MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-11-g42b7e2706638) initialized Starting run at 06:47:25 UTC on 2023-01-09. Successfully read inputs file ... Castro git describe: 23.01-12-g63195e409 AMReX git describe: 23.01-11-g42b7e2706 Microphysics git describe: 23.01 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015281268 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363487185 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355129215 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330814692 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332470722 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357840445 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334463189 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315060263 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314990099 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316080427 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315568215 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010770894 seconds Ending run at 06:47:28 UTC on 2023-01-09. Run time = 3.585101948 Run time without initialization = 3.353981846 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.584 ... 3.585 ... 3.585 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3230 2.3637 2.4106 67.24% Gravity::make_radial_gravity() 21 0.3181 0.3326 0.3488 9.73% Castro::estTimeStep() 21 0.03452 0.088 0.1375 3.84% Castro::initData() 1 0.03904 0.0806 0.1346 3.76% Castro::do_advance_ctu() 10 0.02956 0.08036 0.1218 3.40% amrex::Copy() 193 0.06086 0.07224 0.07949 2.22% FabArray::setVal() 143 0.06435 0.06974 0.07943 2.22% FabArray::ParallelCopy_finish() 41 0.03482 0.04555 0.07267 2.03% Castro::reset_internal_energy(Fab) 1008 0.04733 0.05016 0.05192 1.45% Castro::normalize_species() 62 0.04103 0.04194 0.04295 1.20% FabArray::ParallelCopy_nowait() 41 0.0364 0.04114 0.04292 1.20% StateData::FillBoundary(geom) 41 0.03431 0.03715 0.04205 1.17% FillPatchIterator::Initialize 41 0.02837 0.03276 0.03508 0.98% Castro::construct_new_gravity_source() 10 0.02302 0.02613 0.02989 0.83% Gravity::interpolate_monopole_grav() 21 0.02842 0.02887 0.02946 0.82% Amr::InitAmr() 1 0.0002656 0.003463 0.02573 0.72% DistributionMapping::LeastUsedCPUs() 1 9.165e-06 0.02232 0.02552 0.71% Castro::computeTemp() 63 0.01824 0.01975 0.02093 0.58% Castro::initialize_do_advance() 10 0.01194 0.01698 0.01933 0.54% VisMF::Write(FabArray) 2 0.01361 0.01426 0.01676 0.47% FabArray::Saxpy() 20 0.01204 0.01376 0.01465 0.41% Castro::initialize_advance() 10 0.008146 0.01118 0.01389 0.39% MultiFab::contains_nan() 20 0.011 0.01193 0.01313 0.37% FabArray::setDomainBndry() 41 0.007937 0.0101 0.0115 0.32% Amr::writePlotFile() 2 0.006682 0.009289 0.01084 0.30% Castro::construct_old_gravity_source() 10 0.007498 0.01031 0.01081 0.30% Castro::initMFs() 1 0.006651 0.007126 0.008494 0.24% main() 1 0.005218 0.006016 0.00653 0.18% StateData::define() 4 0.005572 0.005819 0.006472 0.18% Castro::construct_new_source() 50 0.00576 0.006137 0.006466 0.18% Castro::enforce_min_density() 62 0.005646 0.005995 0.006183 0.17% Gravity::get_new_grav_vector() 11 0.003082 0.003698 0.005426 0.15% Castro::swap_state_time_levels() 10 0.003283 0.004276 0.004621 0.13% Amr::coarseTimeStep() 10 0.002331 0.002717 0.00326 0.09% Gravity::get_old_grav_vector() 10 0.001779 0.002463 0.002829 0.08% Castro::finalize_do_advance() 10 0.0006568 0.001598 0.002018 0.06% Castro::buildMetrics() 1 0.001582 0.001659 0.001877 0.05% Castro::expand_state() 10 0.0006424 0.00089 0.001115 0.03% Amr::timeStep() 10 0.0001758 0.0002501 0.0005584 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002813 0.0002991 0.0003459 0.01% Castro::clean_state() 62 0.0001331 0.000157 0.0001744 0.00% StateDataPhysBCFunct::() 41 9.363e-05 0.0001031 0.0001239 0.00% Castro::finalize_advance() 10 8.361e-05 9.298e-05 0.0001091 0.00% Castro::enforce_consistent_e() 1 8.65e-05 9.201e-05 0.0001011 0.00% Castro::construct_old_source() 50 5.18e-05 7.051e-05 9.407e-05 0.00% Castro::Castro() 1 6.042e-05 7.013e-05 8.616e-05 0.00% FabArray::ParallelCopy() 41 6.107e-05 7.219e-05 8.406e-05 0.00% Amr::FinalizeInit() 1 3.796e-06 1.452e-05 8.28e-05 0.00% Amr::writeSmallPlotFile() 1 3.975e-05 6.282e-05 7.468e-05 0.00% FabArrayBase::getCPC() 41 3.861e-05 5.524e-05 7.144e-05 0.00% Castro::do_old_sources() 10 4.693e-05 6.138e-05 7.129e-05 0.00% FillPatchSingleLevel 41 6.046e-05 6.406e-05 6.975e-05 0.00% Castro::do_new_sources() 10 5.191e-05 5.967e-05 6.965e-05 0.00% Castro::subcycle_advance_ctu() 10 3.582e-05 4.543e-05 5.876e-05 0.00% Castro::construct_old_gravity() 10 3.213e-05 4.118e-05 4.826e-05 0.00% Castro::apply_source_to_state() 20 3.635e-05 4.191e-05 4.789e-05 0.00% Castro::construct_new_gravity() 10 3.556e-05 4.114e-05 4.686e-05 0.00% Castro::advance() 10 3.564e-05 4.047e-05 4.488e-05 0.00% Amr::defBaseLevel() 1 1.819e-05 2.668e-05 3.591e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.847e-05 2.596e-05 3.34e-05 0.00% Castro::enforce_speed_limit() 62 2.591e-05 2.797e-05 3.228e-05 0.00% FabArrayBase::CPC::define() 2 2.194e-05 2.457e-05 3.057e-05 0.00% Castro::check_for_nan() 20 2.042e-05 2.25e-05 2.491e-05 0.00% Castro::post_timestep() 10 1.441e-05 1.704e-05 1.892e-05 0.00% Gravity::swapTimeLevels() 10 8.001e-06 1.063e-05 1.417e-05 0.00% Castro::post_init() 1 2.645e-06 4.717e-06 1.174e-05 0.00% Castro::create_source_corrector() 10 6.581e-06 9.304e-06 1.164e-05 0.00% Gravity::set_mass_offset() 10 8.893e-06 1.026e-05 1.139e-05 0.00% Castro::computeNewDt() 9 7.679e-06 8.816e-06 1.057e-05 0.00% Amr::initSubcycle() 1 8.994e-06 9.724e-06 1.027e-05 0.00% Castro::FluxRegCrseInit 10 7.526e-06 8.274e-06 9.292e-06 0.00% Amr::init() 1 2.057e-06 2.941e-06 7.926e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.793e-06 5.191e-06 6.578e-06 0.00% Amr::InitializeInit() 1 2.091e-06 2.925e-06 5.964e-06 0.00% Castro::retry_advance_ctu() 10 4.501e-06 5.365e-06 5.957e-06 0.00% Castro::computeInitialDt() 2 3.249e-06 4.069e-06 5.364e-06 0.00% Castro::post_regrid() 1 2.393e-06 3.346e-06 4.234e-06 0.00% Castro::FluxRegFineAdd() 10 1.919e-06 2.518e-06 3.042e-06 0.00% Amr::initialInit() 1 1.062e-06 1.267e-06 1.529e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 9.879e-07 1.101e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.584 3.585 3.585 100.00% Amr::coarseTimeStep() 10 3.337 3.337 3.337 93.07% Amr::timeStep() 10 3.323 3.324 3.324 92.72% Castro::advance() 10 3.307 3.307 3.308 92.27% Castro::subcycle_advance_ctu() 10 3.225 3.231 3.237 90.28% Castro::do_advance_ctu() 10 3.225 3.231 3.237 90.28% Castro::construct_ctu_hydro_source() 10 2.323 2.364 2.411 67.24% Gravity::make_radial_gravity() 21 0.3337 0.3495 0.3631 10.13% Amr::init() 1 0.2052 0.2275 0.2307 6.43% Gravity::get_new_grav_vector() 11 0.2268 0.2288 0.2306 6.43% Castro::construct_old_gravity() 10 0.1941 0.2041 0.2156 6.01% Amr::initialInit() 1 0.1897 0.212 0.2154 6.01% Gravity::get_old_grav_vector() 10 0.1933 0.2033 0.215 6.00% Castro::construct_new_gravity() 10 0.1988 0.2003 0.2012 5.61% Amr::InitializeInit() 1 0.0617 0.1241 0.1826 5.09% Amr::defBaseLevel() 1 0.06169 0.1241 0.1826 5.09% FillPatchIterator::Initialize 41 0.1559 0.167 0.1809 5.05% Castro::initialize_do_advance() 10 0.1547 0.1612 0.1663 4.64% FillPatchSingleLevel 41 0.1165 0.1242 0.1446 4.03% Castro::initData() 1 0.04311 0.08466 0.1386 3.87% Castro::estTimeStep() 21 0.03452 0.088 0.1375 3.84% Amr::FinalizeInit() 1 0.03232 0.08796 0.13 3.63% Castro::clean_state() 62 0.1125 0.1174 0.1203 3.36% Castro::expand_state() 10 0.1058 0.1141 0.1194 3.33% FabArray::ParallelCopy() 41 0.07787 0.08685 0.1092 3.05% Castro::computeInitialDt() 2 0.002278 0.05766 0.09972 2.78% amrex::Copy() 193 0.06086 0.07224 0.07949 2.22% FabArray::setVal() 143 0.06435 0.06974 0.07943 2.22% Castro::initialize_advance() 10 0.06629 0.07269 0.07881 2.20% Castro::do_new_sources() 10 0.05889 0.06582 0.0752 2.10% Castro::computeTemp() 63 0.06586 0.07021 0.07272 2.03% FabArray::ParallelCopy_finish() 41 0.03482 0.04555 0.07267 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04761 0.05046 0.05223 1.46% Castro::reset_internal_energy(Fab) 1008 0.04733 0.05016 0.05192 1.45% Castro::do_old_sources() 10 0.04029 0.04521 0.04674 1.30% FabArray::ParallelCopy_nowait() 41 0.03648 0.04122 0.04299 1.20% Castro::normalize_species() 62 0.04103 0.04194 0.04295 1.20% StateDataPhysBCFunct::() 41 0.03442 0.03725 0.04217 1.18% StateData::FillBoundary(geom) 41 0.03431 0.03715 0.04205 1.17% Castro::construct_new_source() 50 0.02908 0.03227 0.03626 1.01% Castro::post_init() 1 0.02932 0.02976 0.03007 0.84% Castro::construct_new_gravity_source() 10 0.02302 0.02613 0.02989 0.83% Gravity::interpolate_monopole_grav() 21 0.02842 0.02887 0.02946 0.82% Amr::writePlotFile() 2 0.02606 0.0263 0.02656 0.74% Amr::InitAmr() 1 0.000275 0.003473 0.02574 0.72% DistributionMapping::SFCProcessorMapDoIt() 1 1.67e-05 0.02233 0.02553 0.71% DistributionMapping::LeastUsedCPUs() 1 9.165e-06 0.02232 0.02552 0.71% Castro::post_timestep() 10 0.01569 0.01613 0.01699 0.47% VisMF::Write(FabArray) 2 0.01361 0.01426 0.01676 0.47% Castro::apply_source_to_state() 20 0.01208 0.0138 0.01469 0.41% FabArray::Saxpy() 20 0.01204 0.01376 0.01465 0.41% Castro::check_for_nan() 20 0.01102 0.01195 0.01315 0.37% MultiFab::contains_nan() 20 0.011 0.01193 0.01313 0.37% Castro::Castro() 1 0.01091 0.01121 0.01206 0.34% FabArray::setDomainBndry() 41 0.007937 0.0101 0.0115 0.32% Castro::construct_old_source() 50 0.00755 0.01038 0.01089 0.30% Castro::construct_old_gravity_source() 10 0.007498 0.01031 0.01081 0.30% Castro::computeNewDt() 9 0.009043 0.009052 0.009061 0.25% Castro::initMFs() 1 0.006651 0.007126 0.008494 0.24% AmrLevel::AmrLevel(dm) 1 0.005591 0.005845 0.006502 0.18% StateData::define() 4 0.005572 0.005819 0.006472 0.18% Castro::enforce_min_density() 62 0.005646 0.005995 0.006183 0.17% Castro::swap_state_time_levels() 10 0.003283 0.004276 0.004621 0.13% Castro::finalize_advance() 10 0.002955 0.003389 0.003834 0.11% Castro::buildMetrics() 1 0.001706 0.001791 0.00203 0.06% Castro::finalize_do_advance() 10 0.0006568 0.001598 0.002018 0.06% Castro::post_regrid() 1 0.00158 0.001648 0.00185 0.05% Castro::enforce_consistent_e() 1 8.65e-05 9.201e-05 0.0001011 0.00% FabArrayBase::getCPC() 41 6.801e-05 7.981e-05 9.387e-05 0.00% Amr::writeSmallPlotFile() 1 3.975e-05 6.282e-05 7.468e-05 0.00% Castro::enforce_speed_limit() 62 2.591e-05 2.797e-05 3.228e-05 0.00% FabArrayBase::CPC::define() 2 2.194e-05 2.457e-05 3.057e-05 0.00% Gravity::swapTimeLevels() 10 8.001e-06 1.063e-05 1.417e-05 0.00% Castro::create_source_corrector() 10 6.581e-06 9.304e-06 1.164e-05 0.00% Gravity::set_mass_offset() 10 8.893e-06 1.026e-05 1.139e-05 0.00% Amr::initSubcycle() 1 8.994e-06 9.724e-06 1.027e-05 0.00% Castro::FluxRegCrseInit 10 7.526e-06 8.274e-06 9.292e-06 0.00% Castro::retry_advance_ctu() 10 4.501e-06 5.365e-06 5.957e-06 0.00% Castro::FluxRegFineAdd() 10 1.919e-06 2.518e-06 3.042e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 9.879e-07 1.101e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-11-g42b7e2706638) finalized