MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-4-gb3241d7b368a) initialized Starting run at 06:47:16 UTC on 2023-01-04. Successfully read inputs file ... Castro git describe: 22.12-11-g45d01ffe1 AMReX git describe: 23.01-4-gb3241d7b3 Microphysics git describe: 22.12-28-gdc4a7e21 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016164164 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358914201 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.388249102 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328731409 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327482165 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353512341 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.329858622 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312363229 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313354761 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313380847 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313552094 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.053610722 seconds Ending run at 06:47:19 UTC on 2023-01-04. Run time = 3.61339209 Run time without initialization = 3.400493281 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.612 ... 3.613 ... 3.613 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3603 2.3711 2.3840 65.98% Gravity::make_radial_gravity() 21 0.3352 0.3432 0.3581 9.91% Castro::estTimeStep() 21 0.03199 0.08853 0.1425 3.94% Castro::initData() 1 0.03832 0.08461 0.1394 3.86% Castro::do_advance_ctu() 10 0.05372 0.07055 0.08431 2.33% amrex::Copy() 193 0.06043 0.06975 0.07845 2.17% FabArray::ParallelCopy_finish() 41 0.0374 0.05057 0.07834 2.17% FabArray::setVal() 143 0.05968 0.06648 0.07579 2.10% Amr::writePlotFile() 2 0.04998 0.05324 0.05503 1.52% Castro::reset_internal_energy(Fab) 1008 0.0473 0.04955 0.05308 1.47% Castro::normalize_species() 62 0.04092 0.04194 0.0438 1.21% FabArray::ParallelCopy_nowait() 41 0.03738 0.04055 0.0414 1.15% StateData::FillBoundary(geom) 41 0.03338 0.03666 0.04027 1.11% FillPatchIterator::Initialize 41 0.0298 0.0331 0.035 0.97% Castro::construct_new_gravity_source() 10 0.02317 0.02584 0.02959 0.82% Gravity::interpolate_monopole_grav() 21 0.02763 0.0281 0.02865 0.79% Castro::computeTemp() 63 0.01713 0.01928 0.02022 0.56% Castro::initialize_do_advance() 10 0.01279 0.01714 0.0199 0.55% VisMF::Write(FabArray) 2 0.01362 0.01432 0.01733 0.48% FabArray::Saxpy() 20 0.01258 0.01403 0.01489 0.41% Castro::initialize_advance() 10 0.004089 0.009949 0.0132 0.37% MultiFab::contains_nan() 20 0.01074 0.01197 0.01256 0.35% FabArray::setDomainBndry() 41 0.007772 0.01017 0.01159 0.32% Castro::construct_old_gravity_source() 10 0.008366 0.01021 0.01071 0.30% Castro::initMFs() 1 0.0067 0.007892 0.01001 0.28% StateData::define() 4 0.005611 0.006569 0.008202 0.23% main() 1 0.005243 0.006137 0.006696 0.19% Castro::construct_new_source() 50 0.005788 0.006246 0.006638 0.18% Castro::enforce_min_density() 62 0.005669 0.00606 0.006632 0.18% Castro::swap_state_time_levels() 10 0.003282 0.004379 0.005277 0.15% Gravity::get_new_grav_vector() 11 0.002949 0.003552 0.004508 0.12% Amr::coarseTimeStep() 10 0.001219 0.002354 0.00357 0.10% Gravity::get_old_grav_vector() 10 0.001964 0.002271 0.002678 0.07% Castro::buildMetrics() 1 0.001554 0.001862 0.002348 0.06% Castro::finalize_do_advance() 10 0.0006347 0.001477 0.001768 0.05% Castro::expand_state() 10 0.000671 0.0008913 0.00114 0.03% Amr::InitAmr() 1 0.000265 0.0003504 0.0004858 0.01% Amr::timeStep() 10 0.0001642 0.0002299 0.0004132 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002773 0.0002921 0.0003369 0.01% DistributionMapping::LeastUsedCPUs() 1 6.204e-06 0.000168 0.0002524 0.01% Castro::clean_state() 62 0.0001359 0.0001516 0.000176 0.00% StateDataPhysBCFunct::() 41 8.556e-05 0.0001001 0.0001155 0.00% Castro::enforce_consistent_e() 1 7.846e-05 9.184e-05 0.0001144 0.00% Castro::finalize_advance() 10 8.336e-05 9.601e-05 0.0001095 0.00% Castro::do_new_sources() 10 5.136e-05 6.416e-05 8.951e-05 0.00% FabArray::ParallelCopy() 41 6.118e-05 6.818e-05 8.932e-05 0.00% Amr::FinalizeInit() 1 3.586e-06 1.474e-05 8.727e-05 0.00% Castro::Castro() 1 5.513e-05 6.643e-05 8.31e-05 0.00% Castro::construct_old_source() 50 5.243e-05 6.368e-05 8.258e-05 0.00% FillPatchSingleLevel 41 5.938e-05 6.528e-05 7.937e-05 0.00% Amr::writeSmallPlotFile() 1 2.547e-05 5.709e-05 7.544e-05 0.00% FabArrayBase::getCPC() 41 3.651e-05 5.265e-05 7.407e-05 0.00% Castro::do_old_sources() 10 4.831e-05 5.671e-05 6.61e-05 0.00% Castro::subcycle_advance_ctu() 10 3.516e-05 4.361e-05 5.006e-05 0.00% Castro::apply_source_to_state() 20 3.395e-05 4.364e-05 4.825e-05 0.00% Castro::advance() 10 3.336e-05 3.9e-05 4.646e-05 0.00% Castro::construct_new_gravity() 10 3.191e-05 3.546e-05 4.298e-05 0.00% Castro::construct_old_gravity() 10 3.146e-05 3.607e-05 4.123e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.485e-05 2.274e-05 3.735e-05 0.00% Castro::enforce_speed_limit() 62 2.646e-05 2.878e-05 3.432e-05 0.00% Amr::defBaseLevel() 1 2.071e-05 2.454e-05 3.319e-05 0.00% Castro::check_for_nan() 20 2.136e-05 2.306e-05 2.859e-05 0.00% FabArrayBase::CPC::define() 2 2.238e-05 2.448e-05 2.736e-05 0.00% Castro::post_timestep() 10 1.449e-05 1.678e-05 1.912e-05 0.00% Amr::initSubcycle() 1 8.838e-06 1.132e-05 1.62e-05 0.00% Gravity::swapTimeLevels() 10 9.186e-06 1.077e-05 1.264e-05 0.00% Gravity::set_mass_offset() 10 8.642e-06 9.936e-06 1.13e-05 0.00% Castro::create_source_corrector() 10 6.754e-06 9.526e-06 1.126e-05 0.00% Castro::computeNewDt() 9 7.665e-06 8.236e-06 8.714e-06 0.00% Castro::FluxRegCrseInit 10 6.736e-06 7.765e-06 8.67e-06 0.00% Castro::retry_advance_ctu() 10 4.672e-06 5.521e-06 6.419e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.78e-06 4.846e-06 6.053e-06 0.00% Amr::InitializeInit() 1 1.921e-06 2.748e-06 5.666e-06 0.00% Castro::computeInitialDt() 2 3.279e-06 4.038e-06 5.072e-06 0.00% Castro::post_init() 1 2.474e-06 3.445e-06 4.137e-06 0.00% Castro::post_regrid() 1 1.972e-06 3.001e-06 3.621e-06 0.00% Amr::init() 1 1.689e-06 2.114e-06 2.807e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 2.316e-06 2.569e-06 0.00% Amr::initialInit() 1 9.78e-07 1.255e-06 1.704e-06 0.00% DistributionMapping::Distribute() 1 9.96e-07 1.176e-06 1.576e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.612 3.613 3.613 100.00% Amr::coarseTimeStep() 10 3.34 3.34 3.34 92.44% Amr::timeStep() 10 3.327 3.328 3.329 92.13% Castro::advance() 10 3.312 3.312 3.313 91.68% Castro::subcycle_advance_ctu() 10 3.23 3.239 3.251 89.96% Castro::do_advance_ctu() 10 3.23 3.239 3.251 89.96% Castro::construct_ctu_hydro_source() 10 2.36 2.371 2.384 65.98% Gravity::make_radial_gravity() 21 0.3511 0.359 0.3744 10.36% Gravity::get_new_grav_vector() 11 0.2261 0.2283 0.2301 6.37% Castro::construct_old_gravity() 10 0.2057 0.2127 0.2258 6.25% Gravity::get_old_grav_vector() 10 0.205 0.2121 0.2252 6.23% Amr::init() 1 0.2122 0.2124 0.2125 5.88% Castro::construct_new_gravity() 10 0.2001 0.2018 0.2029 5.62% Amr::initialInit() 1 0.1956 0.196 0.1964 5.43% FillPatchIterator::Initialize 41 0.1602 0.1714 0.1913 5.29% Castro::initialize_do_advance() 10 0.1573 0.1642 0.172 4.76% Amr::InitializeInit() 1 0.05806 0.1069 0.1658 4.59% Amr::defBaseLevel() 1 0.05805 0.1069 0.1658 4.59% FillPatchSingleLevel 41 0.1164 0.1281 0.1534 4.24% Castro::initData() 1 0.04211 0.0885 0.1433 3.97% Castro::estTimeStep() 21 0.03199 0.08853 0.1425 3.94% Amr::FinalizeInit() 1 0.02983 0.08908 0.1381 3.82% Castro::expand_state() 10 0.1083 0.117 0.1282 3.55% Castro::clean_state() 62 0.1115 0.1163 0.123 3.40% FabArray::ParallelCopy() 41 0.07893 0.09126 0.1159 3.21% Castro::computeInitialDt() 2 0.00213 0.06115 0.1101 3.05% Castro::initialize_advance() 10 0.05708 0.06937 0.07881 2.18% amrex::Copy() 193 0.06043 0.06975 0.07845 2.17% FabArray::ParallelCopy_finish() 41 0.0374 0.05057 0.07834 2.17% FabArray::setVal() 143 0.05968 0.06648 0.07579 2.10% Castro::do_new_sources() 10 0.05974 0.06588 0.07438 2.06% Castro::computeTemp() 63 0.06472 0.06912 0.07351 2.03% Amr::writePlotFile() 2 0.06978 0.07011 0.07033 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04758 0.04984 0.05338 1.48% Castro::reset_internal_energy(Fab) 1008 0.0473 0.04955 0.05308 1.47% Castro::do_old_sources() 10 0.04267 0.04495 0.04711 1.30% Castro::normalize_species() 62 0.04092 0.04194 0.0438 1.21% FabArray::ParallelCopy_nowait() 41 0.03748 0.04063 0.04147 1.15% StateDataPhysBCFunct::() 41 0.03348 0.03676 0.04036 1.12% StateData::FillBoundary(geom) 41 0.03338 0.03666 0.04027 1.11% Castro::construct_new_source() 50 0.02939 0.03208 0.03594 0.99% Castro::construct_new_gravity_source() 10 0.02317 0.02584 0.02959 0.82% Gravity::interpolate_monopole_grav() 21 0.02763 0.0281 0.02865 0.79% Castro::post_init() 1 0.02711 0.02751 0.02783 0.77% VisMF::Write(FabArray) 2 0.01362 0.01432 0.01733 0.48% Castro::post_timestep() 10 0.01503 0.01575 0.01623 0.45% Castro::apply_source_to_state() 20 0.01263 0.01408 0.01494 0.41% FabArray::Saxpy() 20 0.01258 0.01403 0.01489 0.41% Castro::Castro() 1 0.01003 0.01162 0.01424 0.39% Castro::check_for_nan() 20 0.01076 0.012 0.01259 0.35% MultiFab::contains_nan() 20 0.01074 0.01197 0.01256 0.35% FabArray::setDomainBndry() 41 0.007772 0.01017 0.01159 0.32% Castro::construct_old_source() 50 0.008419 0.01027 0.01077 0.30% Castro::construct_old_gravity_source() 10 0.008366 0.01021 0.01071 0.30% Castro::initMFs() 1 0.0067 0.007892 0.01001 0.28% Castro::computeNewDt() 9 0.008648 0.008655 0.008661 0.24% AmrLevel::AmrLevel(dm) 1 0.00564 0.006592 0.008224 0.23% StateData::define() 4 0.005611 0.006569 0.008202 0.23% Castro::enforce_min_density() 62 0.005669 0.00606 0.006632 0.18% Castro::swap_state_time_levels() 10 0.003282 0.004379 0.005277 0.15% Castro::finalize_advance() 10 0.002925 0.003405 0.003841 0.11% Castro::buildMetrics() 1 0.001676 0.002009 0.002562 0.07% Castro::post_regrid() 1 0.001423 0.001633 0.001913 0.05% Castro::finalize_do_advance() 10 0.0006347 0.001477 0.001768 0.05% Amr::InitAmr() 1 0.0002748 0.0003618 0.0005008 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.151e-05 0.000174 0.0002595 0.01% DistributionMapping::LeastUsedCPUs() 1 6.204e-06 0.000168 0.0002524 0.01% Castro::enforce_consistent_e() 1 7.846e-05 9.184e-05 0.0001144 0.00% FabArrayBase::getCPC() 41 5.969e-05 7.713e-05 9.863e-05 0.00% Amr::writeSmallPlotFile() 1 2.547e-05 5.709e-05 7.544e-05 0.00% Castro::enforce_speed_limit() 62 2.646e-05 2.878e-05 3.432e-05 0.00% FabArrayBase::CPC::define() 2 2.238e-05 2.448e-05 2.736e-05 0.00% Amr::initSubcycle() 1 8.838e-06 1.132e-05 1.62e-05 0.00% Gravity::swapTimeLevels() 10 9.186e-06 1.077e-05 1.264e-05 0.00% Gravity::set_mass_offset() 10 8.642e-06 9.936e-06 1.13e-05 0.00% Castro::create_source_corrector() 10 6.754e-06 9.526e-06 1.126e-05 0.00% Castro::FluxRegCrseInit 10 6.736e-06 7.765e-06 8.67e-06 0.00% Castro::retry_advance_ctu() 10 4.672e-06 5.521e-06 6.419e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 2.316e-06 2.569e-06 0.00% DistributionMapping::Distribute() 1 9.96e-07 1.176e-06 1.576e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-4-gb3241d7b368a) finalized