MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-7-g7a313e260ccf) initialized Starting run at 06:47:24 UTC on 2023-01-05. Successfully read inputs file ... Castro git describe: 22.12-11-g45d01ffe1 AMReX git describe: 23.01-7-g7a313e260 Microphysics git describe: 22.12-28-gdc4a7e21 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015958844 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362959154 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349880527 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.391608098 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333418947 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355702324 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33336037 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31602728 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316915125 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.319156101 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318207376 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01026404 seconds Ending run at 06:47:28 UTC on 2023-01-05. Run time = 3.618703947 Run time without initialization = 3.414636774 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.617 ... 3.618 ... 3.619 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2812 2.3764 2.4572 67.90% Gravity::make_radial_gravity() 21 0.3158 0.3251 0.3347 9.25% Castro::do_advance_ctu() 10 0.05657 0.1411 0.2369 6.55% Castro::initData() 1 0.04226 0.08189 0.133 3.68% Castro::estTimeStep() 21 0.0307 0.0825 0.1276 3.53% FabArray::setVal() 143 0.06677 0.07124 0.07929 2.19% amrex::Copy() 193 0.06283 0.07167 0.07926 2.19% FabArray::ParallelCopy_finish() 41 0.03379 0.04434 0.0638 1.76% Castro::reset_internal_energy(Fab) 1008 0.04826 0.04991 0.05096 1.41% Castro::normalize_species() 62 0.04084 0.04153 0.04261 1.18% FabArray::ParallelCopy_nowait() 41 0.03583 0.04072 0.04248 1.17% StateData::FillBoundary(geom) 41 0.03345 0.03641 0.0397 1.10% FillPatchIterator::Initialize 41 0.02852 0.03301 0.03538 0.98% Castro::construct_new_gravity_source() 10 0.0232 0.02589 0.02935 0.81% Gravity::interpolate_monopole_grav() 21 0.0278 0.02804 0.02829 0.78% Castro::computeTemp() 63 0.01904 0.01983 0.0201 0.56% Castro::initialize_do_advance() 10 0.01186 0.01679 0.01843 0.51% VisMF::Write(FabArray) 2 0.01296 0.01375 0.01684 0.47% FabArray::Saxpy() 20 0.01318 0.01406 0.01473 0.41% Castro::initialize_advance() 10 0.009734 0.01192 0.01444 0.40% MultiFab::contains_nan() 20 0.01116 0.01176 0.0124 0.34% FabArray::setDomainBndry() 41 0.007508 0.01019 0.01164 0.32% Amr::writePlotFile() 2 0.006685 0.01004 0.01097 0.30% Castro::construct_old_gravity_source() 10 0.007323 0.01011 0.01069 0.30% Castro::initMFs() 1 0.006601 0.007091 0.008543 0.24% StateData::define() 4 0.005561 0.00578 0.006398 0.18% main() 1 0.004985 0.005704 0.006376 0.18% Castro::construct_new_source() 50 0.005883 0.006209 0.006359 0.18% Castro::enforce_min_density() 62 0.00588 0.006058 0.00632 0.17% Castro::swap_state_time_levels() 10 0.003415 0.004506 0.004748 0.13% Gravity::get_new_grav_vector() 11 0.003159 0.003673 0.004002 0.11% Amr::coarseTimeStep() 10 0.001622 0.002235 0.002922 0.08% Gravity::get_old_grav_vector() 10 0.001786 0.002344 0.002763 0.08% Castro::buildMetrics() 1 0.001548 0.001626 0.001845 0.05% Castro::finalize_do_advance() 10 0.0006339 0.001431 0.001771 0.05% Castro::expand_state() 10 0.0006256 0.0008347 0.000903 0.02% Amr::InitAmr() 1 0.0002706 0.0003103 0.0004873 0.01% Amr::timeStep() 10 0.000201 0.0002633 0.0004336 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002735 0.000292 0.0003141 0.01% DistributionMapping::LeastUsedCPUs() 1 8.352e-06 0.0002028 0.0002365 0.01% Castro::clean_state() 62 0.0001438 0.0001597 0.0001726 0.00% StateDataPhysBCFunct::() 41 9.775e-05 0.000104 0.0001119 0.00% Castro::finalize_advance() 10 8.524e-05 9.574e-05 0.0001083 0.00% Castro::enforce_consistent_e() 1 8.729e-05 9.271e-05 9.962e-05 0.00% FabArray::ParallelCopy() 41 6.232e-05 7.657e-05 9.687e-05 0.00% Castro::Castro() 1 5.86e-05 7.268e-05 9.191e-05 0.00% FillPatchSingleLevel 41 6.126e-05 7.236e-05 8.733e-05 0.00% Amr::FinalizeInit() 1 4.237e-06 1.557e-05 8.68e-05 0.00% Amr::writeSmallPlotFile() 1 2.582e-05 6.186e-05 8.077e-05 0.00% Castro::construct_old_source() 50 5.458e-05 6.796e-05 7.935e-05 0.00% FabArrayBase::getCPC() 41 3.516e-05 5.43e-05 7.158e-05 0.00% Castro::do_old_sources() 10 4.861e-05 6.044e-05 6.734e-05 0.00% Castro::do_new_sources() 10 5.535e-05 6.156e-05 6.639e-05 0.00% Castro::apply_source_to_state() 20 3.425e-05 4.523e-05 5.79e-05 0.00% Castro::advance() 10 3.365e-05 4.181e-05 5.496e-05 0.00% Castro::subcycle_advance_ctu() 10 3.963e-05 4.524e-05 5.022e-05 0.00% Castro::construct_new_gravity() 10 3.402e-05 4.131e-05 4.927e-05 0.00% Castro::construct_old_gravity() 10 3.375e-05 3.996e-05 4.47e-05 0.00% Amr::defBaseLevel() 1 1.19e-05 1.975e-05 3.538e-05 0.00% Castro::enforce_speed_limit() 62 2.652e-05 2.899e-05 3.257e-05 0.00% FabArrayBase::CPC::define() 2 2.216e-05 2.384e-05 2.652e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.744e-05 2.169e-05 2.609e-05 0.00% Castro::check_for_nan() 20 2.04e-05 2.232e-05 2.579e-05 0.00% Castro::post_timestep() 10 1.461e-05 1.842e-05 2.386e-05 0.00% Castro::create_source_corrector() 10 7.817e-06 9.841e-06 1.199e-05 0.00% Gravity::set_mass_offset() 10 9.317e-06 1.076e-05 1.182e-05 0.00% Gravity::swapTimeLevels() 10 1.023e-05 1.085e-05 1.181e-05 0.00% Amr::initSubcycle() 1 8.787e-06 9.57e-06 1.064e-05 0.00% Castro::post_init() 1 2.878e-06 4.646e-06 1.049e-05 0.00% Castro::computeNewDt() 9 7.357e-06 8.582e-06 1.017e-05 0.00% Castro::FluxRegCrseInit 10 6.615e-06 8.114e-06 9.059e-06 0.00% Amr::initialInit() 1 8.78e-07 2.178e-06 7.593e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.73e-06 4.963e-06 6.763e-06 0.00% Castro::retry_advance_ctu() 10 4.259e-06 5.467e-06 6.301e-06 0.00% Amr::InitializeInit() 1 1.926e-06 2.55e-06 5.262e-06 0.00% Castro::post_regrid() 1 2.116e-06 3.826e-06 5.038e-06 0.00% Castro::computeInitialDt() 2 3.547e-06 4.323e-06 4.948e-06 0.00% Castro::FluxRegFineAdd() 10 1.855e-06 2.241e-06 2.946e-06 0.00% Amr::init() 1 1.9e-06 2.34e-06 2.856e-06 0.00% DistributionMapping::Distribute() 1 8.35e-07 9.569e-07 1.118e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.617 3.618 3.619 100.00% Amr::coarseTimeStep() 10 3.398 3.398 3.398 93.90% Amr::timeStep() 10 3.385 3.386 3.387 93.59% Castro::advance() 10 3.37 3.37 3.371 93.14% Castro::subcycle_advance_ctu() 10 3.286 3.291 3.295 91.04% Castro::do_advance_ctu() 10 3.286 3.291 3.295 91.04% Castro::construct_ctu_hydro_source() 10 2.281 2.376 2.457 67.90% Gravity::make_radial_gravity() 21 0.3324 0.3417 0.3493 9.65% Gravity::get_new_grav_vector() 11 0.2188 0.2209 0.2222 6.14% Castro::construct_old_gravity() 10 0.1952 0.2023 0.2088 5.77% Gravity::get_old_grav_vector() 10 0.1945 0.2016 0.2082 5.75% Amr::init() 1 0.2034 0.2036 0.2036 5.63% Castro::construct_new_gravity() 10 0.192 0.1934 0.1942 5.37% Amr::initialInit() 1 0.187 0.1872 0.1877 5.19% FillPatchIterator::Initialize 41 0.1534 0.165 0.1717 4.75% Castro::initialize_do_advance() 10 0.1494 0.1596 0.1672 4.62% Amr::InitializeInit() 1 0.06318 0.1033 0.1559 4.31% Amr::defBaseLevel() 1 0.06318 0.1032 0.1559 4.31% Castro::initData() 1 0.04642 0.08605 0.1372 3.79% FillPatchSingleLevel 41 0.1148 0.1218 0.1342 3.71% Castro::estTimeStep() 21 0.0307 0.0825 0.1276 3.53% Amr::FinalizeInit() 1 0.03179 0.08398 0.124 3.43% Castro::expand_state() 10 0.1026 0.1128 0.12 3.31% Castro::clean_state() 62 0.115 0.1168 0.1182 3.27% FabArray::ParallelCopy() 41 0.07637 0.08521 0.09981 2.76% Castro::computeInitialDt() 2 0.002249 0.05486 0.09497 2.62% Castro::initialize_advance() 10 0.07192 0.07508 0.08036 2.22% FabArray::setVal() 143 0.06677 0.07124 0.07929 2.19% amrex::Copy() 193 0.06283 0.07167 0.07926 2.19% Castro::do_new_sources() 10 0.06069 0.0658 0.07384 2.04% Castro::computeTemp() 63 0.06857 0.07003 0.0713 1.97% FabArray::ParallelCopy_finish() 41 0.03379 0.04434 0.0638 1.76% Castro::reset_internal_energy(MultiFab) 63 0.04857 0.0502 0.05127 1.42% Castro::reset_internal_energy(Fab) 1008 0.04826 0.04991 0.05096 1.41% Castro::do_old_sources() 10 0.04153 0.04525 0.04623 1.28% Castro::normalize_species() 62 0.04084 0.04153 0.04261 1.18% FabArray::ParallelCopy_nowait() 41 0.03592 0.04079 0.04255 1.18% StateDataPhysBCFunct::() 41 0.03356 0.03651 0.03981 1.10% StateData::FillBoundary(geom) 41 0.03345 0.03641 0.0397 1.10% Castro::construct_new_source() 50 0.02944 0.0321 0.03571 0.99% Castro::construct_new_gravity_source() 10 0.0232 0.02589 0.02935 0.81% Castro::post_init() 1 0.02833 0.02848 0.0287 0.79% Gravity::interpolate_monopole_grav() 21 0.0278 0.02804 0.02829 0.78% Amr::writePlotFile() 2 0.02627 0.02669 0.02694 0.74% VisMF::Write(FabArray) 2 0.01296 0.01375 0.01684 0.47% Castro::post_timestep() 10 0.01567 0.01593 0.01648 0.46% Castro::apply_source_to_state() 20 0.01322 0.01411 0.01479 0.41% FabArray::Saxpy() 20 0.01318 0.01406 0.01473 0.41% Castro::check_for_nan() 20 0.01118 0.01178 0.01242 0.34% MultiFab::contains_nan() 20 0.01116 0.01176 0.0124 0.34% Castro::Castro() 1 0.01087 0.01117 0.01204 0.33% FabArray::setDomainBndry() 41 0.007508 0.01019 0.01164 0.32% Castro::construct_old_source() 50 0.007378 0.01018 0.01076 0.30% Castro::construct_old_gravity_source() 10 0.007323 0.01011 0.01069 0.30% Castro::computeNewDt() 9 0.008566 0.008614 0.008629 0.24% Castro::initMFs() 1 0.006601 0.007091 0.008543 0.24% AmrLevel::AmrLevel(dm) 1 0.005582 0.005802 0.006416 0.18% StateData::define() 4 0.005561 0.00578 0.006398 0.18% Castro::enforce_min_density() 62 0.00588 0.006058 0.00632 0.17% Castro::swap_state_time_levels() 10 0.003415 0.004506 0.004748 0.13% Castro::finalize_advance() 10 0.002942 0.003359 0.003787 0.10% Castro::post_regrid() 1 0.001525 0.001709 0.001997 0.06% Castro::buildMetrics() 1 0.001673 0.001755 0.001997 0.06% Castro::finalize_do_advance() 10 0.0006339 0.001431 0.001771 0.05% Amr::InitAmr() 1 0.0002805 0.0003198 0.0004979 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.361e-05 0.0002087 0.000244 0.01% DistributionMapping::LeastUsedCPUs() 1 8.352e-06 0.0002028 0.0002365 0.01% Castro::enforce_consistent_e() 1 8.729e-05 9.271e-05 9.962e-05 0.00% FabArrayBase::getCPC() 41 6.06e-05 7.814e-05 9.514e-05 0.00% Amr::writeSmallPlotFile() 1 2.582e-05 6.186e-05 8.077e-05 0.00% Castro::enforce_speed_limit() 62 2.652e-05 2.899e-05 3.257e-05 0.00% FabArrayBase::CPC::define() 2 2.216e-05 2.384e-05 2.652e-05 0.00% Castro::create_source_corrector() 10 7.817e-06 9.841e-06 1.199e-05 0.00% Gravity::set_mass_offset() 10 9.317e-06 1.076e-05 1.182e-05 0.00% Gravity::swapTimeLevels() 10 1.023e-05 1.085e-05 1.181e-05 0.00% Amr::initSubcycle() 1 8.787e-06 9.57e-06 1.064e-05 0.00% Castro::FluxRegCrseInit 10 6.615e-06 8.114e-06 9.059e-06 0.00% Castro::retry_advance_ctu() 10 4.259e-06 5.467e-06 6.301e-06 0.00% Castro::FluxRegFineAdd() 10 1.855e-06 2.241e-06 2.946e-06 0.00% DistributionMapping::Distribute() 1 8.35e-07 9.569e-07 1.118e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-7-g7a313e260ccf) finalized