MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-18-gd6f8b2cce0fb) initialized Starting run at 06:47:43 UTC on 2023-01-17. Successfully read inputs file ... Castro git describe: 23.01-14-g78178b78e AMReX git describe: 23.01-18-gd6f8b2cce Microphysics git describe: 23.01-4-gd64aa25b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016254329 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365949194 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361412106 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339383836 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340758459 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359648973 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336448595 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315260196 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315684302 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316488597 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316446138 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.042979907 seconds Ending run at 06:47:46 UTC on 2023-01-17. Run time = 3.604864446 Run time without initialization = 3.417802442 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.603 ... 3.604 ... 3.605 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2790 2.3651 2.4188 67.10% Gravity::make_radial_gravity() 21 0.3259 0.331 0.3385 9.39% Castro::do_advance_ctu() 10 0.0398 0.09646 0.1861 5.16% Castro::initData() 1 0.03831 0.07899 0.1173 3.25% Castro::estTimeStep() 21 0.02349 0.06864 0.1157 3.21% amrex::Copy() 193 0.07104 0.07518 0.08254 2.29% FabArray::setVal() 143 0.06556 0.0733 0.08175 2.27% FabArray::ParallelCopy_finish() 41 0.03855 0.0493 0.06053 1.68% Castro::reset_internal_energy(Fab) 1008 0.04868 0.04998 0.05168 1.43% FabArray::ParallelCopy_nowait() 41 0.03879 0.04195 0.04404 1.22% Amr::writePlotFile() 2 0.03965 0.0423 0.04326 1.20% Castro::normalize_species() 62 0.04093 0.0418 0.04277 1.19% StateData::FillBoundary(geom) 41 0.03505 0.03726 0.04128 1.15% FillPatchIterator::Initialize 41 0.02861 0.03422 0.0368 1.02% Castro::construct_new_gravity_source() 10 0.02407 0.02682 0.03108 0.86% Gravity::interpolate_monopole_grav() 21 0.02813 0.02867 0.0297 0.82% Castro::computeTemp() 63 0.0182 0.01978 0.02098 0.58% Castro::initialize_do_advance() 10 0.01433 0.01776 0.01992 0.55% VisMF::Write(FabArray) 2 0.013 0.01386 0.01685 0.47% FabArray::Saxpy() 20 0.01405 0.01451 0.01486 0.41% Castro::initialize_advance() 10 0.009697 0.01178 0.0143 0.40% MultiFab::contains_nan() 20 0.0114 0.01193 0.01255 0.35% FabArray::setDomainBndry() 41 0.008181 0.01074 0.01196 0.33% Castro::construct_old_gravity_source() 10 0.009604 0.0106 0.0111 0.31% Castro::initMFs() 1 0.006572 0.007028 0.008315 0.23% main() 1 0.004946 0.006144 0.006702 0.19% Castro::construct_new_source() 50 0.006226 0.006402 0.006529 0.18% StateData::define() 4 0.005501 0.005716 0.006329 0.18% Castro::enforce_min_density() 62 0.0059 0.006044 0.006293 0.17% Gravity::get_new_grav_vector() 11 0.00318 0.004188 0.005495 0.15% Castro::swap_state_time_levels() 10 0.003484 0.004668 0.005367 0.15% Amr::coarseTimeStep() 10 0.002149 0.002781 0.003135 0.09% Gravity::get_old_grav_vector() 10 0.002019 0.002539 0.002885 0.08% Castro::finalize_do_advance() 10 0.001682 0.002076 0.00243 0.07% Castro::buildMetrics() 1 0.001544 0.001622 0.001842 0.05% Castro::expand_state() 10 0.0007146 0.0008462 0.0009509 0.03% Amr::timeStep() 10 0.0001792 0.0002413 0.0004642 0.01% Amr::InitAmr() 1 0.0002576 0.0002943 0.000397 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002952 0.0003087 0.0003321 0.01% Castro::clean_state() 62 0.0001426 0.0001689 0.0001882 0.01% DistributionMapping::LeastUsedCPUs() 1 6.117e-06 0.0001119 0.0001432 0.00% StateDataPhysBCFunct::() 41 9.853e-05 0.000111 0.0001262 0.00% Castro::finalize_advance() 10 8.577e-05 9.865e-05 0.000108 0.00% Castro::enforce_consistent_e() 1 8.344e-05 9.13e-05 0.0001046 0.00% Castro::Castro() 1 5.88e-05 7.26e-05 0.0001029 0.00% Amr::FinalizeInit() 1 3.964e-06 1.473e-05 8.63e-05 0.00% Amr::writeSmallPlotFile() 1 2.607e-05 6.648e-05 8.175e-05 0.00% Castro::do_old_sources() 10 5.334e-05 6.428e-05 8.105e-05 0.00% Castro::construct_old_source() 50 4.742e-05 6.935e-05 8.059e-05 0.00% FillPatchSingleLevel 41 6.088e-05 6.777e-05 7.898e-05 0.00% FabArray::ParallelCopy() 41 6.965e-05 7.378e-05 7.882e-05 0.00% Castro::do_new_sources() 10 5.124e-05 6.642e-05 7.861e-05 0.00% Castro::subcycle_advance_ctu() 10 4.293e-05 5.03e-05 7.015e-05 0.00% FabArrayBase::getCPC() 41 4.231e-05 6.048e-05 6.976e-05 0.00% Castro::apply_source_to_state() 20 4.334e-05 4.942e-05 5.554e-05 0.00% Castro::advance() 10 3.533e-05 4.159e-05 4.894e-05 0.00% Castro::construct_old_gravity() 10 3.821e-05 4.275e-05 4.565e-05 0.00% Castro::construct_new_gravity() 10 3.543e-05 3.883e-05 4.37e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.886e-05 3.074e-05 3.832e-05 0.00% Castro::enforce_speed_limit() 62 2.637e-05 2.796e-05 3.116e-05 0.00% FabArrayBase::CPC::define() 2 2.236e-05 2.617e-05 3.02e-05 0.00% Castro::check_for_nan() 20 2.103e-05 2.355e-05 2.791e-05 0.00% Amr::defBaseLevel() 1 1.556e-05 1.989e-05 2.629e-05 0.00% Castro::post_timestep() 10 1.61e-05 1.77e-05 2.002e-05 0.00% Amr::initSubcycle() 1 8.618e-06 1.102e-05 1.965e-05 0.00% Gravity::swapTimeLevels() 10 7.962e-06 1.093e-05 1.375e-05 0.00% Gravity::set_mass_offset() 10 9.085e-06 1.012e-05 1.126e-05 0.00% Castro::create_source_corrector() 10 8.971e-06 9.967e-06 1.115e-05 0.00% Castro::FluxRegCrseInit 10 6.177e-06 8.049e-06 9.217e-06 0.00% Castro::computeNewDt() 9 8.324e-06 8.68e-06 8.954e-06 0.00% Amr::InitializeInit() 1 2.133e-06 3.45e-06 8.242e-06 0.00% Castro::post_init() 1 2.731e-06 3.894e-06 7.089e-06 0.00% Castro::retry_advance_ctu() 10 4.43e-06 5.319e-06 6.194e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.694e-06 4.594e-06 5.87e-06 0.00% Castro::computeInitialDt() 2 3.421e-06 3.904e-06 4.917e-06 0.00% Castro::post_regrid() 1 2.057e-06 3.116e-06 4.231e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.296e-06 3.12e-06 0.00% Amr::init() 1 1.657e-06 2.043e-06 2.454e-06 0.00% DistributionMapping::Distribute() 1 8.36e-07 1.174e-06 1.636e-06 0.00% Amr::initialInit() 1 1.028e-06 1.322e-06 1.578e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.603 3.604 3.605 100.00% Amr::coarseTimeStep() 10 3.368 3.368 3.368 93.43% Amr::timeStep() 10 3.355 3.356 3.356 93.10% Castro::advance() 10 3.339 3.339 3.34 92.66% Castro::subcycle_advance_ctu() 10 3.255 3.261 3.267 90.63% Castro::do_advance_ctu() 10 3.255 3.261 3.267 90.63% Castro::construct_ctu_hydro_source() 10 2.279 2.365 2.419 67.10% Gravity::make_radial_gravity() 21 0.3422 0.3482 0.3548 9.84% Gravity::get_new_grav_vector() 11 0.2246 0.2271 0.229 6.35% Castro::construct_old_gravity() 10 0.1994 0.2058 0.2112 5.86% Gravity::get_old_grav_vector() 10 0.1987 0.2051 0.2106 5.84% Castro::construct_new_gravity() 10 0.1973 0.1995 0.2008 5.57% Amr::init() 1 0.1865 0.1866 0.1866 5.18% FillPatchIterator::Initialize 41 0.1655 0.1738 0.1852 5.14% Castro::initialize_do_advance() 10 0.1597 0.1686 0.1801 4.99% Amr::initialInit() 1 0.1701 0.1706 0.1709 4.74% Amr::InitializeInit() 1 0.05897 0.1 0.1393 3.86% Amr::defBaseLevel() 1 0.05897 0.1 0.1393 3.86% FillPatchSingleLevel 41 0.1199 0.1288 0.1369 3.80% Castro::expand_state() 10 0.1112 0.1204 0.1309 3.63% Castro::initData() 1 0.04245 0.08307 0.1209 3.35% Castro::clean_state() 62 0.1141 0.1171 0.1196 3.32% Castro::estTimeStep() 21 0.02349 0.06864 0.1157 3.21% Amr::FinalizeInit() 1 0.03125 0.07057 0.1117 3.10% FabArray::ParallelCopy() 41 0.08189 0.09141 0.0995 2.76% amrex::Copy() 193 0.07104 0.07518 0.08254 2.29% Castro::computeInitialDt() 2 0.002185 0.04146 0.08252 2.29% FabArray::setVal() 143 0.06556 0.0733 0.08175 2.27% Castro::initialize_advance() 10 0.06853 0.07469 0.08096 2.25% Castro::do_new_sources() 10 0.0622 0.06894 0.07654 2.12% Castro::computeTemp() 63 0.0673 0.07007 0.07216 2.00% FabArray::ParallelCopy_finish() 41 0.03855 0.0493 0.06053 1.68% Amr::writePlotFile() 2 0.05876 0.05907 0.05946 1.65% Castro::reset_internal_energy(MultiFab) 63 0.04898 0.05029 0.05199 1.44% Castro::reset_internal_energy(Fab) 1008 0.04868 0.04998 0.05168 1.43% Castro::do_old_sources() 10 0.04496 0.0464 0.04723 1.31% FabArray::ParallelCopy_nowait() 41 0.03889 0.04204 0.04412 1.22% Castro::normalize_species() 62 0.04093 0.0418 0.04277 1.19% StateDataPhysBCFunct::() 41 0.03517 0.03737 0.04139 1.15% StateData::FillBoundary(geom) 41 0.03505 0.03726 0.04128 1.15% Castro::construct_new_source() 50 0.03029 0.03322 0.03748 1.04% Castro::construct_new_gravity_source() 10 0.02407 0.02682 0.03108 0.86% Gravity::interpolate_monopole_grav() 21 0.02813 0.02867 0.0297 0.82% Castro::post_init() 1 0.02816 0.02864 0.02887 0.80% VisMF::Write(FabArray) 2 0.013 0.01386 0.01685 0.47% Castro::post_timestep() 10 0.01544 0.01591 0.01635 0.45% Castro::apply_source_to_state() 20 0.0141 0.01456 0.01491 0.41% FabArray::Saxpy() 20 0.01405 0.01451 0.01486 0.41% Castro::check_for_nan() 20 0.01142 0.01196 0.01257 0.35% MultiFab::contains_nan() 20 0.0114 0.01193 0.01255 0.35% FabArray::setDomainBndry() 41 0.008181 0.01074 0.01196 0.33% Castro::Castro() 1 0.01072 0.01104 0.01187 0.33% Castro::construct_old_source() 50 0.009651 0.01067 0.01117 0.31% Castro::construct_old_gravity_source() 10 0.009604 0.0106 0.0111 0.31% Castro::computeNewDt() 9 0.008693 0.008704 0.008713 0.24% Castro::initMFs() 1 0.006572 0.007028 0.008315 0.23% AmrLevel::AmrLevel(dm) 1 0.005533 0.005747 0.006364 0.18% StateData::define() 4 0.005501 0.005716 0.006329 0.18% Castro::enforce_min_density() 62 0.0059 0.006044 0.006293 0.17% Castro::swap_state_time_levels() 10 0.003484 0.004668 0.005367 0.15% Castro::finalize_advance() 10 0.002917 0.003405 0.004406 0.12% Castro::finalize_do_advance() 10 0.001682 0.002076 0.00243 0.07% Castro::buildMetrics() 1 0.001658 0.00175 0.001981 0.05% Castro::post_regrid() 1 0.001589 0.001669 0.001947 0.05% Amr::InitAmr() 1 0.0002672 0.0003053 0.0004057 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.104e-05 0.0001176 0.0001501 0.00% DistributionMapping::LeastUsedCPUs() 1 6.117e-06 0.0001119 0.0001432 0.00% Castro::enforce_consistent_e() 1 8.344e-05 9.13e-05 0.0001046 0.00% FabArrayBase::getCPC() 41 6.583e-05 8.665e-05 9.671e-05 0.00% Amr::writeSmallPlotFile() 1 2.607e-05 6.648e-05 8.175e-05 0.00% Castro::enforce_speed_limit() 62 2.637e-05 2.796e-05 3.116e-05 0.00% FabArrayBase::CPC::define() 2 2.236e-05 2.617e-05 3.02e-05 0.00% Amr::initSubcycle() 1 8.618e-06 1.102e-05 1.965e-05 0.00% Gravity::swapTimeLevels() 10 7.962e-06 1.093e-05 1.375e-05 0.00% Gravity::set_mass_offset() 10 9.085e-06 1.012e-05 1.126e-05 0.00% Castro::create_source_corrector() 10 8.971e-06 9.967e-06 1.115e-05 0.00% Castro::FluxRegCrseInit 10 6.177e-06 8.049e-06 9.217e-06 0.00% Castro::retry_advance_ctu() 10 4.43e-06 5.319e-06 6.194e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.296e-06 3.12e-06 0.00% DistributionMapping::Distribute() 1 8.36e-07 1.174e-06 1.636e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-18-gd6f8b2cce0fb) finalized