MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-19-ga5063a5d705b) initialized Starting run at 06:47:14 UTC on 2023-01-19. Successfully read inputs file ... Castro git describe: 23.01-15-gd760f9747 AMReX git describe: 23.01-19-ga5063a5d7 Microphysics git describe: 23.01-4-gd64aa25b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015732675 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364365937 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.346721257 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339040794 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.354449008 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35743281 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33215771 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314019242 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31218119 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31231629 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311969037 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010467771 seconds Ending run at 06:47:17 UTC on 2023-01-19. Run time = 3.566082793 Run time without initialization = 3.362406111 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.565 ... 3.566 ... 3.566 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2718 2.3563 2.4103 67.59% Gravity::make_radial_gravity() 21 0.3134 0.3211 0.3303 9.26% Castro::do_advance_ctu() 10 0.04193 0.09871 0.1869 5.24% Castro::initData() 1 0.03859 0.07684 0.1133 3.18% Castro::estTimeStep() 21 0.02152 0.06466 0.1084 3.04% FabArray::setVal() 143 0.06718 0.07383 0.08224 2.31% amrex::Copy() 193 0.06888 0.07526 0.08111 2.27% FabArray::ParallelCopy_finish() 41 0.03361 0.04429 0.05707 1.60% Castro::reset_internal_energy(Fab) 1008 0.04841 0.04975 0.05123 1.44% FabArray::ParallelCopy_nowait() 41 0.04029 0.04221 0.0438 1.23% Castro::normalize_species() 62 0.0408 0.04137 0.04178 1.17% StateData::FillBoundary(geom) 41 0.0346 0.03667 0.03984 1.12% FillPatchIterator::Initialize 41 0.02848 0.03426 0.03692 1.04% Castro::construct_new_gravity_source() 10 0.02335 0.02633 0.02968 0.83% Gravity::interpolate_monopole_grav() 21 0.0283 0.02858 0.02872 0.81% Amr::InitAmr() 1 0.0002637 0.00331 0.02455 0.69% DistributionMapping::LeastUsedCPUs() 1 9.73e-06 0.02127 0.02431 0.68% Castro::computeTemp() 63 0.01931 0.01997 0.02036 0.57% Castro::initialize_do_advance() 10 0.01217 0.01758 0.02023 0.57% VisMF::Write(FabArray) 2 0.01351 0.01402 0.01666 0.47% FabArray::Saxpy() 20 0.01355 0.0143 0.01493 0.42% Castro::initialize_advance() 10 0.009788 0.01174 0.01395 0.39% MultiFab::contains_nan() 20 0.01126 0.01184 0.01228 0.34% FabArray::setDomainBndry() 41 0.008914 0.01095 0.01217 0.34% Castro::construct_old_gravity_source() 10 0.008524 0.01055 0.01113 0.31% Amr::writePlotFile() 2 0.006801 0.009246 0.009784 0.27% Castro::initMFs() 1 0.006797 0.006829 0.006862 0.19% Castro::construct_new_source() 50 0.006216 0.006376 0.006538 0.18% main() 1 0.00518 0.006138 0.006506 0.18% Castro::enforce_min_density() 62 0.005715 0.005958 0.006147 0.17% Gravity::get_new_grav_vector() 11 0.003043 0.004195 0.005778 0.16% StateData::define() 4 0.005681 0.005705 0.005748 0.16% Castro::swap_state_time_levels() 10 0.003538 0.004678 0.004862 0.14% Gravity::get_old_grav_vector() 10 0.001777 0.002566 0.002876 0.08% Castro::finalize_do_advance() 10 0.001781 0.002081 0.002432 0.07% Amr::coarseTimeStep() 10 0.001335 0.00175 0.002146 0.06% Castro::buildMetrics() 1 0.001575 0.001585 0.001602 0.04% Castro::expand_state() 10 0.0007924 0.000942 0.001097 0.03% Amr::timeStep() 10 0.0001982 0.0002619 0.0005147 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002888 0.0003015 0.0003186 0.01% Castro::clean_state() 62 0.0001466 0.0001583 0.0001702 0.00% StateDataPhysBCFunct::() 41 0.0001011 0.0001118 0.000122 0.00% Castro::finalize_advance() 10 8.652e-05 9.625e-05 0.0001123 0.00% Castro::Castro() 1 6.488e-05 7.732e-05 9.801e-05 0.00% Castro::enforce_consistent_e() 1 7.573e-05 8.944e-05 9.597e-05 0.00% FabArray::ParallelCopy() 41 6.587e-05 7.815e-05 8.865e-05 0.00% Castro::construct_old_source() 50 4.878e-05 7.291e-05 8.629e-05 0.00% Amr::FinalizeInit() 1 4.155e-06 1.469e-05 8.283e-05 0.00% Castro::do_old_sources() 10 5.732e-05 6.61e-05 7.98e-05 0.00% Castro::do_new_sources() 10 5.977e-05 6.84e-05 7.902e-05 0.00% Castro::subcycle_advance_ctu() 10 4.048e-05 4.858e-05 7.798e-05 0.00% FillPatchSingleLevel 41 5.825e-05 6.943e-05 7.748e-05 0.00% Amr::writeSmallPlotFile() 1 3.401e-05 6.258e-05 7.542e-05 0.00% FabArrayBase::getCPC() 41 4.324e-05 5.588e-05 7.354e-05 0.00% Castro::advance() 10 3.375e-05 4.494e-05 7.025e-05 0.00% Castro::apply_source_to_state() 20 4.133e-05 4.967e-05 5.777e-05 0.00% Castro::construct_new_gravity() 10 3.559e-05 4.146e-05 4.946e-05 0.00% Castro::construct_old_gravity() 10 3.848e-05 4.245e-05 4.625e-05 0.00% Castro::enforce_speed_limit() 62 2.608e-05 2.942e-05 3.5e-05 0.00% Castro::check_for_nan() 20 2.113e-05 2.363e-05 3.035e-05 0.00% FabArrayBase::CPC::define() 2 2.046e-05 2.414e-05 2.834e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.706e-05 2.13e-05 2.676e-05 0.00% Amr::defBaseLevel() 1 1.561e-05 1.889e-05 2.509e-05 0.00% Castro::post_timestep() 10 1.579e-05 1.89e-05 2.252e-05 0.00% Gravity::swapTimeLevels() 10 1.013e-05 1.114e-05 1.286e-05 0.00% Gravity::set_mass_offset() 10 9.162e-06 1.05e-05 1.231e-05 0.00% Castro::create_source_corrector() 10 8.733e-06 1.01e-05 1.129e-05 0.00% Castro::FluxRegCrseInit 10 7.146e-06 8.359e-06 1.083e-05 0.00% Castro::computeNewDt() 9 7.649e-06 8.809e-06 1.032e-05 0.00% Amr::initSubcycle() 1 8.591e-06 9.079e-06 9.695e-06 0.00% Castro::retry_advance_ctu() 10 4.401e-06 5.321e-06 6.827e-06 0.00% Castro::post_init() 1 2.586e-06 3.94e-06 6.028e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.523e-06 4.067e-06 5.99e-06 0.00% Amr::InitializeInit() 1 1.878e-06 2.924e-06 5.343e-06 0.00% Castro::post_regrid() 1 1.866e-06 3.262e-06 5.062e-06 0.00% Castro::computeInitialDt() 2 3.291e-06 4.111e-06 4.779e-06 0.00% Castro::FluxRegFineAdd() 10 1.868e-06 2.207e-06 2.58e-06 0.00% Amr::init() 1 1.705e-06 2.135e-06 2.382e-06 0.00% Amr::initialInit() 1 1.135e-06 1.489e-06 2.159e-06 0.00% DistributionMapping::Distribute() 1 7.93e-07 9.16e-07 1.099e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.565 3.566 3.566 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 93.81% Amr::timeStep() 10 3.334 3.334 3.335 93.50% Castro::advance() 10 3.317 3.318 3.319 93.06% Castro::subcycle_advance_ctu() 10 3.235 3.24 3.246 91.02% Castro::do_advance_ctu() 10 3.235 3.24 3.246 91.02% Castro::construct_ctu_hydro_source() 10 2.272 2.356 2.41 67.59% Gravity::make_radial_gravity() 21 0.3309 0.3384 0.3453 9.68% Gravity::get_new_grav_vector() 11 0.2205 0.2225 0.2243 6.29% Castro::construct_old_gravity() 10 0.196 0.2006 0.2059 5.77% Gravity::get_old_grav_vector() 10 0.1951 0.1999 0.2052 5.75% Amr::init() 1 0.179 0.2002 0.2033 5.70% Castro::construct_new_gravity() 10 0.1965 0.1978 0.1991 5.58% Amr::initialInit() 1 0.163 0.1845 0.1877 5.26% FillPatchIterator::Initialize 41 0.1596 0.1687 0.1771 4.97% Castro::initialize_do_advance() 10 0.153 0.1632 0.1715 4.81% Amr::InitializeInit() 1 0.0615 0.1198 0.1592 4.46% Amr::defBaseLevel() 1 0.0615 0.1198 0.1592 4.46% FillPatchSingleLevel 41 0.1125 0.1235 0.1325 3.72% Castro::expand_state() 10 0.1078 0.1155 0.1238 3.47% Castro::clean_state() 62 0.1153 0.1166 0.1175 3.30% Castro::initData() 1 0.04275 0.08109 0.1175 3.29% Castro::estTimeStep() 21 0.02152 0.06466 0.1084 3.04% Amr::FinalizeInit() 1 0.02846 0.06473 0.103 2.89% FabArray::ParallelCopy() 41 0.07568 0.08666 0.09753 2.73% FabArray::setVal() 143 0.06718 0.07383 0.08224 2.31% amrex::Copy() 193 0.06888 0.07526 0.08111 2.27% Castro::initialize_advance() 10 0.06869 0.0742 0.07961 2.23% Castro::computeInitialDt() 2 0.002049 0.03844 0.07668 2.15% Castro::do_new_sources() 10 0.06154 0.06816 0.07523 2.11% Castro::computeTemp() 63 0.06847 0.07003 0.07151 2.01% FabArray::ParallelCopy_finish() 41 0.03361 0.04429 0.05707 1.60% Castro::reset_internal_energy(MultiFab) 63 0.0487 0.05005 0.05154 1.45% Castro::reset_internal_energy(Fab) 1008 0.04841 0.04975 0.05123 1.44% Castro::do_old_sources() 10 0.04385 0.04612 0.04677 1.31% FabArray::ParallelCopy_nowait() 41 0.04039 0.04229 0.04388 1.23% Castro::normalize_species() 62 0.0408 0.04137 0.04178 1.17% StateDataPhysBCFunct::() 41 0.03471 0.03678 0.03995 1.12% StateData::FillBoundary(geom) 41 0.0346 0.03667 0.03984 1.12% Castro::construct_new_source() 50 0.02971 0.03271 0.0361 1.01% Castro::construct_new_gravity_source() 10 0.02335 0.02633 0.02968 0.83% Gravity::interpolate_monopole_grav() 21 0.0283 0.02858 0.02872 0.81% Amr::writePlotFile() 2 0.02612 0.02627 0.02653 0.74% Castro::post_init() 1 0.02552 0.02573 0.02588 0.73% Amr::InitAmr() 1 0.0002734 0.003319 0.02456 0.69% DistributionMapping::SFCProcessorMapDoIt() 1 1.413e-05 0.02127 0.02432 0.68% DistributionMapping::LeastUsedCPUs() 1 9.73e-06 0.02127 0.02431 0.68% VisMF::Write(FabArray) 2 0.01351 0.01402 0.01666 0.47% Castro::post_timestep() 10 0.0155 0.0159 0.0162 0.45% Castro::apply_source_to_state() 20 0.01359 0.01435 0.01498 0.42% FabArray::Saxpy() 20 0.01355 0.0143 0.01493 0.42% Castro::check_for_nan() 20 0.01129 0.01187 0.0123 0.35% MultiFab::contains_nan() 20 0.01126 0.01184 0.01228 0.34% FabArray::setDomainBndry() 41 0.008914 0.01095 0.01217 0.34% Castro::Castro() 1 0.01162 0.01165 0.01171 0.33% Castro::construct_old_source() 50 0.008572 0.01063 0.01121 0.31% Castro::construct_old_gravity_source() 10 0.008524 0.01055 0.01113 0.31% Castro::computeNewDt() 9 0.008529 0.008537 0.008546 0.24% Castro::initMFs() 1 0.006797 0.006829 0.006862 0.19% Castro::enforce_min_density() 62 0.005715 0.005958 0.006147 0.17% AmrLevel::AmrLevel(dm) 1 0.005702 0.005726 0.005774 0.16% StateData::define() 4 0.005681 0.005705 0.005748 0.16% Castro::swap_state_time_levels() 10 0.003538 0.004678 0.004862 0.14% Castro::finalize_advance() 10 0.00294 0.003345 0.003802 0.11% Castro::finalize_do_advance() 10 0.001781 0.002081 0.002432 0.07% Castro::buildMetrics() 1 0.001709 0.001725 0.001737 0.05% Castro::post_regrid() 1 0.001573 0.00163 0.001698 0.05% FabArrayBase::getCPC() 41 6.736e-05 8.003e-05 0.0001001 0.00% Castro::enforce_consistent_e() 1 7.573e-05 8.944e-05 9.597e-05 0.00% Amr::writeSmallPlotFile() 1 3.401e-05 6.258e-05 7.542e-05 0.00% Castro::enforce_speed_limit() 62 2.608e-05 2.942e-05 3.5e-05 0.00% FabArrayBase::CPC::define() 2 2.046e-05 2.414e-05 2.834e-05 0.00% Gravity::swapTimeLevels() 10 1.013e-05 1.114e-05 1.286e-05 0.00% Gravity::set_mass_offset() 10 9.162e-06 1.05e-05 1.231e-05 0.00% Castro::create_source_corrector() 10 8.733e-06 1.01e-05 1.129e-05 0.00% Castro::FluxRegCrseInit 10 7.146e-06 8.359e-06 1.083e-05 0.00% Amr::initSubcycle() 1 8.591e-06 9.079e-06 9.695e-06 0.00% Castro::retry_advance_ctu() 10 4.401e-06 5.321e-06 6.827e-06 0.00% Castro::FluxRegFineAdd() 10 1.868e-06 2.207e-06 2.58e-06 0.00% DistributionMapping::Distribute() 1 7.93e-07 9.16e-07 1.099e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-19-ga5063a5d705b) finalized