::computeNewDt() 9 7.556e-06 8.073e-06 8.567e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.62e-06 5.299e-06 6.428e-06 0.00% Castro::retry_advance_ctu() 10 4.891e-06 5.357e-06 6.1e-06 0.00% Amr::InitializeInit() 1 1.885e-06 3.201e-06 5.654e-06 0.00% Castro::computeInitialDt() 2 3.796e-06 4.42e-06 4.869e-06 0.00% Castro::post_init() 1 2.787e-06 3.58e-06 4.793e-06 0.00% Castro::post_regrid() 1 2.226e-06 3.311e-06 4.528e-06 0.00% Amr::init() 1 1.907e-06 2.394e-06 2.964e-06 0.00% Castro::FluxRegFineAdd() 10 1.812e-06 2.346e-06 2.81e-06 0.00% DistributionMapping::Distribute() 1 9.6e-07 1.088e-06 1.212e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.544 3.545 3.546 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 94.50% Amr::timeStep() 10 3.338 3.339 3.34 94.19% Castro::advance() 10 3.322 3.323 3.323 93.73% Castro::subcycle_advance_ctu() 10 3.241 3.247 3.252 91.73% Castro::do_advance_ctu() 10 3.241 3.247 3.252 91.73% Castro::construct_ctu_hydro_source() 10 2.29 2.347 2.437 68.74% Gravity::make_radial_gravity() 21 0.3328 0.3407 0.353 9.96% Gravity::get_new_grav_vector() 11 0.2218 0.2239 0.2254 6.36% Castro::construct_old_gravity() 10 0.1925 0.1986 0.209 5.90% Gravity::get_old_grav_vector() 10 0.1918 0.1979 0.2084 5.88% Castro::construct_new_gravity() 10 0.1969 0.1985 0.1995 5.63% FillPatchIterator::Initialize 41 0.1535 0.1655 0.179 5.05% Amr::init() 1 0.1778 0.1779 0.178 5.02% Castro::initialize_do_advance() 10 0.1502 0.1597 0.1676 4.73% Amr::initialInit() 1 0.1618 0.1621 0.1623 4.58% FillPatchSingleLevel 41 0.1099 0.1224 0.143 4.03% Amr::InitializeInit() 1 0.05999 0.09967 0.1331 3.75% Amr::defBaseLevel() 1 0.05999 0.09967 0.1331 3.75% Castro::expand_state() 10 0.1017 0.1131 0.1215 3.43% Castro::clean_state() 62 0.1142 0.1161 0.1185 3.34% Castro::initData() 1 0.04268 0.08198 0.1158 3.27% FabArray::ParallelCopy() 41 0.07513 0.0861 0.1086 3.06% Castro::estTimeStep() 21 0.02077 0.0632 0.1079 3.04% Amr::FinalizeInit() 1 0.02891 0.06239 0.1022 2.88% FabArray::setVal() 143 0.06379 0.0698 0.08036 2.27% amrex::Copy() 193 0.06036 0.07142 0.07845 2.21% Castro::initialize_advance() 10 0.06575 0.07222 0.07834 2.21% Castro::do_new_sources() 10 0.0604 0.06605 0.07533 2.12% Castro::computeInitialDt() 2 0.002052 0.03544 0.07515 2.12% FabArray::ParallelCopy_finish() 41 0.03362 0.04531 0.07361 2.08% Castro::computeTemp() 63 0.06819 0.06932 0.07169 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04834 0.04969 0.05149 1.45% Castro::reset_internal_energy(Fab) 1008 0.04806 0.04939 0.0512 1.44% Castro::do_old_sources() 10 0.03953 0.04467 0.04573 1.29% FabArray::ParallelCopy_nowait() 41 0.03494 0.04072 0.04264 1.20% Castro::normalize_species() 62 0.04103 0.0415 0.04253 1.20% StateDataPhysBCFunct::() 41 0.03367 0.03621 0.03891 1.10% StateData::FillBoundary(geom) 41 0.03358 0.03611 0.03881 1.09% Castro::construct_new_source() 50 0.02944 0.03195 0.0362 1.02% Castro::construct_new_gravity_source() 10 0.02338 0.0258 0.02976 0.84% Gravity::interpolate_monopole_grav() 21 0.02799 0.02837 0.02873 0.81% Castro::post_init() 1 0.02582 0.02639 0.02661 0.75% Amr::writePlotFile() 2 0.02599 0.02617 0.02643 0.75% VisMF::Write(FabArray) 2 0.0134 0.014 0.01653 0.47% Castro::post_timestep() 10 0.01554 0.01599 0.01632 0.46% Castro::apply_source_to_state() 20 0.01205 0.01377 0.01444 0.41% FabArray::Saxpy() 20 0.01201 0.01373 0.0144 0.41% Castro::Castro() 1 0.01117 0.01154 0.01238 0.35% Castro::check_for_nan() 20 0.009747 0.01077 0.01188 0.34% MultiFab::contains_nan() 20 0.009726 0.01075 0.01186 0.33% FabArray::setDomainBndry() 41 0.007746 0.01014 0.01143 0.32% Castro::construct_old_source() 50 0.007267 0.01011 0.01067 0.30% Castro::construct_old_gravity_source() 10 0.007215 0.01004 0.01061 0.30% Castro::initMFs() 1 0.006963 0.007399 0.00864 0.24% Castro::computeNewDt() 9 0.008492 0.008503 0.008513 0.24% AmrLevel::AmrLevel(dm) 1 0.005736 0.005959 0.006525 0.18% StateData::define() 4 0.005715 0.005937 0.0065 0.18% Castro::enforce_min_density() 62 0.005664 0.00602 0.006467 0.18% Castro::swap_state_time_levels() 10 0.003308 0.004328 0.004681 0.13% Castro::finalize_advance() 10 0.002895 0.003403 0.004003 0.11% Castro::buildMetrics() 1 0.001743 0.001825 0.002029 0.06% Castro::post_regrid() 1 0.001522 0.001629 0.001946 0.05% Castro::finalize_do_advance() 10 0.0006477 0.001503 0.001853 0.05% Amr::InitAmr() 1 0.0002882 0.0003191 0.0004752 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.352e-05 0.0001819 0.0002092 0.01% DistributionMapping::LeastUsedCPUs() 1 8.408e-06 0.0001755 0.0002017 0.01% FabArrayBase::getCPC() 41 6.847e-05 8.467e-05 0.0001031 0.00% Castro::enforce_consistent_e() 1 7.304e-05 8.347e-05 8.993e-05 0.00% Amr::writeSmallPlotFile() 1 2.671e-05 6.178e-05 7.674e-05 0.00% Castro::enforce_speed_limit() 62 2.482e-05 2.767e-05 3.264e-05 0.00% FabArrayBase::CPC::define() 2 2.017e-05 2.445e-05 2.895e-05 0.00% Gravity::swapTimeLevels() 10 9.488e-06 1.092e-05 1.383e-05 0.00% Gravity::set_mass_offset() 10 8.638e-06 1.015e-05 1.105e-05 0.00% Amr::initSubcycle() 1 8.713e-06 9.57e-06 1.036e-05 0.00% Castro::create_source_corrector() 10 7.177e-06 8.922e-06 1.009e-05 0.00% Castro::FluxRegCrseInit 10 6.939e-06 8.505e-06 1.005e-05 0.00% Castro::retry_advance_ctu() 10 4.891e-06 5.357e-06 6.1e-06 0.00% Castro::FluxRegFineAdd() 10 1.812e-06 2.346e-06 2.81e-06 0.00% DistributionMapping::Distribute() 1 9.6e-07 1.088e-06 1.212e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.12-24-gea7e8a507e77) finalized