MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-12-ga05384c0b7c4) initialized Starting run at 06:47:38 UTC on 2023-01-10. Successfully read inputs file ... Castro git describe: 23.01-12-g63195e409 AMReX git describe: 23.01-12-ga05384c0b Microphysics git describe: 23.01 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015262438 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360075282 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354623955 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332499238 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33049618 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357064721 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33184866 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310450072 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311657412 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312017471 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312482383 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.034036914 seconds Ending run at 06:47:42 UTC on 2023-01-10. Run time = 3.566314296 Run time without initialization = 3.354456705 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.566 ... 3.566 ... 3.566 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3181 2.3496 2.3873 66.94% Gravity::make_radial_gravity() 21 0.3202 0.333 0.346 9.70% Castro::estTimeStep() 21 0.03638 0.09153 0.1456 4.08% Castro::initData() 1 0.03827 0.08532 0.1413 3.96% Castro::do_advance_ctu() 10 0.03167 0.07458 0.1093 3.06% FabArray::ParallelCopy_finish() 41 0.03331 0.0467 0.08157 2.29% amrex::Copy() 193 0.05918 0.06992 0.07783 2.18% FabArray::setVal() 143 0.05889 0.06742 0.07752 2.17% Castro::reset_internal_energy(Fab) 1008 0.04834 0.04975 0.05118 1.43% FabArray::ParallelCopy_nowait() 41 0.03685 0.0407 0.04249 1.19% Castro::normalize_species() 62 0.04116 0.04175 0.0423 1.19% StateData::FillBoundary(geom) 41 0.03338 0.03635 0.04208 1.18% FillPatchIterator::Initialize 41 0.0278 0.03275 0.03517 0.99% Amr::writePlotFile() 2 0.03048 0.03332 0.03457 0.97% Castro::construct_new_gravity_source() 10 0.02278 0.02583 0.02938 0.82% Gravity::interpolate_monopole_grav() 21 0.02837 0.02863 0.02878 0.81% Castro::computeTemp() 63 0.01895 0.01983 0.02067 0.58% Castro::initialize_do_advance() 10 0.01178 0.01693 0.01909 0.54% VisMF::Write(FabArray) 2 0.01316 0.01377 0.01628 0.46% FabArray::Saxpy() 20 0.01241 0.01398 0.01471 0.41% Castro::initialize_advance() 10 0.004129 0.01008 0.01363 0.38% MultiFab::contains_nan() 20 0.01121 0.01197 0.01241 0.35% FabArray::setDomainBndry() 41 0.007751 0.01011 0.01149 0.32% Castro::construct_old_gravity_source() 10 0.007624 0.01029 0.01087 0.30% Castro::initMFs() 1 0.006708 0.007826 0.01027 0.29% StateData::define() 4 0.005549 0.006333 0.008197 0.23% main() 1 0.005628 0.006061 0.006455 0.18% Castro::construct_new_source() 50 0.005779 0.006225 0.006429 0.18% Castro::enforce_min_density() 62 0.005616 0.005923 0.006333 0.18% Gravity::get_new_grav_vector() 11 0.002981 0.003724 0.005604 0.16% Castro::swap_state_time_levels() 10 0.003301 0.004317 0.004676 0.13% Amr::coarseTimeStep() 10 0.00115 0.002481 0.003203 0.09% Gravity::get_old_grav_vector() 10 0.001802 0.00226 0.002657 0.07% Castro::buildMetrics() 1 0.001571 0.001807 0.002367 0.07% Castro::finalize_do_advance() 10 0.0006616 0.001614 0.002099 0.06% Castro::expand_state() 10 0.000645 0.0008751 0.001174 0.03% Amr::InitAmr() 1 0.0002615 0.0003418 0.0004908 0.01% Amr::timeStep() 10 0.0001749 0.000232 0.0004236 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002918 0.0003014 0.0003373 0.01% DistributionMapping::LeastUsedCPUs() 1 7.23e-06 0.0001832 0.0002637 0.01% Castro::clean_state() 62 0.0001369 0.0001513 0.0001727 0.00% Amr::writeSmallPlotFile() 1 2.502e-05 6.135e-05 0.0001317 0.00% StateDataPhysBCFunct::() 41 8.793e-05 9.907e-05 0.0001157 0.00% Castro::finalize_advance() 10 8.325e-05 9.4e-05 0.0001123 0.00% Castro::enforce_consistent_e() 1 8.214e-05 8.677e-05 9.062e-05 0.00% Castro::do_old_sources() 10 5.207e-05 6.197e-05 8.286e-05 0.00% Castro::Castro() 1 5.316e-05 7.056e-05 8.107e-05 0.00% Castro::construct_old_source() 50 5.647e-05 6.701e-05 8.073e-05 0.00% Castro::do_new_sources() 10 5.274e-05 6.358e-05 7.763e-05 0.00% FabArray::ParallelCopy() 41 6.176e-05 6.712e-05 7.452e-05 0.00% Amr::FinalizeInit() 1 3.691e-06 1.346e-05 7.413e-05 0.00% FillPatchSingleLevel 41 5.902e-05 6.309e-05 7.392e-05 0.00% FabArrayBase::getCPC() 41 3.798e-05 5.533e-05 7.08e-05 0.00% Castro::apply_source_to_state() 20 3.917e-05 4.536e-05 5.444e-05 0.00% Castro::subcycle_advance_ctu() 10 3.655e-05 4.439e-05 5.241e-05 0.00% Castro::construct_new_gravity() 10 3.109e-05 3.75e-05 4.935e-05 0.00% Castro::advance() 10 3.546e-05 4.042e-05 4.525e-05 0.00% Castro::construct_old_gravity() 10 3.344e-05 3.603e-05 3.878e-05 0.00% Castro::post_timestep() 10 1.517e-05 1.979e-05 3.356e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.696e-05 2.505e-05 3.143e-05 0.00% Castro::enforce_speed_limit() 62 2.658e-05 2.862e-05 3.054e-05 0.00% Amr::defBaseLevel() 1 1.72e-05 2.094e-05 2.788e-05 0.00% FabArrayBase::CPC::define() 2 1.969e-05 2.385e-05 2.778e-05 0.00% Castro::check_for_nan() 20 2.126e-05 2.233e-05 2.431e-05 0.00% Amr::initSubcycle() 1 8.866e-06 1.165e-05 1.626e-05 0.00% Gravity::swapTimeLevels() 10 9.379e-06 1.112e-05 1.256e-05 0.00% Gravity::set_mass_offset() 10 9.655e-06 1.097e-05 1.191e-05 0.00% Castro::FluxRegCrseInit 10 6.434e-06 8.183e-06 9.774e-06 0.00% Castro::create_source_corrector() 10 7.961e-06 8.963e-06 9.746e-06 0.00% Castro::computeNewDt() 9 8.01e-06 8.908e-06 9.729e-06 0.00% Castro::retry_advance_ctu() 10 4.582e-06 5.531e-06 6.769e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.829e-06 4.943e-06 6.582e-06 0.00% Castro::post_regrid() 1 2.349e-06 3.743e-06 6.23e-06 0.00% Castro::computeInitialDt() 2 2.958e-06 4.215e-06 5.686e-06 0.00% Amr::InitializeInit() 1 1.963e-06 2.662e-06 4.948e-06 0.00% Castro::post_init() 1 2.665e-06 3.492e-06 4.51e-06 0.00% Amr::init() 1 2.004e-06 2.335e-06 3.1e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 2.32e-06 2.735e-06 0.00% Amr::initialInit() 1 1.227e-06 1.629e-06 2.208e-06 0.00% DistributionMapping::Distribute() 1 8.39e-07 1.059e-06 1.337e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.566 3.566 3.566 100.00% Amr::coarseTimeStep() 10 3.314 3.314 3.314 92.92% Amr::timeStep() 10 3.301 3.302 3.303 92.61% Castro::advance() 10 3.285 3.285 3.286 92.15% Castro::subcycle_advance_ctu() 10 3.205 3.212 3.224 90.41% Castro::do_advance_ctu() 10 3.205 3.212 3.224 90.41% Castro::construct_ctu_hydro_source() 10 2.318 2.35 2.387 66.94% Gravity::make_radial_gravity() 21 0.3356 0.349 0.3585 10.05% Gravity::get_new_grav_vector() 11 0.2213 0.2234 0.2256 6.32% Castro::construct_old_gravity() 10 0.1986 0.2074 0.2151 6.03% Gravity::get_old_grav_vector() 10 0.1979 0.2067 0.2145 6.01% Amr::init() 1 0.2112 0.2113 0.2114 5.93% Castro::construct_new_gravity() 10 0.1975 0.1992 0.2006 5.63% Amr::initialInit() 1 0.1954 0.1957 0.196 5.50% FillPatchIterator::Initialize 41 0.1498 0.1669 0.1901 5.33% Castro::initialize_do_advance() 10 0.1489 0.1609 0.1712 4.80% Amr::InitializeInit() 1 0.05874 0.1075 0.1677 4.70% Amr::defBaseLevel() 1 0.05874 0.1075 0.1677 4.70% FillPatchSingleLevel 41 0.1117 0.1241 0.1545 4.33% Castro::estTimeStep() 21 0.03638 0.09153 0.1456 4.08% Castro::initData() 1 0.04229 0.0892 0.145 4.06% Amr::FinalizeInit() 1 0.02797 0.08826 0.1373 3.85% Castro::expand_state() 10 0.09984 0.1137 0.1245 3.49% Castro::clean_state() 62 0.1152 0.1168 0.1189 3.33% FabArray::ParallelCopy() 41 0.0753 0.08755 0.1186 3.33% Castro::computeInitialDt() 2 0.002242 0.06261 0.1114 3.12% FabArray::ParallelCopy_finish() 41 0.03331 0.0467 0.08157 2.29% amrex::Copy() 193 0.05918 0.06992 0.07783 2.18% FabArray::setVal() 143 0.05889 0.06742 0.07752 2.17% Castro::initialize_advance() 10 0.05675 0.0697 0.07676 2.15% Castro::do_new_sources() 10 0.05966 0.0661 0.07529 2.11% Castro::computeTemp() 63 0.06759 0.06988 0.07208 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04864 0.05005 0.05147 1.44% Castro::reset_internal_energy(Fab) 1008 0.04834 0.04975 0.05118 1.43% Amr::writePlotFile() 2 0.04956 0.04974 0.04996 1.40% Castro::do_old_sources() 10 0.0404 0.04516 0.0462 1.30% FabArray::ParallelCopy_nowait() 41 0.03695 0.04078 0.04257 1.19% Castro::normalize_species() 62 0.04116 0.04175 0.0423 1.19% StateDataPhysBCFunct::() 41 0.03347 0.03644 0.04217 1.18% StateData::FillBoundary(geom) 41 0.03338 0.03635 0.04208 1.18% Castro::construct_new_source() 50 0.02905 0.03205 0.03581 1.00% Castro::construct_new_gravity_source() 10 0.02278 0.02583 0.02938 0.82% Gravity::interpolate_monopole_grav() 21 0.02837 0.02863 0.02878 0.81% Castro::post_init() 1 0.02482 0.02526 0.02546 0.71% Castro::post_timestep() 10 0.01549 0.01595 0.01638 0.46% VisMF::Write(FabArray) 2 0.01316 0.01377 0.01628 0.46% Castro::apply_source_to_state() 20 0.01245 0.01403 0.01475 0.41% FabArray::Saxpy() 20 0.01241 0.01398 0.01471 0.41% Castro::Castro() 1 0.01054 0.01172 0.01447 0.41% Castro::check_for_nan() 20 0.01123 0.01199 0.01243 0.35% MultiFab::contains_nan() 20 0.01121 0.01197 0.01241 0.35% FabArray::setDomainBndry() 41 0.007751 0.01011 0.01149 0.32% Castro::construct_old_source() 50 0.00768 0.01036 0.01094 0.31% Castro::construct_old_gravity_source() 10 0.007624 0.01029 0.01087 0.30% Castro::initMFs() 1 0.006708 0.007826 0.01027 0.29% Castro::computeNewDt() 9 0.008616 0.008628 0.008644 0.24% AmrLevel::AmrLevel(dm) 1 0.005573 0.006358 0.008223 0.23% StateData::define() 4 0.005549 0.006333 0.008197 0.23% Castro::enforce_min_density() 62 0.005616 0.005923 0.006333 0.18% Castro::swap_state_time_levels() 10 0.003301 0.004317 0.004676 0.13% Castro::finalize_advance() 10 0.002968 0.003404 0.003833 0.11% Castro::buildMetrics() 1 0.001693 0.001956 0.002583 0.07% Castro::finalize_do_advance() 10 0.0006616 0.001614 0.002099 0.06% Castro::post_regrid() 1 0.001543 0.001653 0.002059 0.06% Amr::InitAmr() 1 0.0002719 0.0003535 0.000506 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.247e-05 0.0001892 0.0002712 0.01% DistributionMapping::LeastUsedCPUs() 1 7.23e-06 0.0001832 0.0002637 0.01% Amr::writeSmallPlotFile() 1 2.502e-05 6.135e-05 0.0001317 0.00% FabArrayBase::getCPC() 41 6.124e-05 7.918e-05 9.858e-05 0.00% Castro::enforce_consistent_e() 1 8.214e-05 8.677e-05 9.062e-05 0.00% Castro::enforce_speed_limit() 62 2.658e-05 2.862e-05 3.054e-05 0.00% FabArrayBase::CPC::define() 2 1.969e-05 2.385e-05 2.778e-05 0.00% Amr::initSubcycle() 1 8.866e-06 1.165e-05 1.626e-05 0.00% Gravity::swapTimeLevels() 10 9.379e-06 1.112e-05 1.256e-05 0.00% Gravity::set_mass_offset() 10 9.655e-06 1.097e-05 1.191e-05 0.00% Castro::FluxRegCrseInit 10 6.434e-06 8.183e-06 9.774e-06 0.00% Castro::create_source_corrector() 10 7.961e-06 8.963e-06 9.746e-06 0.00% Castro::retry_advance_ctu() 10 4.582e-06 5.531e-06 6.769e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 2.32e-06 2.735e-06 0.00% DistributionMapping::Distribute() 1 8.39e-07 1.059e-06 1.337e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-12-ga05384c0b7c4) finalized