MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-21-gb487434b948f) initialized Starting run at 06:47:37 UTC on 2023-01-20. Successfully read inputs file ... Castro git describe: 23.01-17-g111d2fb95 AMReX git describe: 23.01-21-gb487434b9 Microphysics git describe: 23.01-4-gd64aa25b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015126876 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366094029 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345199328 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.3475473 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333298504 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365384667 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335259769 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310442905 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31350706 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311292764 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312093043 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010268756 seconds Ending run at 06:47:41 UTC on 2023-01-20. Run time = 3.543971332 Run time without initialization = 3.357790545 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.544 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2383 2.3387 2.3891 67.41% Gravity::make_radial_gravity() 21 0.3192 0.3358 0.3505 9.89% Castro::do_advance_ctu() 10 0.03127 0.08575 0.192 5.42% Castro::estTimeStep() 21 0.02925 0.07154 0.119 3.36% Castro::initData() 1 0.03838 0.07857 0.1141 3.22% FabArray::setVal() 143 0.06084 0.0703 0.08337 2.35% FabArray::ParallelCopy_finish() 41 0.03649 0.05339 0.08191 2.31% amrex::Copy() 193 0.05953 0.07158 0.08056 2.27% Castro::reset_internal_energy(Fab) 1008 0.04729 0.05029 0.05359 1.51% FabArray::ParallelCopy_nowait() 41 0.03683 0.04208 0.04462 1.26% Castro::normalize_species() 62 0.04087 0.04237 0.04429 1.25% StateData::FillBoundary(geom) 41 0.03338 0.03791 0.04155 1.17% FillPatchIterator::Initialize 41 0.02928 0.03448 0.03679 1.04% Castro::construct_new_gravity_source() 10 0.02324 0.02711 0.03354 0.95% Gravity::interpolate_monopole_grav() 21 0.0279 0.02829 0.02857 0.81% Castro::computeTemp() 63 0.01853 0.0198 0.02127 0.60% Castro::initialize_do_advance() 10 0.01217 0.01771 0.02065 0.58% VisMF::Write(FabArray) 2 0.01313 0.01384 0.017 0.48% FabArray::Saxpy() 20 0.01196 0.01355 0.01447 0.41% Castro::initialize_advance() 10 0.00452 0.01001 0.01376 0.39% FabArray::setDomainBndry() 41 0.007882 0.01075 0.01196 0.34% MultiFab::contains_nan() 20 0.01006 0.01079 0.01174 0.33% Castro::construct_old_gravity_source() 10 0.007579 0.01032 0.01098 0.31% Amr::writePlotFile() 2 0.006694 0.008891 0.009583 0.27% Castro::initMFs() 1 0.006956 0.007389 0.008591 0.24% Amr::InitAmr() 1 0.0002706 0.001225 0.007447 0.21% DistributionMapping::LeastUsedCPUs() 1 9.71e-06 0.006232 0.007191 0.20% Castro::enforce_min_density() 62 0.005654 0.006142 0.006797 0.19% main() 1 0.005168 0.006115 0.006621 0.19% StateData::define() 4 0.005749 0.006013 0.006503 0.18% Castro::construct_new_source() 50 0.005921 0.0061 0.006422 0.18% Gravity::get_new_grav_vector() 11 0.002736 0.004009 0.005535 0.16% Amr::coarseTimeStep() 10 0.002048 0.003598 0.005049 0.14% Castro::swap_state_time_levels() 10 0.002192 0.004404 0.004739 0.13% Gravity::get_old_grav_vector() 10 0.001768 0.002415 0.002775 0.08% Castro::finalize_do_advance() 10 0.0006504 0.001566 0.001977 0.06% Castro::buildMetrics() 1 0.001628 0.001707 0.001866 0.05% Castro::expand_state() 10 0.0006561 0.0008552 0.00107 0.03% Amr::timeStep() 10 0.0001755 0.0002369 0.0004258 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002853 0.0003058 0.0003454 0.01% Castro::clean_state() 62 0.0001412 0.0001845 0.0002167 0.01% StateDataPhysBCFunct::() 41 8.986e-05 0.0001048 0.0001218 0.00% Castro::finalize_advance() 10 8.192e-05 9.468e-05 0.000116 0.00% Castro::Castro() 1 5.989e-05 7.749e-05 0.0001099 0.00% Castro::enforce_consistent_e() 1 7.955e-05 8.657e-05 9.375e-05 0.00% FabArray::ParallelCopy() 41 7.035e-05 7.828e-05 8.385e-05 0.00% Castro::construct_old_source() 50 4.685e-05 6.7e-05 8.237e-05 0.00% Amr::FinalizeInit() 1 3.542e-06 1.413e-05 8.153e-05 0.00% FillPatchSingleLevel 41 6.14e-05 6.748e-05 7.966e-05 0.00% Amr::writeSmallPlotFile() 1 2.542e-05 5.781e-05 7.752e-05 0.00% FabArrayBase::getCPC() 41 4.982e-05 5.672e-05 7.132e-05 0.00% Castro::subcycle_advance_ctu() 10 3.935e-05 4.686e-05 6.713e-05 0.00% Castro::do_old_sources() 10 4.692e-05 5.84e-05 6.696e-05 0.00% Castro::advance() 10 3.467e-05 4.636e-05 6.651e-05 0.00% Castro::do_new_sources() 10 5.549e-05 6.055e-05 6.547e-05 0.00% Castro::apply_source_to_state() 20 3.632e-05 4.371e-05 5.256e-05 0.00% Castro::construct_old_gravity() 10 3.527e-05 4.019e-05 4.963e-05 0.00% Castro::construct_new_gravity() 10 3.682e-05 4.068e-05 4.455e-05 0.00% Castro::enforce_speed_limit() 62 2.613e-05 3.066e-05 4.191e-05 0.00% Amr::defBaseLevel() 1 1.731e-05 2.088e-05 3.696e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.374e-05 2.828e-05 3.622e-05 0.00% Castro::post_timestep() 10 1.701e-05 2.537e-05 3.388e-05 0.00% FabArrayBase::CPC::define() 2 2.102e-05 2.34e-05 2.71e-05 0.00% Castro::check_for_nan() 20 1.985e-05 2.17e-05 2.314e-05 0.00% Amr::initSubcycle() 1 8.797e-06 1.114e-05 1.573e-05 0.00% Gravity::set_mass_offset() 10 8.834e-06 1.073e-05 1.301e-05 0.00% Gravity::swapTimeLevels() 10 8.181e-06 1.082e-05 1.226e-05 0.00% Castro::create_source_corrector() 10 8.583e-06 9.517e-06 1.071e-05 0.00% Castro::post_init() 1 2.713e-06 4.241e-06 1.05e-05 0.00% Castro::FluxRegCrseInit 10 7.107e-06 8.812e-06 1.048e-05 0.00% Castro::computeNewDt() 9 8.278e-06 8.861e-06 9.389e-06 0.00% Castro::retry_advance_ctu() 10 5.302e-06 5.934e-06 6.773e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.002e-06 4.824e-06 6.376e-06 0.00% Castro::computeInitialDt() 2 3.685e-06 4.457e-06 5.765e-06 0.00% Amr::InitializeInit() 1 2.077e-06 2.643e-06 5.071e-06 0.00% Castro::post_regrid() 1 2.112e-06 3.285e-06 4.648e-06 0.00% Castro::FluxRegFineAdd() 10 1.961e-06 2.262e-06 2.447e-06 0.00% Amr::init() 1 1.693e-06 2.119e-06 2.44e-06 0.00% Amr::initialInit() 1 1.084e-06 1.319e-06 1.728e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.08e-06 1.3e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.544 3.544 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 94.27% Amr::timeStep() 10 3.326 3.327 3.329 93.93% Castro::advance() 10 3.31 3.311 3.312 93.45% Castro::subcycle_advance_ctu() 10 3.226 3.235 3.241 91.46% Castro::do_advance_ctu() 10 3.226 3.235 3.241 91.46% Castro::construct_ctu_hydro_source() 10 2.238 2.339 2.389 67.41% Gravity::make_radial_gravity() 21 0.335 0.3523 0.3639 10.27% Gravity::get_new_grav_vector() 11 0.22 0.2242 0.2267 6.40% Castro::construct_old_gravity() 10 0.1988 0.2115 0.2187 6.17% Gravity::get_old_grav_vector() 10 0.1981 0.2108 0.2181 6.15% Castro::construct_new_gravity() 10 0.1967 0.2001 0.2021 5.70% FillPatchIterator::Initialize 41 0.1606 0.1789 0.1919 5.41% Amr::init() 1 0.1785 0.1848 0.1857 5.24% Castro::initialize_do_advance() 10 0.1545 0.1715 0.1808 5.10% Amr::initialInit() 1 0.1633 0.1697 0.1709 4.82% FillPatchSingleLevel 41 0.116 0.1337 0.1546 4.36% Amr::InitializeInit() 1 0.06177 0.1064 0.1427 4.03% Amr::defBaseLevel() 1 0.06176 0.1064 0.1427 4.03% Castro::expand_state() 10 0.1058 0.1232 0.1336 3.77% Castro::clean_state() 62 0.1134 0.1182 0.125 3.53% Castro::estTimeStep() 21 0.02925 0.07154 0.119 3.36% FabArray::ParallelCopy() 41 0.07871 0.09562 0.1189 3.35% Castro::initData() 1 0.04249 0.08259 0.1181 3.33% Amr::FinalizeInit() 1 0.02744 0.06328 0.1039 2.93% FabArray::setVal() 143 0.06084 0.0703 0.08337 2.35% FabArray::ParallelCopy_finish() 41 0.03649 0.05339 0.08191 2.31% Castro::initialize_advance() 10 0.065 0.07204 0.08109 2.29% amrex::Copy() 193 0.05953 0.07158 0.08056 2.27% Castro::do_new_sources() 10 0.05914 0.06705 0.07986 2.25% Castro::computeInitialDt() 2 0.001997 0.03756 0.0782 2.21% Castro::computeTemp() 63 0.06703 0.0704 0.07519 2.12% Castro::reset_internal_energy(MultiFab) 63 0.04757 0.0506 0.05391 1.52% Castro::reset_internal_energy(Fab) 1008 0.04729 0.05029 0.05359 1.51% Castro::do_old_sources() 10 0.03975 0.04522 0.04701 1.33% FabArray::ParallelCopy_nowait() 41 0.03691 0.04216 0.04469 1.26% Castro::normalize_species() 62 0.04087 0.04237 0.04429 1.25% StateDataPhysBCFunct::() 41 0.03348 0.03802 0.04165 1.18% StateData::FillBoundary(geom) 41 0.03338 0.03791 0.04155 1.17% Castro::construct_new_source() 50 0.02925 0.03321 0.03996 1.13% Castro::construct_new_gravity_source() 10 0.02324 0.02711 0.03354 0.95% Gravity::interpolate_monopole_grav() 21 0.0279 0.02829 0.02857 0.81% Amr::writePlotFile() 2 0.02515 0.02542 0.0257 0.73% Castro::post_init() 1 0.0246 0.02513 0.02544 0.72% Castro::post_timestep() 10 0.01524 0.01603 0.01725 0.49% VisMF::Write(FabArray) 2 0.01313 0.01384 0.017 0.48% Castro::apply_source_to_state() 20 0.012 0.0136 0.01451 0.41% FabArray::Saxpy() 20 0.01196 0.01355 0.01447 0.41% Castro::Castro() 1 0.01109 0.01153 0.01241 0.35% FabArray::setDomainBndry() 41 0.007882 0.01075 0.01196 0.34% Castro::check_for_nan() 20 0.01009 0.01081 0.01177 0.33% MultiFab::contains_nan() 20 0.01006 0.01079 0.01174 0.33% Castro::construct_old_source() 50 0.007626 0.01039 0.01106 0.31% Castro::construct_old_gravity_source() 10 0.007579 0.01032 0.01098 0.31% Castro::computeNewDt() 9 0.009123 0.009131 0.009142 0.26% Castro::initMFs() 1 0.006956 0.007389 0.008591 0.24% Amr::InitAmr() 1 0.0002802 0.001236 0.007455 0.21% DistributionMapping::SFCProcessorMapDoIt() 1 1.465e-05 0.006238 0.007198 0.20% DistributionMapping::LeastUsedCPUs() 1 9.71e-06 0.006232 0.007191 0.20% Castro::enforce_min_density() 62 0.005654 0.006142 0.006797 0.19% AmrLevel::AmrLevel(dm) 1 0.005781 0.006041 0.006533 0.18% StateData::define() 4 0.005749 0.006013 0.006503 0.18% Castro::swap_state_time_levels() 10 0.002192 0.004404 0.004739 0.13% Castro::finalize_advance() 10 0.002869 0.003575 0.0045 0.13% Castro::buildMetrics() 1 0.001762 0.00184 0.00202 0.06% Castro::finalize_do_advance() 10 0.0006504 0.001566 0.001977 0.06% Castro::post_regrid() 1 0.001532 0.001619 0.001872 0.05% FabArrayBase::getCPC() 41 7.296e-05 8.012e-05 9.817e-05 0.00% Castro::enforce_consistent_e() 1 7.955e-05 8.657e-05 9.375e-05 0.00% Amr::writeSmallPlotFile() 1 2.542e-05 5.781e-05 7.752e-05 0.00% Castro::enforce_speed_limit() 62 2.613e-05 3.066e-05 4.191e-05 0.00% FabArrayBase::CPC::define() 2 2.102e-05 2.34e-05 2.71e-05 0.00% Amr::initSubcycle() 1 8.797e-06 1.114e-05 1.573e-05 0.00% Gravity::set_mass_offset() 10 8.834e-06 1.073e-05 1.301e-05 0.00% Gravity::swapTimeLevels() 10 8.181e-06 1.082e-05 1.226e-05 0.00% Castro::create_source_corrector() 10 8.583e-06 9.517e-06 1.071e-05 0.00% Castro::FluxRegCrseInit 10 7.107e-06 8.812e-06 1.048e-05 0.00% Castro::retry_advance_ctu() 10 5.302e-06 5.934e-06 6.773e-06 0.00% Castro::FluxRegFineAdd() 10 1.961e-06 2.262e-06 2.447e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.08e-06 1.3e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-21-gb487434b948f) finalized