MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-17-gd5ddf3b22e94) initialized Starting run at 06:47:09 UTC on 2023-01-13. Successfully read inputs file ... Castro git describe: 23.01-14-g78178b78e AMReX git describe: 23.01-17-gd5ddf3b22 Microphysics git describe: 23.01-3-g1e475055 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015495726 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35693462 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.367189214 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330784754 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331595053 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352948388 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338194596 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309601642 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310121341 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314348307 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313894595 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010139311 seconds Ending run at 06:47:12 UTC on 2023-01-13. Run time = 3.522258246 Run time without initialization = 3.343446215 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.521 ... 3.522 ... 3.522 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2785 2.3464 2.3939 67.96% Gravity::make_radial_gravity() 21 0.3114 0.3218 0.3385 9.61% Castro::do_advance_ctu() 10 0.02136 0.07129 0.145 4.12% Castro::estTimeStep() 21 0.02252 0.07249 0.1179 3.35% Castro::initData() 1 0.03887 0.07737 0.1134 3.22% FabArray::setVal() 143 0.06513 0.07413 0.08592 2.44% amrex::Copy() 193 0.06142 0.0739 0.08272 2.35% FabArray::ParallelCopy_finish() 41 0.03544 0.05383 0.07473 2.12% Castro::reset_internal_energy(Fab) 1008 0.04689 0.04903 0.05012 1.42% FabArray::ParallelCopy_nowait() 41 0.0358 0.04184 0.04414 1.25% Castro::normalize_species() 62 0.04044 0.04162 0.04363 1.24% StateData::FillBoundary(geom) 41 0.0345 0.03686 0.0398 1.13% FillPatchIterator::Initialize 41 0.02836 0.03492 0.03857 1.10% Castro::construct_new_gravity_source() 10 0.02325 0.02717 0.03298 0.94% Gravity::interpolate_monopole_grav() 21 0.02819 0.02865 0.03015 0.86% Castro::initialize_do_advance() 10 0.01173 0.01779 0.02066 0.59% Castro::computeTemp() 63 0.01917 0.01972 0.01992 0.57% VisMF::Write(FabArray) 2 0.01331 0.01371 0.01609 0.46% FabArray::Saxpy() 20 0.01231 0.0141 0.01496 0.42% Castro::initialize_advance() 10 0.009807 0.01179 0.01441 0.41% MultiFab::contains_nan() 20 0.01109 0.01178 0.01274 0.36% FabArray::setDomainBndry() 41 0.007835 0.0107 0.01232 0.35% Castro::construct_old_gravity_source() 10 0.007459 0.01024 0.01088 0.31% Amr::writePlotFile() 2 0.006943 0.009351 0.009922 0.28% Castro::initMFs() 1 0.006853 0.007269 0.008396 0.24% main() 1 0.005105 0.006088 0.006884 0.20% StateData::define() 4 0.005537 0.005768 0.006367 0.18% Castro::enforce_min_density() 62 0.005518 0.006007 0.006353 0.18% Castro::construct_new_source() 50 0.005717 0.006159 0.0063 0.18% Castro::swap_state_time_levels() 10 0.003264 0.004265 0.004592 0.13% Gravity::get_new_grav_vector() 11 0.002979 0.003802 0.004219 0.12% Amr::coarseTimeStep() 10 0.001729 0.002508 0.003256 0.09% Gravity::get_old_grav_vector() 10 0.001836 0.00249 0.002862 0.08% Castro::finalize_do_advance() 10 0.000572 0.001623 0.002046 0.06% Castro::buildMetrics() 1 0.001572 0.001634 0.001829 0.05% Castro::expand_state() 10 0.0005985 0.000903 0.001112 0.03% Amr::timeStep() 10 0.0001832 0.0002602 0.0005359 0.02% Amr::InitAmr() 1 0.0002604 0.0002999 0.0004139 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002889 0.000303 0.0003166 0.01% StateDataPhysBCFunct::() 41 9.785e-05 0.0001201 0.0001883 0.01% DistributionMapping::LeastUsedCPUs() 1 7.47e-06 0.0001417 0.0001705 0.00% Castro::clean_state() 62 0.000146 0.0001578 0.0001645 0.00% Castro::Castro() 1 5.641e-05 8.311e-05 0.000119 0.00% Castro::finalize_advance() 10 8.537e-05 9.804e-05 0.0001093 0.00% Castro::construct_old_source() 50 4.73e-05 7.582e-05 0.000108 0.00% FabArray::ParallelCopy() 41 7.218e-05 8.058e-05 0.0001023 0.00% Castro::enforce_consistent_e() 1 7.436e-05 8.89e-05 9.64e-05 0.00% Castro::do_new_sources() 10 5.746e-05 6.797e-05 8.641e-05 0.00% Amr::FinalizeInit() 1 3.751e-06 1.461e-05 8.564e-05 0.00% Castro::do_old_sources() 10 5.122e-05 6.468e-05 8.19e-05 0.00% FillPatchSingleLevel 41 6.373e-05 7.081e-05 8.11e-05 0.00% Castro::subcycle_advance_ctu() 10 4.035e-05 4.943e-05 7.979e-05 0.00% FabArrayBase::getCPC() 41 4.267e-05 6.283e-05 7.907e-05 0.00% Amr::writeSmallPlotFile() 1 3.276e-05 6.614e-05 7.498e-05 0.00% Castro::construct_new_gravity() 10 3.647e-05 4.648e-05 5.652e-05 0.00% Castro::apply_source_to_state() 20 3.93e-05 4.767e-05 5.455e-05 0.00% Castro::construct_old_gravity() 10 3.988e-05 4.433e-05 5.078e-05 0.00% Castro::advance() 10 3.784e-05 4.211e-05 4.484e-05 0.00% Castro::post_timestep() 10 1.715e-05 2.86e-05 3.91e-05 0.00% FabArrayBase::CPC::define() 2 2.219e-05 2.568e-05 3.318e-05 0.00% Castro::enforce_speed_limit() 62 2.732e-05 2.957e-05 3.309e-05 0.00% Amr::defBaseLevel() 1 1.638e-05 2.273e-05 2.77e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.138e-05 1.626e-05 2.673e-05 0.00% Castro::check_for_nan() 20 2.032e-05 2.269e-05 2.463e-05 0.00% Gravity::swapTimeLevels() 10 9.155e-06 1.373e-05 2.27e-05 0.00% Castro::post_init() 1 2.563e-06 6.101e-06 1.991e-05 0.00% Castro::computeNewDt() 9 8.376e-06 1.041e-05 1.427e-05 0.00% Castro::create_source_corrector() 10 7.938e-06 1.002e-05 1.192e-05 0.00% Gravity::set_mass_offset() 10 9.203e-06 1.054e-05 1.166e-05 0.00% Amr::initSubcycle() 1 8.776e-06 9.383e-06 1.005e-05 0.00% Castro::FluxRegCrseInit 10 7.054e-06 8.231e-06 9.31e-06 0.00% Castro::retry_advance_ctu() 10 4.606e-06 5.179e-06 6.411e-06 0.00% Castro::computeInitialDt() 2 3.128e-06 3.89e-06 5.709e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.626e-06 4.434e-06 5.59e-06 0.00% Amr::InitializeInit() 1 2.021e-06 2.591e-06 4.932e-06 0.00% Castro::post_regrid() 1 2.059e-06 3.185e-06 4.55e-06 0.00% Castro::FluxRegFineAdd() 10 1.911e-06 2.156e-06 2.592e-06 0.00% Amr::init() 1 1.788e-06 2.043e-06 2.472e-06 0.00% Amr::initialInit() 1 1.159e-06 1.474e-06 1.785e-06 0.00% DistributionMapping::Distribute() 1 8.26e-07 1.091e-06 1.352e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.521 3.522 3.522 100.00% Amr::coarseTimeStep() 10 3.326 3.326 3.326 94.44% Amr::timeStep() 10 3.314 3.314 3.315 94.12% Castro::advance() 10 3.297 3.298 3.299 93.66% Castro::subcycle_advance_ctu() 10 3.21 3.218 3.225 91.56% Castro::do_advance_ctu() 10 3.21 3.217 3.225 91.56% Castro::construct_ctu_hydro_source() 10 2.278 2.346 2.394 67.96% Gravity::make_radial_gravity() 21 0.3282 0.3392 0.3526 10.01% Gravity::get_new_grav_vector() 11 0.2242 0.2257 0.229 6.50% Castro::construct_old_gravity() 10 0.1928 0.2011 0.2109 5.99% Gravity::get_old_grav_vector() 10 0.1916 0.2003 0.2102 5.97% Castro::construct_new_gravity() 10 0.1997 0.2009 0.2047 5.81% FillPatchIterator::Initialize 41 0.1614 0.1785 0.1918 5.45% Castro::initialize_do_advance() 10 0.1548 0.1681 0.1808 5.13% Amr::init() 1 0.1782 0.1784 0.1784 5.06% Amr::initialInit() 1 0.1625 0.1628 0.1631 4.63% FillPatchSingleLevel 41 0.1194 0.1329 0.1464 4.16% Amr::InitializeInit() 1 0.05963 0.09873 0.1345 3.82% Amr::defBaseLevel() 1 0.05963 0.09873 0.1345 3.82% Castro::expand_state() 10 0.1051 0.1203 0.1335 3.79% Castro::clean_state() 62 0.112 0.1159 0.1182 3.36% Castro::estTimeStep() 21 0.02252 0.07249 0.1179 3.35% Castro::initData() 1 0.04289 0.08138 0.1177 3.34% FabArray::ParallelCopy() 41 0.07974 0.09584 0.1107 3.14% Amr::FinalizeInit() 1 0.02803 0.06402 0.1035 2.94% FabArray::setVal() 143 0.06513 0.07413 0.08592 2.44% Castro::initialize_advance() 10 0.0699 0.07694 0.0849 2.41% amrex::Copy() 193 0.06142 0.0739 0.08272 2.35% Castro::do_new_sources() 10 0.06 0.06799 0.08021 2.28% Castro::computeInitialDt() 2 0.002056 0.03778 0.07691 2.18% FabArray::ParallelCopy_finish() 41 0.03544 0.05383 0.07473 2.12% Castro::computeTemp() 63 0.06637 0.06906 0.07035 2.00% Castro::reset_internal_energy(MultiFab) 63 0.0472 0.04933 0.05042 1.43% Castro::reset_internal_energy(Fab) 1008 0.04689 0.04903 0.05012 1.42% Castro::do_old_sources() 10 0.03943 0.04492 0.046 1.31% FabArray::ParallelCopy_nowait() 41 0.0359 0.04193 0.04422 1.26% Castro::normalize_species() 62 0.04044 0.04162 0.04363 1.24% StateDataPhysBCFunct::() 41 0.0346 0.03698 0.0399 1.13% StateData::FillBoundary(geom) 41 0.0345 0.03686 0.0398 1.13% Castro::construct_new_source() 50 0.02936 0.03333 0.03914 1.11% Castro::construct_new_gravity_source() 10 0.02325 0.02717 0.03298 0.94% Gravity::interpolate_monopole_grav() 21 0.02819 0.02865 0.03015 0.86% Amr::writePlotFile() 2 0.02546 0.02582 0.02609 0.74% Castro::post_init() 1 0.02545 0.0257 0.02608 0.74% Castro::post_timestep() 10 0.01527 0.01583 0.01632 0.46% VisMF::Write(FabArray) 2 0.01331 0.01371 0.01609 0.46% Castro::apply_source_to_state() 20 0.01237 0.01415 0.01501 0.43% FabArray::Saxpy() 20 0.01231 0.0141 0.01496 0.42% Castro::check_for_nan() 20 0.01112 0.01181 0.01277 0.36% MultiFab::contains_nan() 20 0.01109 0.01178 0.01274 0.36% FabArray::setDomainBndry() 41 0.007835 0.0107 0.01232 0.35% Castro::Castro() 1 0.01095 0.01139 0.01218 0.35% Castro::construct_old_source() 50 0.007507 0.01031 0.01099 0.31% Castro::construct_old_gravity_source() 10 0.007459 0.01024 0.01088 0.31% Castro::computeNewDt() 9 0.008547 0.008555 0.008562 0.24% Castro::initMFs() 1 0.006853 0.007269 0.008396 0.24% AmrLevel::AmrLevel(dm) 1 0.005553 0.005784 0.006382 0.18% StateData::define() 4 0.005537 0.005768 0.006367 0.18% Castro::enforce_min_density() 62 0.005518 0.006007 0.006353 0.18% Castro::swap_state_time_levels() 10 0.003264 0.004265 0.004592 0.13% Castro::finalize_advance() 10 0.002963 0.003701 0.004532 0.13% Castro::finalize_do_advance() 10 0.000572 0.001623 0.002046 0.06% Castro::buildMetrics() 1 0.001694 0.001768 0.001996 0.06% Castro::post_regrid() 1 0.001542 0.001614 0.001672 0.05% Amr::InitAmr() 1 0.0002697 0.0003093 0.0004227 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.198e-05 0.0001472 0.0001762 0.01% DistributionMapping::LeastUsedCPUs() 1 7.47e-06 0.0001417 0.0001705 0.00% FabArrayBase::getCPC() 41 7.275e-05 8.851e-05 0.0001027 0.00% Castro::enforce_consistent_e() 1 7.436e-05 8.89e-05 9.64e-05 0.00% Amr::writeSmallPlotFile() 1 3.276e-05 6.614e-05 7.498e-05 0.00% FabArrayBase::CPC::define() 2 2.219e-05 2.568e-05 3.318e-05 0.00% Castro::enforce_speed_limit() 62 2.732e-05 2.957e-05 3.309e-05 0.00% Gravity::swapTimeLevels() 10 9.155e-06 1.373e-05 2.27e-05 0.00% Castro::create_source_corrector() 10 7.938e-06 1.002e-05 1.192e-05 0.00% Gravity::set_mass_offset() 10 9.203e-06 1.054e-05 1.166e-05 0.00% Amr::initSubcycle() 1 8.776e-06 9.383e-06 1.005e-05 0.00% Castro::FluxRegCrseInit 10 7.054e-06 8.231e-06 9.31e-06 0.00% Castro::retry_advance_ctu() 10 4.606e-06 5.179e-06 6.411e-06 0.00% Castro::FluxRegFineAdd() 10 1.911e-06 2.156e-06 2.592e-06 0.00% DistributionMapping::Distribute() 1 8.26e-07 1.091e-06 1.352e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-17-gd5ddf3b22e94) finalized