MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-15-gf972714bd111) initialized Starting run at 06:47:45 UTC on 2023-01-12. Successfully read inputs file ... Castro git describe: 23.01-14-g78178b78e AMReX git describe: 23.01-15-gf972714bd Microphysics git describe: 23.01-3-g1e475055 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016303207 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362150809 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347268149 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331435816 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329338207 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.349984577 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339203108 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312451015 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312926695 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311756249 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31357029 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.040076581 seconds Ending run at 06:47:49 UTC on 2023-01-12. Run time = 3.559187055 Run time without initialization = 3.357337988 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.558 ... 3.559 ... 3.559 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2879 2.3420 2.3865 67.05% Gravity::make_radial_gravity() 21 0.3202 0.3311 0.3451 9.70% Castro::estTimeStep() 21 0.03372 0.08558 0.1382 3.88% Castro::initData() 1 0.03856 0.08132 0.1313 3.69% Castro::do_advance_ctu() 10 0.01626 0.06567 0.1231 3.46% FabArray::ParallelCopy_finish() 41 0.0343 0.05453 0.08537 2.40% FabArray::setVal() 143 0.06249 0.07055 0.08372 2.35% amrex::Copy() 193 0.06042 0.07124 0.07877 2.21% Castro::reset_internal_energy(Fab) 1008 0.0474 0.04928 0.05076 1.43% Castro::normalize_species() 62 0.04109 0.04219 0.04375 1.23% FabArray::ParallelCopy_nowait() 41 0.03607 0.04103 0.04295 1.21% Amr::writePlotFile() 2 0.0373 0.04049 0.04266 1.20% StateData::FillBoundary(geom) 41 0.03408 0.03675 0.04159 1.17% FillPatchIterator::Initialize 41 0.028 0.0331 0.03667 1.03% Castro::construct_new_gravity_source() 10 0.02343 0.02728 0.03325 0.93% Gravity::interpolate_monopole_grav() 21 0.02834 0.02893 0.03066 0.86% Castro::initialize_do_advance() 10 0.01176 0.01731 0.02032 0.57% Castro::computeTemp() 63 0.01831 0.01928 0.02006 0.56% VisMF::Write(FabArray) 2 0.01281 0.01381 0.01685 0.47% FabArray::Saxpy() 20 0.01241 0.01412 0.01478 0.42% Castro::initialize_advance() 10 0.004105 0.01002 0.01347 0.38% MultiFab::contains_nan() 20 0.01104 0.01196 0.01312 0.37% FabArray::setDomainBndry() 41 0.007553 0.01009 0.01143 0.32% Castro::construct_old_gravity_source() 10 0.007344 0.01022 0.01092 0.31% Castro::initMFs() 1 0.006891 0.007387 0.007909 0.22% main() 1 0.005537 0.006187 0.006521 0.18% Castro::construct_new_source() 50 0.005847 0.006185 0.006482 0.18% StateData::define() 4 0.005668 0.006004 0.006361 0.18% Castro::enforce_min_density() 62 0.005626 0.005923 0.006317 0.18% Castro::swap_state_time_levels() 10 0.003402 0.004346 0.004638 0.13% Gravity::get_new_grav_vector() 11 0.002884 0.003538 0.003984 0.11% Amr::coarseTimeStep() 10 0.001549 0.00258 0.003477 0.10% Gravity::get_old_grav_vector() 10 0.001792 0.002319 0.00272 0.08% Castro::finalize_do_advance() 10 0.0006552 0.001598 0.001971 0.06% Castro::buildMetrics() 1 0.00162 0.001734 0.001838 0.05% Castro::expand_state() 10 0.000692 0.0008442 0.00105 0.03% Amr::InitAmr() 1 0.000267 0.0003004 0.0004576 0.01% Amr::timeStep() 10 0.000177 0.0002473 0.0004505 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002898 0.000298 0.0003063 0.01% DistributionMapping::LeastUsedCPUs() 1 8.914e-06 0.0001779 0.0002135 0.01% Castro::clean_state() 62 0.0001419 0.0001485 0.0001551 0.00% StateDataPhysBCFunct::() 41 8.912e-05 0.0001037 0.0001169 0.00% Castro::enforce_consistent_e() 1 7.937e-05 8.949e-05 0.0001102 0.00% Castro::finalize_advance() 10 8.484e-05 9.333e-05 0.0001049 0.00% Castro::Castro() 1 6.54e-05 7.513e-05 9.86e-05 0.00% FabArray::ParallelCopy() 41 6.098e-05 7.082e-05 8.748e-05 0.00% Amr::FinalizeInit() 1 4.324e-06 1.429e-05 8.034e-05 0.00% Castro::construct_old_source() 50 4.914e-05 6.833e-05 8.012e-05 0.00% Amr::writeSmallPlotFile() 1 2.472e-05 6.972e-05 8.011e-05 0.00% Castro::do_new_sources() 10 4.854e-05 6.29e-05 7.668e-05 0.00% Castro::advance() 10 3.495e-05 4.334e-05 7.102e-05 0.00% Castro::do_old_sources() 10 4.729e-05 5.786e-05 6.746e-05 0.00% FillPatchSingleLevel 41 5.616e-05 6.263e-05 6.725e-05 0.00% FabArrayBase::getCPC() 41 3.7e-05 5.716e-05 6.66e-05 0.00% Castro::subcycle_advance_ctu() 10 3.923e-05 4.494e-05 5.717e-05 0.00% Castro::apply_source_to_state() 20 3.477e-05 4.159e-05 4.821e-05 0.00% Castro::construct_new_gravity() 10 3.317e-05 3.917e-05 4.594e-05 0.00% Castro::construct_old_gravity() 10 3.433e-05 3.76e-05 4.02e-05 0.00% Castro::post_timestep() 10 1.544e-05 3.119e-05 4.018e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.695e-05 3.707e-05 0.00% Castro::enforce_speed_limit() 62 2.662e-05 3.033e-05 3.589e-05 0.00% Amr::defBaseLevel() 1 1.699e-05 2.234e-05 3.19e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.643e-05 2.049e-05 2.643e-05 0.00% Castro::check_for_nan() 20 1.99e-05 2.222e-05 2.518e-05 0.00% Amr::initSubcycle() 1 9.009e-06 1.158e-05 2.407e-05 0.00% Gravity::set_mass_offset() 10 8.991e-06 1.16e-05 1.844e-05 0.00% Gravity::swapTimeLevels() 10 9.466e-06 1.082e-05 1.23e-05 0.00% Castro::FluxRegCrseInit 10 7.632e-06 8.599e-06 1.072e-05 0.00% Castro::create_source_corrector() 10 7.21e-06 8.961e-06 1.018e-05 0.00% Castro::computeNewDt() 9 7.845e-06 8.661e-06 9.067e-06 0.00% Amr::init() 1 1.853e-06 3.201e-06 8.754e-06 0.00% Amr::initialInit() 1 1.297e-06 2.488e-06 7.858e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.001e-06 5.089e-06 6.557e-06 0.00% Amr::InitializeInit() 1 1.917e-06 3.05e-06 6.188e-06 0.00% Castro::post_regrid() 1 2.191e-06 3.815e-06 6.043e-06 0.00% Castro::retry_advance_ctu() 10 4.768e-06 5.401e-06 5.92e-06 0.00% Castro::computeInitialDt() 2 3.61e-06 4.345e-06 4.925e-06 0.00% Castro::post_init() 1 2.573e-06 3.513e-06 4.694e-06 0.00% Castro::FluxRegFineAdd() 10 1.834e-06 2.188e-06 3.002e-06 0.00% DistributionMapping::Distribute() 1 8.81e-07 1.155e-06 1.958e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.558 3.559 3.559 100.00% Amr::coarseTimeStep() 10 3.311 3.311 3.311 93.02% Amr::timeStep() 10 3.297 3.298 3.299 92.70% Castro::advance() 10 3.281 3.282 3.283 92.24% Castro::subcycle_advance_ctu() 10 3.196 3.206 3.216 90.35% Castro::do_advance_ctu() 10 3.196 3.206 3.216 90.35% Castro::construct_ctu_hydro_source() 10 2.288 2.342 2.387 67.05% Gravity::make_radial_gravity() 21 0.3358 0.3475 0.3583 10.07% Gravity::get_new_grav_vector() 11 0.2285 0.2298 0.231 6.49% Castro::construct_old_gravity() 10 0.1943 0.2032 0.2125 5.97% Gravity::get_old_grav_vector() 10 0.1932 0.2023 0.2119 5.95% Castro::construct_new_gravity() 10 0.2018 0.2025 0.2034 5.71% Amr::init() 1 0.2012 0.2014 0.2014 5.66% FillPatchIterator::Initialize 41 0.1598 0.1758 0.1921 5.40% Amr::initialInit() 1 0.1843 0.1846 0.1849 5.20% Castro::initialize_do_advance() 10 0.1548 0.1675 0.1744 4.90% FillPatchSingleLevel 41 0.1192 0.1326 0.1566 4.40% Amr::InitializeInit() 1 0.05924 0.103 0.1538 4.32% Amr::defBaseLevel() 1 0.05924 0.103 0.1538 4.32% Castro::estTimeStep() 21 0.03372 0.08558 0.1382 3.88% Castro::initData() 1 0.04266 0.08536 0.1351 3.80% Castro::expand_state() 10 0.1045 0.1202 0.1277 3.59% Amr::FinalizeInit() 1 0.03076 0.08165 0.1253 3.52% FabArray::ParallelCopy() 41 0.07741 0.09571 0.1216 3.42% Castro::clean_state() 62 0.1126 0.1162 0.1188 3.34% Castro::computeInitialDt() 2 0.002173 0.053 0.09679 2.72% FabArray::ParallelCopy_finish() 41 0.0343 0.05453 0.08537 2.40% FabArray::setVal() 143 0.06249 0.07055 0.08372 2.35% Castro::initialize_advance() 10 0.06189 0.07247 0.08241 2.32% Castro::do_new_sources() 10 0.05981 0.06814 0.08095 2.27% amrex::Copy() 193 0.06042 0.07124 0.07877 2.21% Castro::computeTemp() 63 0.06601 0.06885 0.07112 2.00% Amr::writePlotFile() 2 0.05661 0.05689 0.05727 1.61% Castro::reset_internal_energy(MultiFab) 63 0.04769 0.04957 0.05107 1.43% Castro::reset_internal_energy(Fab) 1008 0.0474 0.04928 0.05076 1.43% Castro::do_old_sources() 10 0.04004 0.04473 0.04587 1.29% Castro::normalize_species() 62 0.04109 0.04219 0.04375 1.23% FabArray::ParallelCopy_nowait() 41 0.03616 0.04111 0.04302 1.21% StateDataPhysBCFunct::() 41 0.03418 0.03685 0.0417 1.17% StateData::FillBoundary(geom) 41 0.03408 0.03675 0.04159 1.17% Castro::construct_new_source() 50 0.02957 0.03347 0.03973 1.12% Castro::construct_new_gravity_source() 10 0.02343 0.02728 0.03325 0.93% Gravity::interpolate_monopole_grav() 21 0.02834 0.02893 0.03066 0.86% Castro::post_init() 1 0.02787 0.02822 0.02861 0.80% VisMF::Write(FabArray) 2 0.01281 0.01381 0.01685 0.47% Castro::post_timestep() 10 0.0154 0.01579 0.01645 0.46% Castro::apply_source_to_state() 20 0.01246 0.01416 0.01482 0.42% FabArray::Saxpy() 20 0.01241 0.01412 0.01478 0.42% Castro::check_for_nan() 20 0.01106 0.01198 0.01314 0.37% MultiFab::contains_nan() 20 0.01104 0.01196 0.01312 0.37% Castro::Castro() 1 0.01061 0.01139 0.01213 0.34% FabArray::setDomainBndry() 41 0.007553 0.01009 0.01143 0.32% Castro::construct_old_source() 50 0.007393 0.01029 0.01099 0.31% Castro::construct_old_gravity_source() 10 0.007344 0.01022 0.01092 0.31% Castro::computeNewDt() 9 0.008786 0.008801 0.008817 0.25% Castro::initMFs() 1 0.006891 0.007387 0.007909 0.22% AmrLevel::AmrLevel(dm) 1 0.005684 0.006025 0.006383 0.18% StateData::define() 4 0.005668 0.006004 0.006361 0.18% Castro::enforce_min_density() 62 0.005626 0.005923 0.006317 0.18% Castro::swap_state_time_levels() 10 0.003402 0.004346 0.004638 0.13% Castro::finalize_advance() 10 0.002977 0.003681 0.004436 0.12% Castro::buildMetrics() 1 0.001742 0.00187 0.001997 0.06% Castro::finalize_do_advance() 10 0.0006552 0.001598 0.001971 0.06% Castro::post_regrid() 1 0.001514 0.001622 0.001963 0.06% Amr::InitAmr() 1 0.0002766 0.000312 0.0004682 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.415e-05 0.0001841 0.000221 0.01% DistributionMapping::LeastUsedCPUs() 1 8.914e-06 0.0001779 0.0002135 0.01% Castro::enforce_consistent_e() 1 7.937e-05 8.949e-05 0.0001102 0.00% FabArrayBase::getCPC() 41 6.44e-05 8.411e-05 9.835e-05 0.00% Amr::writeSmallPlotFile() 1 2.472e-05 6.972e-05 8.011e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.695e-05 3.707e-05 0.00% Castro::enforce_speed_limit() 62 2.662e-05 3.033e-05 3.589e-05 0.00% Amr::initSubcycle() 1 9.009e-06 1.158e-05 2.407e-05 0.00% Gravity::set_mass_offset() 10 8.991e-06 1.16e-05 1.844e-05 0.00% Gravity::swapTimeLevels() 10 9.466e-06 1.082e-05 1.23e-05 0.00% Castro::FluxRegCrseInit 10 7.632e-06 8.599e-06 1.072e-05 0.00% Castro::create_source_corrector() 10 7.21e-06 8.961e-06 1.018e-05 0.00% Castro::retry_advance_ctu() 10 4.768e-06 5.401e-06 5.92e-06 0.00% Castro::FluxRegFineAdd() 10 1.834e-06 2.188e-06 3.002e-06 0.00% DistributionMapping::Distribute() 1 8.81e-07 1.155e-06 1.958e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-15-gf972714bd111) finalized