MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-10-g2e0b2b463306) initialized Starting run at 06:47:26 UTC on 2023-01-06. Successfully read inputs file ... Castro git describe: 23.01-12-g63195e409 AMReX git describe: 23.01-10-g2e0b2b463 Microphysics git describe: 23.01 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016384806 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36744897 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351396738 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327537564 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327013957 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.34711373 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336411808 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310405494 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311403959 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312019149 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311081421 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010742933 seconds Ending run at 06:47:30 UTC on 2023-01-06. Run time = 3.503437625 Run time without initialization = 3.320031919 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.502 ... 3.503 ... 3.504 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2686 2.3371 2.3775 67.86% Gravity::make_radial_gravity() 21 0.3158 0.3249 0.341 9.73% Castro::do_advance_ctu() 10 0.02727 0.07046 0.1405 4.01% Castro::estTimeStep() 21 0.02433 0.06922 0.1164 3.32% Castro::initData() 1 0.03818 0.07706 0.1132 3.23% FabArray::setVal() 143 0.06543 0.07331 0.08637 2.47% amrex::Copy() 193 0.06167 0.07253 0.07984 2.28% FabArray::ParallelCopy_finish() 41 0.03402 0.05057 0.07247 2.07% Castro::reset_internal_energy(Fab) 1008 0.04839 0.04924 0.05035 1.44% Castro::normalize_species() 62 0.04066 0.04176 0.04288 1.22% FabArray::ParallelCopy_nowait() 41 0.03671 0.04106 0.04238 1.21% StateData::FillBoundary(geom) 41 0.0335 0.0363 0.03883 1.11% FillPatchIterator::Initialize 41 0.02942 0.03325 0.03688 1.05% Castro::construct_new_gravity_source() 10 0.02348 0.02717 0.03231 0.92% Gravity::interpolate_monopole_grav() 21 0.02837 0.02878 0.03024 0.86% Castro::initialize_do_advance() 10 0.01256 0.01728 0.02017 0.58% Castro::computeTemp() 63 0.01881 0.01956 0.01998 0.57% VisMF::Write(FabArray) 2 0.0138 0.01456 0.01767 0.50% FabArray::Saxpy() 20 0.01233 0.01435 0.01592 0.45% Castro::initialize_advance() 10 0.008315 0.01112 0.01413 0.40% MultiFab::contains_nan() 20 0.01083 0.01168 0.01253 0.36% FabArray::setDomainBndry() 41 0.008001 0.01027 0.01163 0.33% Amr::writePlotFile() 2 0.007392 0.01038 0.01119 0.32% Castro::construct_old_gravity_source() 10 0.007652 0.01025 0.01085 0.31% Castro::initMFs() 1 0.006614 0.007069 0.008386 0.24% Castro::construct_new_source() 50 0.005721 0.006269 0.006619 0.19% main() 1 0.004901 0.005842 0.006574 0.19% StateData::define() 4 0.005612 0.005851 0.006441 0.18% Castro::enforce_min_density() 62 0.005697 0.00595 0.006249 0.18% Castro::swap_state_time_levels() 10 0.002623 0.004376 0.004639 0.13% Gravity::get_new_grav_vector() 11 0.002934 0.003558 0.00398 0.11% Amr::coarseTimeStep() 10 0.00146 0.002554 0.003505 0.10% Gravity::get_old_grav_vector() 10 0.001803 0.002398 0.002733 0.08% Castro::finalize_do_advance() 10 0.0006358 0.001602 0.001983 0.06% Castro::buildMetrics() 1 0.001579 0.001652 0.001843 0.05% Castro::expand_state() 10 0.0007736 0.0009899 0.001132 0.03% Amr::InitAmr() 1 0.0002615 0.0003272 0.0005241 0.01% Amr::timeStep() 10 0.0001643 0.0002385 0.0004576 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002772 0.0002987 0.0003567 0.01% DistributionMapping::LeastUsedCPUs() 1 7.175e-06 0.0002711 0.0003565 0.01% Castro::clean_state() 62 0.000143 0.0001512 0.0001774 0.01% StateDataPhysBCFunct::() 41 9.161e-05 0.0001109 0.0001376 0.00% Castro::finalize_advance() 10 7.984e-05 9.286e-05 0.0001058 0.00% Castro::Castro() 1 6.072e-05 7.225e-05 9.708e-05 0.00% Castro::enforce_consistent_e() 1 7.577e-05 8.375e-05 9.404e-05 0.00% FabArray::ParallelCopy() 41 6.599e-05 7.366e-05 8.717e-05 0.00% Castro::construct_old_source() 50 5.741e-05 6.71e-05 8.252e-05 0.00% Amr::FinalizeInit() 1 4.214e-06 1.409e-05 7.883e-05 0.00% FillPatchSingleLevel 41 5.994e-05 6.799e-05 7.6e-05 0.00% Amr::writeSmallPlotFile() 1 4.017e-05 6.356e-05 7.54e-05 0.00% Castro::do_new_sources() 10 4.929e-05 6.332e-05 7.246e-05 0.00% Castro::do_old_sources() 10 5.113e-05 6.028e-05 6.827e-05 0.00% Castro::apply_source_to_state() 20 3.548e-05 4.724e-05 6.721e-05 0.00% FabArrayBase::getCPC() 41 4.513e-05 5.448e-05 6.547e-05 0.00% Castro::subcycle_advance_ctu() 10 3.479e-05 4.623e-05 5.474e-05 0.00% Castro::construct_old_gravity() 10 3.364e-05 3.967e-05 5.044e-05 0.00% Castro::construct_new_gravity() 10 3.33e-05 3.86e-05 4.717e-05 0.00% Castro::advance() 10 3.64e-05 4.05e-05 4.645e-05 0.00% Castro::post_timestep() 10 1.491e-05 2.849e-05 4.584e-05 0.00% Castro::enforce_speed_limit() 62 2.54e-05 2.837e-05 3.982e-05 0.00% FabArrayBase::CPC::define() 2 2.09e-05 2.581e-05 3.25e-05 0.00% Castro::check_for_nan() 20 2.023e-05 2.24e-05 2.79e-05 0.00% Amr::initSubcycle() 1 8.6e-06 1.14e-05 2.516e-05 0.00% Amr::defBaseLevel() 1 1.687e-05 2.059e-05 2.441e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.587e-05 1.764e-05 2.147e-05 0.00% Castro::create_source_corrector() 10 8.044e-06 1e-05 1.43e-05 0.00% Gravity::set_mass_offset() 10 8.831e-06 1.089e-05 1.232e-05 0.00% Gravity::swapTimeLevels() 10 1.065e-05 1.139e-05 1.229e-05 0.00% Castro::FluxRegCrseInit 10 6.899e-06 7.831e-06 9.862e-06 0.00% Castro::computeNewDt() 9 7.349e-06 8.535e-06 9.506e-06 0.00% Castro::post_init() 1 2.762e-06 3.872e-06 7.774e-06 0.00% Castro::retry_advance_ctu() 10 4.393e-06 5.407e-06 6.693e-06 0.00% Amr::InitializeInit() 1 1.951e-06 3.042e-06 5.42e-06 0.00% Castro::computeInitialDt() 2 3.466e-06 4.32e-06 5.235e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.616e-06 4.351e-06 5.073e-06 0.00% Castro::post_regrid() 1 2.175e-06 3.134e-06 3.899e-06 0.00% Castro::FluxRegFineAdd() 10 1.97e-06 2.314e-06 2.704e-06 0.00% Amr::init() 1 1.937e-06 2.256e-06 2.619e-06 0.00% Amr::initialInit() 1 1.224e-06 1.423e-06 1.846e-06 0.00% DistributionMapping::Distribute() 1 8.48e-07 1.042e-06 1.379e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.502 3.503 3.503 100.00% Amr::coarseTimeStep() 10 3.303 3.303 3.303 94.27% Amr::timeStep() 10 3.289 3.29 3.291 93.95% Castro::advance() 10 3.274 3.274 3.275 93.48% Castro::subcycle_advance_ctu() 10 3.186 3.195 3.201 91.36% Castro::do_advance_ctu() 10 3.186 3.195 3.201 91.36% Castro::construct_ctu_hydro_source() 10 2.269 2.337 2.377 67.86% Gravity::make_radial_gravity() 21 0.3325 0.3421 0.3556 10.15% Gravity::get_new_grav_vector() 11 0.2272 0.2287 0.2295 6.55% Castro::construct_old_gravity() 10 0.1924 0.1986 0.2099 5.99% Gravity::get_old_grav_vector() 10 0.1912 0.1977 0.2093 5.97% Castro::construct_new_gravity() 10 0.1997 0.2006 0.2014 5.75% Amr::init() 1 0.1827 0.1829 0.183 5.22% FillPatchIterator::Initialize 41 0.1535 0.1718 0.1823 5.20% Castro::initialize_do_advance() 10 0.1513 0.1643 0.175 4.99% Amr::initialInit() 1 0.1658 0.166 0.1663 4.75% FillPatchSingleLevel 41 0.1137 0.1283 0.1437 4.10% Amr::InitializeInit() 1 0.05906 0.09829 0.134 3.83% Amr::defBaseLevel() 1 0.05906 0.09829 0.134 3.83% Castro::expand_state() 10 0.1027 0.117 0.1279 3.65% Castro::clean_state() 62 0.1132 0.1161 0.1178 3.36% Castro::initData() 1 0.04223 0.081 0.1174 3.35% Castro::estTimeStep() 21 0.02433 0.06922 0.1164 3.32% FabArray::ParallelCopy() 41 0.07605 0.09178 0.1094 3.12% Amr::FinalizeInit() 1 0.03195 0.06774 0.1068 3.05% FabArray::setVal() 143 0.06543 0.07331 0.08637 2.47% Castro::initialize_advance() 10 0.0699 0.07561 0.08428 2.41% Castro::do_new_sources() 10 0.06046 0.0683 0.08016 2.29% amrex::Copy() 193 0.06167 0.07253 0.07984 2.28% Castro::computeInitialDt() 2 0.002245 0.03825 0.07753 2.21% FabArray::ParallelCopy_finish() 41 0.03402 0.05057 0.07247 2.07% Castro::computeTemp() 63 0.06752 0.0691 0.07063 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04867 0.04954 0.05065 1.45% Castro::reset_internal_energy(Fab) 1008 0.04839 0.04924 0.05035 1.44% Castro::do_old_sources() 10 0.04068 0.04509 0.04627 1.32% Castro::normalize_species() 62 0.04066 0.04176 0.04288 1.22% FabArray::ParallelCopy_nowait() 41 0.03681 0.04114 0.04246 1.21% StateDataPhysBCFunct::() 41 0.03361 0.03641 0.03894 1.11% Castro::construct_new_source() 50 0.02967 0.03344 0.03893 1.11% StateData::FillBoundary(geom) 41 0.0335 0.0363 0.03883 1.11% Castro::construct_new_gravity_source() 10 0.02348 0.02717 0.03231 0.92% Gravity::interpolate_monopole_grav() 21 0.02837 0.02878 0.03024 0.86% Castro::post_init() 1 0.02884 0.02917 0.02941 0.84% Amr::writePlotFile() 2 0.02738 0.02774 0.02801 0.80% VisMF::Write(FabArray) 2 0.0138 0.01456 0.01767 0.50% Castro::post_timestep() 10 0.01541 0.01588 0.0162 0.46% Castro::apply_source_to_state() 20 0.0124 0.0144 0.01596 0.46% FabArray::Saxpy() 20 0.01233 0.01435 0.01592 0.45% Castro::check_for_nan() 20 0.01086 0.0117 0.01255 0.36% MultiFab::contains_nan() 20 0.01083 0.01168 0.01253 0.36% Castro::Castro() 1 0.01078 0.01112 0.01197 0.34% FabArray::setDomainBndry() 41 0.008001 0.01027 0.01163 0.33% Castro::construct_old_source() 50 0.007709 0.01031 0.01091 0.31% Castro::construct_old_gravity_source() 10 0.007652 0.01025 0.01085 0.31% Castro::computeNewDt() 9 0.008546 0.008557 0.008563 0.24% Castro::initMFs() 1 0.006614 0.007069 0.008386 0.24% AmrLevel::AmrLevel(dm) 1 0.00563 0.005868 0.006463 0.18% StateData::define() 4 0.005612 0.005851 0.006441 0.18% Castro::enforce_min_density() 62 0.005697 0.00595 0.006249 0.18% Castro::swap_state_time_levels() 10 0.002623 0.004376 0.004639 0.13% Castro::finalize_advance() 10 0.002933 0.003665 0.004397 0.13% Castro::buildMetrics() 1 0.001701 0.001782 0.001997 0.06% Castro::finalize_do_advance() 10 0.0006358 0.001602 0.001983 0.06% Castro::post_regrid() 1 0.00152 0.001587 0.001651 0.05% Amr::InitAmr() 1 0.0002701 0.0003386 0.0005492 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.318e-05 0.0002765 0.0003627 0.01% DistributionMapping::LeastUsedCPUs() 1 7.175e-06 0.0002711 0.0003565 0.01% Castro::enforce_consistent_e() 1 7.577e-05 8.375e-05 9.404e-05 0.00% FabArrayBase::getCPC() 41 6.783e-05 8.028e-05 9.349e-05 0.00% Amr::writeSmallPlotFile() 1 4.017e-05 6.356e-05 7.54e-05 0.00% Castro::enforce_speed_limit() 62 2.54e-05 2.837e-05 3.982e-05 0.00% FabArrayBase::CPC::define() 2 2.09e-05 2.581e-05 3.25e-05 0.00% Amr::initSubcycle() 1 8.6e-06 1.14e-05 2.516e-05 0.00% Castro::create_source_corrector() 10 8.044e-06 1e-05 1.43e-05 0.00% Gravity::set_mass_offset() 10 8.831e-06 1.089e-05 1.232e-05 0.00% Gravity::swapTimeLevels() 10 1.065e-05 1.139e-05 1.229e-05 0.00% Castro::FluxRegCrseInit 10 6.899e-06 7.831e-06 9.862e-06 0.00% Castro::retry_advance_ctu() 10 4.393e-06 5.407e-06 6.693e-06 0.00% Castro::FluxRegFineAdd() 10 1.97e-06 2.314e-06 2.704e-06 0.00% DistributionMapping::Distribute() 1 8.48e-07 1.042e-06 1.379e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-10-g2e0b2b463306) finalized