MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-21-gb487434b948f) initialized Starting run at 06:47:15 UTC on 2023-01-23. Successfully read inputs file ... Castro git describe: 23.01-18-gbb2758482 AMReX git describe: 23.01-21-gb487434b9 Microphysics git describe: 23.01-4-gd64aa25b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016307445 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358134468 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.371065335 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.326537623 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327289477 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353909323 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330152883 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31014681 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311204026 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310327812 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313073992 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010389703 seconds Ending run at 06:47:19 UTC on 2023-01-23. Run time = 3.568919968 Run time without initialization = 3.329266114 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.568 ... 3.569 ... 3.569 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2872 2.3555 2.3958 67.13% Gravity::make_radial_gravity() 21 0.3207 0.3294 0.3457 9.69% Castro::initData() 1 0.06576 0.0945 0.1545 4.33% Castro::do_advance_ctu() 10 0.04154 0.08351 0.1538 4.31% Castro::estTimeStep() 21 0.03154 0.09331 0.1329 3.72% amrex::Copy() 193 0.06024 0.07101 0.07927 2.22% FabArray::setVal() 143 0.05919 0.06791 0.07834 2.19% FabArray::ParallelCopy_finish() 41 0.03415 0.04588 0.07398 2.07% Castro::reset_internal_energy(Fab) 1008 0.04904 0.0501 0.05076 1.42% FabArray::ParallelCopy_nowait() 41 0.03716 0.04078 0.04257 1.19% Castro::normalize_species() 62 0.04118 0.0418 0.04235 1.19% StateData::FillBoundary(geom) 41 0.03386 0.03681 0.03972 1.11% FillPatchIterator::Initialize 41 0.02927 0.03316 0.03556 1.00% Castro::construct_new_gravity_source() 10 0.02331 0.0261 0.02959 0.83% Gravity::interpolate_monopole_grav() 21 0.02808 0.0284 0.02861 0.80% Castro::computeTemp() 63 0.01891 0.01979 0.02044 0.57% Castro::initialize_do_advance() 10 0.01265 0.01704 0.01922 0.54% VisMF::Write(FabArray) 2 0.01322 0.01429 0.01722 0.48% FabArray::Saxpy() 20 0.01261 0.01395 0.01469 0.41% Castro::initialize_advance() 10 0.004158 0.01011 0.01351 0.38% FabArray::setDomainBndry() 41 0.007724 0.01018 0.01172 0.33% MultiFab::contains_nan() 20 0.009992 0.01069 0.01164 0.33% Castro::construct_old_gravity_source() 10 0.007664 0.01027 0.01085 0.30% Amr::writePlotFile() 2 0.00706 0.009736 0.01068 0.30% Castro::initMFs() 1 0.00688 0.008587 0.01007 0.28% StateData::define() 4 0.005707 0.007291 0.009144 0.26% Castro::construct_new_source() 50 0.005902 0.006304 0.006664 0.19% Castro::enforce_min_density() 62 0.00568 0.00606 0.0065 0.18% main() 1 0.005137 0.005898 0.006409 0.18% Castro::swap_state_time_levels() 10 0.003349 0.004467 0.004713 0.13% Gravity::get_new_grav_vector() 11 0.003215 0.003778 0.004505 0.13% Gravity::get_old_grav_vector() 10 0.001918 0.002427 0.002907 0.08% Amr::coarseTimeStep() 10 0.001413 0.002122 0.002718 0.08% Castro::buildMetrics() 1 0.00161 0.00201 0.002383 0.07% Castro::finalize_do_advance() 10 0.0006581 0.001553 0.001893 0.05% Castro::expand_state() 10 0.0007098 0.0009094 0.001058 0.03% Amr::InitAmr() 1 0.0002778 0.0004401 0.0007255 0.02% DistributionMapping::LeastUsedCPUs() 1 1.135e-05 0.0003988 0.0005988 0.02% Amr::timeStep() 10 0.0001705 0.0002552 0.0004314 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002906 0.0003079 0.0003555 0.01% Castro::clean_state() 62 0.0001404 0.0001607 0.0001791 0.01% Castro::enforce_consistent_e() 1 8.586e-05 0.0001119 0.0001429 0.00% StateDataPhysBCFunct::() 41 9.204e-05 0.0001054 0.0001227 0.00% Castro::finalize_advance() 10 9.248e-05 0.0001008 0.0001055 0.00% FabArray::ParallelCopy() 41 6.712e-05 7.787e-05 0.0001018 0.00% Castro::Castro() 1 5.584e-05 6.999e-05 8.5e-05 0.00% FillPatchSingleLevel 41 6.406e-05 7.151e-05 8.205e-05 0.00% FabArrayBase::getCPC() 41 4.602e-05 6.317e-05 7.884e-05 0.00% Castro::construct_old_source() 50 5.757e-05 6.972e-05 7.848e-05 0.00% Amr::writeSmallPlotFile() 1 2.562e-05 6.606e-05 7.678e-05 0.00% Amr::FinalizeInit() 1 3.874e-06 1.379e-05 7.622e-05 0.00% Castro::do_old_sources() 10 5.129e-05 6.106e-05 6.985e-05 0.00% Castro::do_new_sources() 10 5.686e-05 6.397e-05 6.807e-05 0.00% Castro::advance() 10 3.219e-05 4.647e-05 5.902e-05 0.00% Castro::apply_source_to_state() 20 3.947e-05 4.705e-05 5.715e-05 0.00% Castro::subcycle_advance_ctu() 10 4.14e-05 4.926e-05 5.667e-05 0.00% Castro::construct_old_gravity() 10 3.875e-05 4.214e-05 5.221e-05 0.00% Castro::construct_new_gravity() 10 3.393e-05 3.957e-05 4.693e-05 0.00% Castro::enforce_speed_limit() 62 2.56e-05 2.84e-05 3.59e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.339e-05 2.785e-05 3.208e-05 0.00% Amr::defBaseLevel() 1 1.821e-05 2.47e-05 3.129e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.466e-05 2.818e-05 0.00% Castro::check_for_nan() 20 2.005e-05 2.221e-05 2.665e-05 0.00% Castro::post_timestep() 10 1.554e-05 1.868e-05 2.089e-05 0.00% Amr::initSubcycle() 1 8.473e-06 1.336e-05 1.877e-05 0.00% Castro::retry_advance_ctu() 10 4.808e-06 8.704e-06 1.739e-05 0.00% Castro::create_source_corrector() 10 8.633e-06 1.097e-05 1.594e-05 0.00% Gravity::swapTimeLevels() 10 9.686e-06 1.108e-05 1.269e-05 0.00% Castro::FluxRegCrseInit 10 7.862e-06 9.099e-06 1.138e-05 0.00% Gravity::set_mass_offset() 10 9.319e-06 1.049e-05 1.129e-05 0.00% Castro::computeNewDt() 9 8.313e-06 8.893e-06 9.416e-06 0.00% Amr::InitializeInit() 1 1.823e-06 3.228e-06 7.819e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.683e-06 4.713e-06 5.919e-06 0.00% Castro::post_init() 1 2.961e-06 3.929e-06 5.466e-06 0.00% Castro::computeInitialDt() 2 3.568e-06 3.959e-06 4.556e-06 0.00% Castro::post_regrid() 1 2.428e-06 3.481e-06 4.122e-06 0.00% Castro::FluxRegFineAdd() 10 2.086e-06 2.378e-06 2.572e-06 0.00% Amr::init() 1 1.679e-06 2.203e-06 2.55e-06 0.00% Amr::initialInit() 1 1.147e-06 1.633e-06 2.112e-06 0.00% DistributionMapping::Distribute() 1 8.47e-07 1.199e-06 1.653e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.568 3.569 3.569 100.00% Amr::coarseTimeStep() 10 3.313 3.313 3.313 92.82% Amr::timeStep() 10 3.3 3.301 3.302 92.51% Castro::advance() 10 3.284 3.285 3.285 92.05% Castro::subcycle_advance_ctu() 10 3.205 3.211 3.222 90.28% Castro::do_advance_ctu() 10 3.205 3.211 3.222 90.28% Castro::construct_ctu_hydro_source() 10 2.287 2.356 2.396 67.13% Gravity::make_radial_gravity() 21 0.3357 0.3457 0.3585 10.05% Amr::init() 1 0.2387 0.239 0.2392 6.70% Gravity::get_new_grav_vector() 11 0.2265 0.2285 0.2298 6.44% Amr::initialInit() 1 0.2222 0.2229 0.223 6.25% Castro::construct_old_gravity() 10 0.1902 0.1989 0.2099 5.88% Gravity::get_old_grav_vector() 10 0.1895 0.1982 0.2092 5.86% Castro::construct_new_gravity() 10 0.1914 0.1928 0.1937 5.43% Amr::InitializeInit() 1 0.08622 0.1192 0.1828 5.12% Amr::defBaseLevel() 1 0.08622 0.1192 0.1828 5.12% FillPatchIterator::Initialize 41 0.1529 0.1672 0.1824 5.11% Castro::initialize_do_advance() 10 0.1509 0.1617 0.1714 4.80% Castro::initData() 1 0.06955 0.09892 0.159 4.46% FillPatchSingleLevel 41 0.1125 0.1238 0.1454 4.07% Amr::FinalizeInit() 1 0.04005 0.1037 0.1366 3.83% Castro::estTimeStep() 21 0.03154 0.09331 0.1329 3.72% Castro::expand_state() 10 0.1026 0.1148 0.1249 3.50% Castro::clean_state() 62 0.1154 0.1171 0.1184 3.32% FabArray::ParallelCopy() 41 0.07513 0.08682 0.1114 3.12% Castro::computeInitialDt() 2 0.002319 0.06615 0.09931 2.78% amrex::Copy() 193 0.06024 0.07101 0.07927 2.22% FabArray::setVal() 143 0.05919 0.06791 0.07834 2.19% Castro::initialize_advance() 10 0.05825 0.07047 0.07657 2.15% Castro::do_new_sources() 10 0.06037 0.06655 0.07506 2.10% FabArray::ParallelCopy_finish() 41 0.03415 0.04588 0.07398 2.07% Castro::computeTemp() 63 0.06906 0.07019 0.07149 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04934 0.0504 0.05106 1.43% Castro::reset_internal_energy(Fab) 1008 0.04904 0.0501 0.05076 1.42% Castro::do_old_sources() 10 0.04065 0.04509 0.04621 1.29% FabArray::ParallelCopy_nowait() 41 0.03727 0.04087 0.04264 1.19% Castro::normalize_species() 62 0.04118 0.0418 0.04235 1.19% StateDataPhysBCFunct::() 41 0.03396 0.03692 0.03982 1.12% StateData::FillBoundary(geom) 41 0.03386 0.03681 0.03972 1.11% Castro::post_init() 1 0.03602 0.03671 0.03707 1.04% Castro::construct_new_source() 50 0.0295 0.0324 0.03601 1.01% Castro::construct_new_gravity_source() 10 0.02331 0.0261 0.02959 0.83% Gravity::interpolate_monopole_grav() 21 0.02808 0.0284 0.02861 0.80% Amr::writePlotFile() 2 0.02638 0.02664 0.02693 0.75% VisMF::Write(FabArray) 2 0.01322 0.01429 0.01722 0.48% Castro::post_timestep() 10 0.01553 0.01594 0.0164 0.46% Castro::apply_source_to_state() 20 0.01267 0.014 0.01474 0.41% FabArray::Saxpy() 20 0.01261 0.01395 0.01469 0.41% Castro::Castro() 1 0.01026 0.01252 0.01461 0.41% FabArray::setDomainBndry() 41 0.007724 0.01018 0.01172 0.33% Castro::check_for_nan() 20 0.01001 0.01071 0.01166 0.33% MultiFab::contains_nan() 20 0.009992 0.01069 0.01164 0.33% Castro::construct_old_source() 50 0.007729 0.01033 0.01091 0.31% Castro::construct_old_gravity_source() 10 0.007664 0.01027 0.01085 0.30% Castro::initMFs() 1 0.00688 0.008587 0.01007 0.28% AmrLevel::AmrLevel(dm) 1 0.00573 0.007319 0.009176 0.26% StateData::define() 4 0.005707 0.007291 0.009144 0.26% Castro::computeNewDt() 9 0.008469 0.00848 0.008488 0.24% Castro::enforce_min_density() 62 0.00568 0.00606 0.0065 0.18% Castro::swap_state_time_levels() 10 0.003349 0.004467 0.004713 0.13% Castro::finalize_advance() 10 0.002903 0.003402 0.003867 0.11% Castro::post_regrid() 1 0.001582 0.001968 0.002919 0.08% Castro::buildMetrics() 1 0.001722 0.002177 0.002604 0.07% Castro::finalize_do_advance() 10 0.0006581 0.001553 0.001893 0.05% Amr::InitAmr() 1 0.0002871 0.0004534 0.0007443 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.75e-05 0.0004047 0.0006054 0.02% DistributionMapping::LeastUsedCPUs() 1 1.135e-05 0.0003988 0.0005988 0.02% Castro::enforce_consistent_e() 1 8.586e-05 0.0001119 0.0001429 0.00% FabArrayBase::getCPC() 41 7.384e-05 8.783e-05 0.0001067 0.00% Amr::writeSmallPlotFile() 1 2.562e-05 6.606e-05 7.678e-05 0.00% Castro::enforce_speed_limit() 62 2.56e-05 2.84e-05 3.59e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.466e-05 2.818e-05 0.00% Amr::initSubcycle() 1 8.473e-06 1.336e-05 1.877e-05 0.00% Castro::retry_advance_ctu() 10 4.808e-06 8.704e-06 1.739e-05 0.00% Castro::create_source_corrector() 10 8.633e-06 1.097e-05 1.594e-05 0.00% Gravity::swapTimeLevels() 10 9.686e-06 1.108e-05 1.269e-05 0.00% Castro::FluxRegCrseInit 10 7.862e-06 9.099e-06 1.138e-05 0.00% Gravity::set_mass_offset() 10 9.319e-06 1.049e-05 1.129e-05 0.00% Castro::FluxRegFineAdd() 10 2.086e-06 2.378e-06 2.572e-06 0.00% DistributionMapping::Distribute() 1 8.47e-07 1.199e-06 1.653e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-21-gb487434b948f) finalized