MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-18-gd6f8b2cce0fb) initialized Starting run at 06:48:00 UTC on 2023-01-16. Successfully read inputs file ... Castro git describe: 23.01-14-g78178b78e AMReX git describe: 23.01-18-gd6f8b2cce Microphysics git describe: 23.01-3-g1e475055 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016106661 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357906097 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336563445 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.342314188 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.352855089 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357046642 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.329060463 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310739156 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311818787 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311578154 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311145658 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010533693 seconds Ending run at 06:48:04 UTC on 2023-01-16. Run time = 3.531816255 Run time without initialization = 3.339012081 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.53 ... 3.531 ... 3.532 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3047 2.3537 2.3771 67.30% Gravity::make_radial_gravity() 21 0.3229 0.3408 0.3468 9.82% Castro::estTimeStep() 21 0.03736 0.07956 0.1278 3.62% Castro::initData() 1 0.03851 0.07994 0.1236 3.50% Castro::do_advance_ctu() 10 0.03503 0.0622 0.112 3.17% FabArray::ParallelCopy_finish() 41 0.03716 0.04992 0.08197 2.32% FabArray::setVal() 143 0.06165 0.06865 0.07985 2.26% amrex::Copy() 193 0.06044 0.07139 0.07829 2.22% Castro::reset_internal_energy(Fab) 1008 0.04688 0.05028 0.05313 1.50% Castro::normalize_species() 62 0.04114 0.04231 0.04375 1.24% FabArray::ParallelCopy_nowait() 41 0.03677 0.04073 0.0429 1.21% StateData::FillBoundary(geom) 41 0.03351 0.03688 0.04248 1.20% FillPatchIterator::Initialize 41 0.02903 0.03276 0.03508 0.99% Castro::construct_new_gravity_source() 10 0.02294 0.02651 0.03211 0.91% Gravity::interpolate_monopole_grav() 21 0.02833 0.02855 0.02882 0.82% Castro::computeTemp() 63 0.01741 0.01972 0.02157 0.61% Castro::initialize_do_advance() 10 0.01212 0.01675 0.01839 0.52% VisMF::Write(FabArray) 2 0.01328 0.01421 0.01728 0.49% FabArray::Saxpy() 20 0.01252 0.01381 0.0145 0.41% Castro::initialize_advance() 10 0.004522 0.01005 0.01355 0.38% MultiFab::contains_nan() 20 0.01117 0.01171 0.01221 0.35% FabArray::setDomainBndry() 41 0.007969 0.0102 0.01175 0.33% Amr::writePlotFile() 2 0.006887 0.01009 0.01097 0.31% Castro::construct_old_gravity_source() 10 0.007469 0.01017 0.01075 0.30% Castro::initMFs() 1 0.006727 0.006989 0.008628 0.24% main() 1 0.004845 0.006033 0.00666 0.19% Castro::construct_new_source() 50 0.005904 0.006188 0.006412 0.18% StateData::define() 4 0.005472 0.005593 0.006284 0.18% Castro::enforce_min_density() 62 0.005806 0.005979 0.006213 0.18% Gravity::get_new_grav_vector() 11 0.003098 0.003651 0.005242 0.15% Castro::swap_state_time_levels() 10 0.003298 0.004375 0.005209 0.15% Amr::coarseTimeStep() 10 0.001632 0.002917 0.003839 0.11% Gravity::get_old_grav_vector() 10 0.001851 0.00238 0.002733 0.08% Castro::finalize_do_advance() 10 0.000657 0.001537 0.001817 0.05% Castro::buildMetrics() 1 0.001542 0.001596 0.001803 0.05% Castro::expand_state() 10 0.0006683 0.0007754 0.0009017 0.03% Amr::InitAmr() 1 0.0002647 0.0002955 0.0004589 0.01% Amr::timeStep() 10 0.00017 0.0002368 0.0004356 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002818 0.0003043 0.000324 0.01% DistributionMapping::LeastUsedCPUs() 1 7.511e-06 0.0001962 0.0002285 0.01% Castro::clean_state() 62 0.0001397 0.0001518 0.0001679 0.00% StateDataPhysBCFunct::() 41 8.906e-05 0.0001058 0.0001294 0.00% Castro::enforce_consistent_e() 1 7.575e-05 9.24e-05 0.0001266 0.00% Castro::Castro() 1 6.124e-05 8.013e-05 0.0001248 0.00% Castro::finalize_advance() 10 7.903e-05 9.618e-05 0.0001167 0.00% Castro::construct_old_source() 50 4.684e-05 6.802e-05 8.302e-05 0.00% Amr::writeSmallPlotFile() 1 2.547e-05 4.817e-05 7.839e-05 0.00% FabArray::ParallelCopy() 41 6.338e-05 6.986e-05 7.742e-05 0.00% Castro::do_new_sources() 10 5.377e-05 6.232e-05 7.239e-05 0.00% Castro::do_old_sources() 10 5.341e-05 6.047e-05 7.125e-05 0.00% FillPatchSingleLevel 41 5.868e-05 6.343e-05 7.03e-05 0.00% FabArrayBase::getCPC() 41 4.04e-05 5.244e-05 6.971e-05 0.00% Amr::FinalizeInit() 1 3.611e-06 1.212e-05 6.888e-05 0.00% Castro::subcycle_advance_ctu() 10 3.591e-05 4.376e-05 5.414e-05 0.00% Castro::apply_source_to_state() 20 3.324e-05 4.547e-05 5.151e-05 0.00% Castro::construct_new_gravity() 10 3.311e-05 3.714e-05 4.497e-05 0.00% Castro::advance() 10 3.293e-05 3.762e-05 4.305e-05 0.00% Castro::construct_old_gravity() 10 3.31e-05 3.824e-05 4.209e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.637e-05 3.295e-05 3.72e-05 0.00% FabArrayBase::CPC::define() 2 2.019e-05 2.588e-05 3.452e-05 0.00% Castro::enforce_speed_limit() 62 2.467e-05 2.754e-05 3.313e-05 0.00% Amr::defBaseLevel() 1 1.879e-05 2.732e-05 3.251e-05 0.00% Castro::check_for_nan() 20 2.081e-05 2.238e-05 2.47e-05 0.00% Castro::post_timestep() 10 1.419e-05 1.711e-05 1.925e-05 0.00% Gravity::set_mass_offset() 10 8.678e-06 1.117e-05 1.722e-05 0.00% Gravity::swapTimeLevels() 10 6.939e-06 1.085e-05 1.341e-05 0.00% Castro::create_source_corrector() 10 7.287e-06 9.476e-06 1.074e-05 0.00% Amr::initSubcycle() 1 8.737e-06 9.132e-06 9.906e-06 0.00% Castro::FluxRegCrseInit 10 6.909e-06 8.154e-06 9.633e-06 0.00% Castro::computeNewDt() 9 7.846e-06 8.335e-06 9.167e-06 0.00% Castro::post_init() 1 2.44e-06 3.685e-06 8.095e-06 0.00% Castro::retry_advance_ctu() 10 4.559e-06 5.355e-06 7.447e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.858e-06 4.518e-06 6.408e-06 0.00% Amr::InitializeInit() 1 2.064e-06 2.804e-06 5.74e-06 0.00% Castro::computeInitialDt() 2 3.07e-06 3.561e-06 4.554e-06 0.00% Castro::post_regrid() 1 1.9e-06 2.608e-06 3.604e-06 0.00% Amr::init() 1 1.746e-06 2.126e-06 2.93e-06 0.00% Castro::FluxRegFineAdd() 10 1.719e-06 2.172e-06 2.7e-06 0.00% Amr::initialInit() 1 1.221e-06 1.505e-06 2.074e-06 0.00% DistributionMapping::Distribute() 1 8.02e-07 9.706e-07 1.167e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.53 3.531 3.532 100.00% Amr::coarseTimeStep() 10 3.322 3.322 3.322 94.06% Amr::timeStep() 10 3.308 3.309 3.31 93.71% Castro::advance() 10 3.292 3.292 3.293 93.23% Castro::subcycle_advance_ctu() 10 3.209 3.219 3.226 91.35% Castro::do_advance_ctu() 10 3.209 3.219 3.226 91.35% Castro::construct_ctu_hydro_source() 10 2.305 2.354 2.377 67.30% Gravity::make_radial_gravity() 21 0.3388 0.3575 0.3611 10.22% Gravity::get_new_grav_vector() 11 0.2217 0.2242 0.2267 6.42% Castro::construct_old_gravity() 10 0.2018 0.2164 0.2199 6.23% Gravity::get_old_grav_vector() 10 0.2012 0.2157 0.2192 6.21% Castro::construct_new_gravity() 10 0.1955 0.1977 0.1996 5.65% FillPatchIterator::Initialize 41 0.1557 0.1708 0.1936 5.48% Amr::init() 1 0.1921 0.1923 0.1924 5.45% Amr::initialInit() 1 0.1758 0.176 0.1765 5.00% Castro::initialize_do_advance() 10 0.1546 0.1647 0.1718 4.86% FillPatchSingleLevel 41 0.1178 0.1278 0.1566 4.44% Amr::InitializeInit() 1 0.0596 0.1014 0.1457 4.12% Amr::defBaseLevel() 1 0.05959 0.1014 0.1457 4.12% Castro::initData() 1 0.04252 0.0842 0.1286 3.64% Castro::expand_state() 10 0.1065 0.1174 0.1283 3.63% Castro::estTimeStep() 21 0.03736 0.07956 0.1278 3.62% Castro::clean_state() 62 0.1116 0.1178 0.1233 3.49% FabArray::ParallelCopy() 41 0.08023 0.0908 0.1189 3.37% Amr::FinalizeInit() 1 0.03033 0.0746 0.1164 3.30% Castro::computeInitialDt() 2 0.002378 0.04659 0.08847 2.51% FabArray::ParallelCopy_finish() 41 0.03716 0.04992 0.08197 2.32% Castro::initialize_advance() 10 0.06154 0.06994 0.07997 2.26% FabArray::setVal() 143 0.06165 0.06865 0.07985 2.26% amrex::Copy() 193 0.06044 0.07139 0.07829 2.22% Castro::do_new_sources() 10 0.05972 0.0668 0.07806 2.21% Castro::computeTemp() 63 0.06457 0.07031 0.07503 2.12% Castro::reset_internal_energy(MultiFab) 63 0.04716 0.05059 0.05346 1.51% Castro::reset_internal_energy(Fab) 1008 0.04688 0.05028 0.05313 1.50% Castro::do_old_sources() 10 0.04044 0.0451 0.04621 1.31% Castro::normalize_species() 62 0.04114 0.04231 0.04375 1.24% FabArray::ParallelCopy_nowait() 41 0.03684 0.04081 0.04299 1.22% StateDataPhysBCFunct::() 41 0.03362 0.03698 0.04259 1.21% StateData::FillBoundary(geom) 41 0.03351 0.03688 0.04248 1.20% Castro::construct_new_source() 50 0.02912 0.03269 0.0384 1.09% Castro::construct_new_gravity_source() 10 0.02294 0.02651 0.03211 0.91% Gravity::interpolate_monopole_grav() 21 0.02833 0.02855 0.02882 0.82% Castro::post_init() 1 0.02727 0.02754 0.02784 0.79% Amr::writePlotFile() 2 0.02648 0.02693 0.02725 0.77% VisMF::Write(FabArray) 2 0.01328 0.01421 0.01728 0.49% Castro::post_timestep() 10 0.01553 0.01608 0.01713 0.48% Castro::apply_source_to_state() 20 0.01255 0.01386 0.01454 0.41% FabArray::Saxpy() 20 0.01252 0.01381 0.0145 0.41% Castro::check_for_nan() 20 0.0112 0.01174 0.01224 0.35% MultiFab::contains_nan() 20 0.01117 0.01171 0.01221 0.35% Castro::Castro() 1 0.01124 0.01139 0.01221 0.35% FabArray::setDomainBndry() 41 0.007969 0.0102 0.01175 0.33% Castro::construct_old_source() 50 0.007516 0.01024 0.01081 0.31% Castro::construct_old_gravity_source() 10 0.007469 0.01017 0.01075 0.30% Castro::computeNewDt() 9 0.009182 0.00919 0.009197 0.26% Castro::initMFs() 1 0.006727 0.006989 0.008628 0.24% AmrLevel::AmrLevel(dm) 1 0.005506 0.005626 0.006318 0.18% StateData::define() 4 0.005472 0.005593 0.006284 0.18% Castro::enforce_min_density() 62 0.005806 0.005979 0.006213 0.18% Castro::swap_state_time_levels() 10 0.003298 0.004375 0.005209 0.15% Castro::finalize_advance() 10 0.002979 0.003466 0.003983 0.11% Castro::buildMetrics() 1 0.001665 0.001732 0.00196 0.06% Castro::post_regrid() 1 0.001561 0.001655 0.001833 0.05% Castro::finalize_do_advance() 10 0.000657 0.001537 0.001817 0.05% Amr::InitAmr() 1 0.0002744 0.0003046 0.0004678 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.237e-05 0.0002017 0.0002361 0.01% DistributionMapping::LeastUsedCPUs() 1 7.511e-06 0.0001962 0.0002285 0.01% Castro::enforce_consistent_e() 1 7.575e-05 9.24e-05 0.0001266 0.00% FabArrayBase::getCPC() 41 6.377e-05 7.832e-05 9.903e-05 0.00% Amr::writeSmallPlotFile() 1 2.547e-05 4.817e-05 7.839e-05 0.00% FabArrayBase::CPC::define() 2 2.019e-05 2.588e-05 3.452e-05 0.00% Castro::enforce_speed_limit() 62 2.467e-05 2.754e-05 3.313e-05 0.00% Gravity::set_mass_offset() 10 8.678e-06 1.117e-05 1.722e-05 0.00% Gravity::swapTimeLevels() 10 6.939e-06 1.085e-05 1.341e-05 0.00% Castro::create_source_corrector() 10 7.287e-06 9.476e-06 1.074e-05 0.00% Amr::initSubcycle() 1 8.737e-06 9.132e-06 9.906e-06 0.00% Castro::FluxRegCrseInit 10 6.909e-06 8.154e-06 9.633e-06 0.00% Castro::retry_advance_ctu() 10 4.559e-06 5.355e-06 7.447e-06 0.00% Castro::FluxRegFineAdd() 10 1.719e-06 2.172e-06 2.7e-06 0.00% DistributionMapping::Distribute() 1 8.02e-07 9.706e-07 1.167e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-18-gd6f8b2cce0fb) finalized