MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-13-g64eb49bbc7c4) initialized Starting run at 06:47:16 UTC on 2023-01-11. Successfully read inputs file ... Castro git describe: 23.01-13-gc82f2cb99 AMReX git describe: 23.01-13-g64eb49bbc Microphysics git describe: 23.01-1-gb0e5e0cc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015338962 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.377647007 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352973215 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328284537 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328229837 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360180461 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332218166 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312373252 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.32796357 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.349813013 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.325270049 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011641202 seconds Ending run at 06:47:20 UTC on 2023-01-11. Run time = 3.645158546 Run time without initialization = 3.414243916 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.644 ... 3.645 ... 3.645 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3113 2.3675 2.4039 65.95% Gravity::make_radial_gravity() 21 0.3368 0.3442 0.3561 9.77% Castro::do_advance_ctu() 10 0.08109 0.1202 0.1759 4.83% Castro::estTimeStep() 21 0.03682 0.08286 0.1273 3.49% Castro::initData() 1 0.03828 0.07783 0.1227 3.36% FabArray::ParallelCopy_finish() 41 0.03416 0.04835 0.08112 2.23% amrex::Copy() 193 0.06106 0.07084 0.07845 2.15% FabArray::setVal() 143 0.05972 0.06801 0.07692 2.11% Castro::reset_internal_energy(Fab) 1008 0.04812 0.05 0.0524 1.44% Castro::normalize_species() 62 0.04106 0.04193 0.04351 1.19% FabArray::ParallelCopy_nowait() 41 0.03722 0.04057 0.04275 1.17% StateData::FillBoundary(geom) 41 0.03422 0.03679 0.04062 1.11% Amr::InitAmr() 1 0.0002668 0.005193 0.0392 1.08% DistributionMapping::LeastUsedCPUs() 1 1.005e-05 0.03402 0.03895 1.07% FillPatchIterator::Initialize 41 0.0281 0.03276 0.03536 0.97% Castro::construct_new_gravity_source() 10 0.02326 0.02661 0.03061 0.84% Gravity::interpolate_monopole_grav() 21 0.02832 0.02883 0.02951 0.81% Castro::computeTemp() 63 0.0178 0.01957 0.02091 0.57% Castro::initialize_do_advance() 10 0.01194 0.01688 0.01992 0.55% VisMF::Write(FabArray) 2 0.01398 0.01462 0.01753 0.48% FabArray::Saxpy() 20 0.01215 0.01364 0.01454 0.40% Castro::initialize_advance() 10 0.004225 0.01013 0.01339 0.37% MultiFab::contains_nan() 20 0.01113 0.0119 0.01252 0.34% FabArray::setDomainBndry() 41 0.008016 0.01016 0.01207 0.33% Amr::writePlotFile() 2 0.006912 0.01005 0.01093 0.30% Castro::construct_old_gravity_source() 10 0.007498 0.01017 0.01084 0.30% Castro::initMFs() 1 0.006651 0.007038 0.008586 0.24% StateData::define() 4 0.005525 0.006224 0.008206 0.23% main() 1 0.005665 0.006527 0.007011 0.19% Castro::construct_new_source() 50 0.005919 0.006253 0.006558 0.18% Castro::enforce_min_density() 62 0.00561 0.005917 0.006295 0.17% Gravity::get_new_grav_vector() 11 0.00295 0.003693 0.005628 0.15% Castro::swap_state_time_levels() 10 0.003282 0.004366 0.004987 0.14% Amr::coarseTimeStep() 10 0.001353 0.002445 0.00354 0.10% Castro::buildMetrics() 1 0.001573 0.001833 0.003177 0.09% Gravity::get_old_grav_vector() 10 0.001803 0.002362 0.002734 0.07% Castro::finalize_do_advance() 10 0.0006759 0.001575 0.001998 0.05% Castro::expand_state() 10 0.0006572 0.0009049 0.0009695 0.03% Amr::timeStep() 10 0.0001704 0.0002459 0.0004533 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002937 0.0003044 0.0003232 0.01% Castro::clean_state() 62 0.0001434 0.0001671 0.0001817 0.00% Castro::Castro() 1 5.238e-05 8.047e-05 0.0001417 0.00% StateDataPhysBCFunct::() 41 9.752e-05 0.0001123 0.0001281 0.00% Castro::finalize_advance() 10 8.418e-05 9.871e-05 0.0001127 0.00% Castro::enforce_consistent_e() 1 8.247e-05 8.679e-05 9.39e-05 0.00% FabArray::ParallelCopy() 41 6.147e-05 7.111e-05 8.18e-05 0.00% Castro::construct_old_source() 50 4.443e-05 7.166e-05 8.176e-05 0.00% Amr::writeSmallPlotFile() 1 2.499e-05 5.671e-05 7.692e-05 0.00% Castro::advance() 10 3.809e-05 4.532e-05 7.386e-05 0.00% Amr::FinalizeInit() 1 4.085e-06 1.338e-05 7.366e-05 0.00% Castro::do_old_sources() 10 4.781e-05 6.179e-05 7.332e-05 0.00% FillPatchSingleLevel 41 6.281e-05 6.728e-05 7.324e-05 0.00% FabArrayBase::getCPC() 41 4.099e-05 6.19e-05 7.278e-05 0.00% Castro::do_new_sources() 10 5.124e-05 6.093e-05 7.244e-05 0.00% Castro::apply_source_to_state() 20 4.276e-05 4.778e-05 5.921e-05 0.00% Castro::subcycle_advance_ctu() 10 4.128e-05 4.649e-05 5.112e-05 0.00% Castro::construct_new_gravity() 10 3.51e-05 4.075e-05 4.737e-05 0.00% Castro::construct_old_gravity() 10 3.451e-05 3.943e-05 4.471e-05 0.00% Castro::enforce_speed_limit() 62 2.641e-05 2.98e-05 3.372e-05 0.00% Amr::defBaseLevel() 1 1.662e-05 2.267e-05 2.995e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.33e-05 1.993e-05 2.92e-05 0.00% FabArrayBase::CPC::define() 2 2.189e-05 2.48e-05 2.874e-05 0.00% Castro::check_for_nan() 20 1.956e-05 2.258e-05 2.493e-05 0.00% Castro::post_timestep() 10 1.674e-05 1.836e-05 2.041e-05 0.00% Amr::initSubcycle() 1 8.605e-06 1.086e-05 1.57e-05 0.00% Gravity::swapTimeLevels() 10 9.92e-06 1.188e-05 1.332e-05 0.00% Gravity::set_mass_offset() 10 9.687e-06 1.088e-05 1.194e-05 0.00% Castro::create_source_corrector() 10 8.485e-06 9.507e-06 1.086e-05 0.00% Castro::computeNewDt() 9 8.11e-06 9.037e-06 1.066e-05 0.00% Castro::FluxRegCrseInit 10 6.934e-06 8.713e-06 9.845e-06 0.00% Castro::post_init() 1 2.95e-06 4.363e-06 9.773e-06 0.00% Castro::retry_advance_ctu() 10 5.273e-06 5.778e-06 7.195e-06 0.00% Castro::post_regrid() 1 1.955e-06 3.45e-06 6.428e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.39e-06 4.549e-06 6.333e-06 0.00% Amr::InitializeInit() 1 1.932e-06 2.676e-06 5.303e-06 0.00% Castro::computeInitialDt() 2 3.38e-06 3.932e-06 5.095e-06 0.00% Castro::FluxRegFineAdd() 10 1.892e-06 2.347e-06 3.141e-06 0.00% Amr::init() 1 1.925e-06 2.157e-06 2.555e-06 0.00% Amr::initialInit() 1 1.074e-06 1.441e-06 1.915e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 1.07e-06 1.279e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.644 3.645 3.645 100.00% Amr::coarseTimeStep() 10 3.396 3.396 3.396 93.16% Amr::timeStep() 10 3.382 3.383 3.384 92.84% Castro::advance() 10 3.366 3.367 3.368 92.39% Castro::subcycle_advance_ctu() 10 3.287 3.294 3.306 90.69% Castro::do_advance_ctu() 10 3.287 3.293 3.306 90.69% Castro::construct_ctu_hydro_source() 10 2.311 2.367 2.404 65.95% Gravity::make_radial_gravity() 21 0.3532 0.3605 0.3697 10.14% Gravity::get_new_grav_vector() 11 0.2319 0.2337 0.2355 6.46% Amr::init() 1 0.1915 0.2255 0.2305 6.32% Castro::construct_old_gravity() 10 0.2032 0.2101 0.2173 5.96% Gravity::get_old_grav_vector() 10 0.2025 0.2094 0.2167 5.94% Amr::initialInit() 1 0.176 0.2099 0.2149 5.90% Castro::construct_new_gravity() 10 0.208 0.2091 0.2103 5.77% FillPatchIterator::Initialize 41 0.1524 0.169 0.1902 5.22% Amr::InitializeInit() 1 0.06057 0.1332 0.1863 5.11% Amr::defBaseLevel() 1 0.06057 0.1332 0.1863 5.11% Castro::initialize_do_advance() 10 0.1511 0.1621 0.1702 4.67% FillPatchSingleLevel 41 0.1122 0.126 0.1541 4.23% Castro::estTimeStep() 21 0.03682 0.08286 0.1273 3.49% Castro::expand_state() 10 0.1021 0.1151 0.1268 3.48% Castro::initData() 1 0.04187 0.08173 0.1263 3.46% Castro::clean_state() 62 0.1127 0.117 0.1208 3.31% FabArray::ParallelCopy() 41 0.07586 0.08908 0.1185 3.25% Amr::FinalizeInit() 1 0.0282 0.07669 0.1155 3.17% Castro::computeInitialDt() 2 0.002061 0.05052 0.08915 2.45% FabArray::ParallelCopy_finish() 41 0.03416 0.04835 0.08112 2.23% amrex::Copy() 193 0.06106 0.07084 0.07845 2.15% FabArray::setVal() 143 0.05972 0.06801 0.07692 2.11% Castro::initialize_advance() 10 0.05673 0.07003 0.07622 2.09% Castro::do_new_sources() 10 0.05938 0.06684 0.07605 2.09% Castro::computeTemp() 63 0.06623 0.06988 0.07362 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04843 0.05031 0.05271 1.45% Castro::reset_internal_energy(Fab) 1008 0.04812 0.05 0.0524 1.44% Castro::do_old_sources() 10 0.04033 0.04502 0.04628 1.27% Castro::normalize_species() 62 0.04106 0.04193 0.04351 1.19% FabArray::ParallelCopy_nowait() 41 0.03732 0.04065 0.04284 1.18% StateDataPhysBCFunct::() 41 0.03434 0.0369 0.04075 1.12% StateData::FillBoundary(geom) 41 0.03422 0.03679 0.04062 1.11% Amr::InitAmr() 1 0.0002764 0.005204 0.03921 1.08% DistributionMapping::SFCProcessorMapDoIt() 1 1.431e-05 0.03402 0.03896 1.07% DistributionMapping::LeastUsedCPUs() 1 1.005e-05 0.03402 0.03895 1.07% Castro::construct_new_source() 50 0.02922 0.03287 0.03716 1.02% Castro::construct_new_gravity_source() 10 0.02326 0.02661 0.03061 0.84% Gravity::interpolate_monopole_grav() 21 0.02832 0.02883 0.02951 0.81% Amr::writePlotFile() 2 0.0272 0.02735 0.02751 0.75% Castro::post_init() 1 0.02554 0.02565 0.0258 0.71% VisMF::Write(FabArray) 2 0.01398 0.01462 0.01753 0.48% Castro::post_timestep() 10 0.01533 0.01588 0.0163 0.45% Castro::apply_source_to_state() 20 0.01219 0.01369 0.01459 0.40% FabArray::Saxpy() 20 0.01215 0.01364 0.01454 0.40% Castro::Castro() 1 0.01081 0.01118 0.01311 0.36% Castro::check_for_nan() 20 0.01115 0.01193 0.01255 0.34% MultiFab::contains_nan() 20 0.01113 0.0119 0.01252 0.34% FabArray::setDomainBndry() 41 0.008016 0.01016 0.01207 0.33% Castro::construct_old_source() 50 0.007542 0.01024 0.01091 0.30% Castro::construct_old_gravity_source() 10 0.007498 0.01017 0.01084 0.30% Castro::computeNewDt() 9 0.008983 0.009004 0.009015 0.25% Castro::initMFs() 1 0.006651 0.007038 0.008586 0.24% AmrLevel::AmrLevel(dm) 1 0.00554 0.006243 0.008235 0.23% StateData::define() 4 0.005525 0.006224 0.008206 0.23% Castro::enforce_min_density() 62 0.00561 0.005917 0.006295 0.17% Castro::swap_state_time_levels() 10 0.003282 0.004366 0.004987 0.14% Castro::finalize_advance() 10 0.002903 0.003431 0.003945 0.11% Castro::buildMetrics() 1 0.001691 0.001979 0.003438 0.09% Castro::finalize_do_advance() 10 0.0006759 0.001575 0.001998 0.05% Castro::post_regrid() 1 0.001525 0.001593 0.001677 0.05% FabArrayBase::getCPC() 41 6.288e-05 8.67e-05 0.0001015 0.00% Castro::enforce_consistent_e() 1 8.247e-05 8.679e-05 9.39e-05 0.00% Amr::writeSmallPlotFile() 1 2.499e-05 5.671e-05 7.692e-05 0.00% Castro::enforce_speed_limit() 62 2.641e-05 2.98e-05 3.372e-05 0.00% FabArrayBase::CPC::define() 2 2.189e-05 2.48e-05 2.874e-05 0.00% Amr::initSubcycle() 1 8.605e-06 1.086e-05 1.57e-05 0.00% Gravity::swapTimeLevels() 10 9.92e-06 1.188e-05 1.332e-05 0.00% Gravity::set_mass_offset() 10 9.687e-06 1.088e-05 1.194e-05 0.00% Castro::create_source_corrector() 10 8.485e-06 9.507e-06 1.086e-05 0.00% Castro::FluxRegCrseInit 10 6.934e-06 8.713e-06 9.845e-06 0.00% Castro::retry_advance_ctu() 10 5.273e-06 5.778e-06 7.195e-06 0.00% Castro::FluxRegFineAdd() 10 1.892e-06 2.347e-06 3.141e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 1.07e-06 1.279e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-13-g64eb49bbc7c4) finalized