MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-26-ga232be4e275b) initialized Starting run at 06:47:26 UTC on 2023-01-25. Successfully read inputs file ... Castro git describe: 23.01-19-g3fdf87713 AMReX git describe: 23.01-26-ga232be4e2 Microphysics git describe: 23.01-4-gd64aa25b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019593386 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354779811 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353244229 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328188347 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327978324 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354248663 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328808419 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311353816 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311173579 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310948667 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312047734 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010131605 seconds Ending run at 06:47:29 UTC on 2023-01-25. Run time = 3.587864129 Run time without initialization = 3.336775155 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.586 ... 3.587 ... 3.588 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3024 2.3422 2.3972 66.81% Gravity::make_radial_gravity() 21 0.3244 0.3336 0.3511 9.79% Castro::initData() 1 0.04827 0.09965 0.159 4.43% Castro::estTimeStep() 21 0.03609 0.09409 0.1541 4.30% Castro::do_advance_ctu() 10 0.01866 0.07599 0.1181 3.29% FabArray::ParallelCopy_finish() 41 0.03764 0.04817 0.07881 2.20% FabArray::setVal() 143 0.05688 0.06681 0.0772 2.15% amrex::Copy() 193 0.0588 0.0698 0.07644 2.13% Castro::reset_internal_energy(Fab) 1008 0.04882 0.05033 0.0519 1.45% Castro::normalize_species() 62 0.04108 0.04199 0.04253 1.19% FabArray::ParallelCopy_nowait() 41 0.03635 0.04055 0.04202 1.17% Amr::writePlotFile() 2 0.03472 0.03889 0.04136 1.15% StateData::FillBoundary(geom) 41 0.0356 0.0367 0.03935 1.10% FillPatchIterator::Initialize 41 0.02843 0.03312 0.03604 1.00% Castro::construct_new_gravity_source() 10 0.0231 0.02606 0.02978 0.83% Gravity::interpolate_monopole_grav() 21 0.02833 0.02872 0.02909 0.81% Castro::computeTemp() 63 0.01905 0.02024 0.02088 0.58% VisMF::Write(FabArray) 2 0.01357 0.01513 0.01997 0.56% Castro::initialize_do_advance() 10 0.01182 0.01635 0.01912 0.53% FabArray::Saxpy() 20 0.01249 0.01375 0.01441 0.40% Castro::initialize_advance() 10 0.004111 0.01001 0.01354 0.38% MultiFab::contains_nan() 20 0.01006 0.01085 0.01195 0.33% FabArray::setDomainBndry() 41 0.008022 0.009991 0.01157 0.32% Castro::construct_old_gravity_source() 10 0.007453 0.01022 0.01092 0.30% Castro::initMFs() 1 0.006862 0.008798 0.01007 0.28% StateData::define() 4 0.005701 0.007222 0.008228 0.23% Castro::construct_new_source() 50 0.005627 0.006207 0.006479 0.18% main() 1 0.004843 0.005922 0.006395 0.18% Castro::swap_state_time_levels() 10 0.00332 0.004849 0.006385 0.18% Castro::enforce_min_density() 62 0.005632 0.006051 0.006294 0.18% Gravity::get_new_grav_vector() 11 0.003141 0.003833 0.004405 0.12% Gravity::get_old_grav_vector() 10 0.001774 0.00242 0.003043 0.08% Amr::coarseTimeStep() 10 0.001358 0.002063 0.002709 0.08% Castro::buildMetrics() 1 0.00161 0.002068 0.002375 0.07% Castro::finalize_do_advance() 10 0.0006415 0.001518 0.001876 0.05% Castro::expand_state() 10 0.0006282 0.0008044 0.001019 0.03% Amr::InitAmr() 1 0.000271 0.0004079 0.0004829 0.01% Amr::timeStep() 10 0.0001809 0.0002404 0.000467 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002894 0.0003018 0.0003135 0.01% DistributionMapping::LeastUsedCPUs() 1 7.63e-06 0.0001126 0.0002745 0.01% Castro::clean_state() 62 0.0001348 0.000146 0.0001606 0.00% Castro::enforce_consistent_e() 1 7.821e-05 0.0001147 0.0001494 0.00% Castro::finalize_advance() 10 7.609e-05 9.321e-05 0.0001132 0.00% StateDataPhysBCFunct::() 41 8.815e-05 9.873e-05 0.0001101 0.00% Castro::Castro() 1 6.21e-05 7.472e-05 9.266e-05 0.00% Castro::construct_old_source() 50 5.415e-05 6.905e-05 7.855e-05 0.00% Amr::FinalizeInit() 1 3.984e-06 1.405e-05 7.751e-05 0.00% Amr::writeSmallPlotFile() 1 2.695e-05 5.291e-05 7.747e-05 0.00% FabArray::ParallelCopy() 41 6.848e-05 7.142e-05 7.551e-05 0.00% Castro::do_new_sources() 10 4.832e-05 5.94e-05 7.104e-05 0.00% FillPatchSingleLevel 41 5.978e-05 6.449e-05 7.016e-05 0.00% Castro::do_old_sources() 10 4.931e-05 5.837e-05 6.706e-05 0.00% FabArrayBase::getCPC() 41 4.065e-05 5.308e-05 6.251e-05 0.00% Castro::subcycle_advance_ctu() 10 3.295e-05 4.47e-05 5.42e-05 0.00% Castro::advance() 10 3.584e-05 4.026e-05 5.225e-05 0.00% Castro::apply_source_to_state() 20 3.466e-05 4.426e-05 5.187e-05 0.00% Castro::construct_new_gravity() 10 3.411e-05 3.807e-05 4.936e-05 0.00% Castro::construct_old_gravity() 10 3.472e-05 3.881e-05 4.115e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.622e-05 3.144e-05 3.658e-05 0.00% Castro::enforce_speed_limit() 62 2.481e-05 2.795e-05 3.277e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.798e-05 3.273e-05 0.00% Amr::defBaseLevel() 1 1.704e-05 2.431e-05 3.132e-05 0.00% Castro::check_for_nan() 20 1.856e-05 2.222e-05 2.549e-05 0.00% Castro::post_timestep() 10 1.659e-05 1.767e-05 1.871e-05 0.00% Amr::initSubcycle() 1 9.313e-06 1.302e-05 1.652e-05 0.00% Gravity::swapTimeLevels() 10 6.259e-06 1.059e-05 1.38e-05 0.00% Castro::create_source_corrector() 10 6.89e-06 9.348e-06 1.151e-05 0.00% Gravity::set_mass_offset() 10 9.066e-06 1.011e-05 1.09e-05 0.00% Castro::FluxRegCrseInit 10 7.495e-06 8.462e-06 1.006e-05 0.00% Castro::computeNewDt() 9 7.744e-06 8.711e-06 9.261e-06 0.00% Castro::retry_advance_ctu() 10 5.462e-06 6.077e-06 6.773e-06 0.00% Castro::post_init() 1 2.757e-06 4.169e-06 5.327e-06 0.00% Amr::InitializeInit() 1 2.249e-06 3.005e-06 5.293e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.929e-06 4.47e-06 5.245e-06 0.00% Castro::computeInitialDt() 2 3.275e-06 4.076e-06 4.927e-06 0.00% Castro::post_regrid() 1 2.294e-06 3.415e-06 4.602e-06 0.00% Castro::FluxRegFineAdd() 10 1.79e-06 2.469e-06 3.164e-06 0.00% Amr::init() 1 1.66e-06 2.397e-06 2.842e-06 0.00% Amr::initialInit() 1 1.241e-06 1.656e-06 2.143e-06 0.00% DistributionMapping::Distribute() 1 1.085e-06 1.205e-06 1.317e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.586 3.587 3.588 100.00% Amr::coarseTimeStep() 10 3.294 3.294 3.294 91.80% Amr::timeStep() 10 3.281 3.281 3.282 91.48% Castro::advance() 10 3.265 3.265 3.266 91.02% Castro::subcycle_advance_ctu() 10 3.184 3.192 3.205 89.34% Castro::do_advance_ctu() 10 3.184 3.192 3.205 89.34% Castro::construct_ctu_hydro_source() 10 2.302 2.342 2.397 66.81% Gravity::make_radial_gravity() 21 0.3393 0.3495 0.3644 10.16% Amr::init() 1 0.2504 0.2505 0.2507 6.99% Gravity::get_new_grav_vector() 11 0.2295 0.2319 0.2335 6.51% Amr::initialInit() 1 0.2307 0.2311 0.2316 6.46% Castro::construct_old_gravity() 10 0.194 0.2011 0.2131 5.94% Gravity::get_old_grav_vector() 10 0.1932 0.2004 0.2125 5.92% Castro::construct_new_gravity() 10 0.192 0.1933 0.1942 5.41% FillPatchIterator::Initialize 41 0.1555 0.1688 0.1876 5.23% Amr::InitializeInit() 1 0.07041 0.1246 0.1872 5.22% Amr::defBaseLevel() 1 0.0704 0.1246 0.1872 5.22% Castro::initialize_do_advance() 10 0.1522 0.1616 0.1681 4.69% Castro::initData() 1 0.05236 0.1043 0.1642 4.58% Amr::FinalizeInit() 1 0.04442 0.1066 0.1603 4.47% Castro::estTimeStep() 21 0.03609 0.09409 0.1541 4.30% FillPatchSingleLevel 41 0.1149 0.1257 0.1511 4.21% Castro::expand_state() 10 0.1043 0.1154 0.1237 3.45% Castro::clean_state() 62 0.1153 0.1178 0.1205 3.36% Castro::computeInitialDt() 2 0.003223 0.06598 0.1201 3.35% FabArray::ParallelCopy() 41 0.07901 0.08887 0.1153 3.21% FabArray::ParallelCopy_finish() 41 0.03764 0.04817 0.07881 2.20% Castro::initialize_advance() 10 0.05556 0.06958 0.07773 2.17% FabArray::setVal() 143 0.05688 0.06681 0.0772 2.15% amrex::Copy() 193 0.0588 0.0698 0.07644 2.13% Castro::do_new_sources() 10 0.06001 0.0662 0.07541 2.10% Castro::computeTemp() 63 0.06879 0.07086 0.07297 2.03% Amr::writePlotFile() 2 0.05575 0.05637 0.05694 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04911 0.05063 0.05221 1.46% Castro::reset_internal_energy(Fab) 1008 0.04882 0.05033 0.0519 1.45% Castro::do_old_sources() 10 0.04036 0.04503 0.04639 1.29% Castro::normalize_species() 62 0.04108 0.04199 0.04253 1.19% FabArray::ParallelCopy_nowait() 41 0.03643 0.04063 0.0421 1.17% Castro::post_init() 1 0.0396 0.03993 0.04017 1.12% StateDataPhysBCFunct::() 41 0.03569 0.0368 0.03945 1.10% StateData::FillBoundary(geom) 41 0.0356 0.0367 0.03935 1.10% Castro::construct_new_source() 50 0.02929 0.03226 0.03622 1.01% Castro::construct_new_gravity_source() 10 0.0231 0.02606 0.02978 0.83% Gravity::interpolate_monopole_grav() 21 0.02833 0.02872 0.02909 0.81% VisMF::Write(FabArray) 2 0.01357 0.01513 0.01997 0.56% Castro::post_timestep() 10 0.01557 0.01592 0.01665 0.46% Castro::Castro() 1 0.00973 0.01282 0.01474 0.41% Castro::apply_source_to_state() 20 0.01253 0.01379 0.01445 0.40% FabArray::Saxpy() 20 0.01249 0.01375 0.01441 0.40% Castro::check_for_nan() 20 0.01009 0.01087 0.01197 0.33% MultiFab::contains_nan() 20 0.01006 0.01085 0.01195 0.33% FabArray::setDomainBndry() 41 0.008022 0.009991 0.01157 0.32% Castro::construct_old_source() 50 0.007507 0.01029 0.011 0.31% Castro::construct_old_gravity_source() 10 0.007453 0.01022 0.01092 0.30% Castro::initMFs() 1 0.006862 0.008798 0.01007 0.28% Castro::computeNewDt() 9 0.008411 0.008419 0.008426 0.23% AmrLevel::AmrLevel(dm) 1 0.005728 0.007254 0.008262 0.23% StateData::define() 4 0.005701 0.007222 0.008228 0.23% Castro::swap_state_time_levels() 10 0.00332 0.004849 0.006385 0.18% Castro::enforce_min_density() 62 0.005632 0.006051 0.006294 0.18% Castro::finalize_advance() 10 0.003024 0.003418 0.003834 0.11% Castro::post_regrid() 1 0.001558 0.002334 0.002928 0.08% Castro::buildMetrics() 1 0.001732 0.002243 0.002599 0.07% Castro::finalize_do_advance() 10 0.0006415 0.001518 0.001876 0.05% Amr::InitAmr() 1 0.0002803 0.000421 0.0004994 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.28e-05 0.0001183 0.000281 0.01% DistributionMapping::LeastUsedCPUs() 1 7.63e-06 0.0001126 0.0002745 0.01% Castro::enforce_consistent_e() 1 7.821e-05 0.0001147 0.0001494 0.00% FabArrayBase::getCPC() 41 6.225e-05 8.106e-05 8.871e-05 0.00% Amr::writeSmallPlotFile() 1 2.695e-05 5.291e-05 7.747e-05 0.00% Castro::enforce_speed_limit() 62 2.481e-05 2.795e-05 3.277e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.798e-05 3.273e-05 0.00% Amr::initSubcycle() 1 9.313e-06 1.302e-05 1.652e-05 0.00% Gravity::swapTimeLevels() 10 6.259e-06 1.059e-05 1.38e-05 0.00% Castro::create_source_corrector() 10 6.89e-06 9.348e-06 1.151e-05 0.00% Gravity::set_mass_offset() 10 9.066e-06 1.011e-05 1.09e-05 0.00% Castro::FluxRegCrseInit 10 7.495e-06 8.462e-06 1.006e-05 0.00% Castro::retry_advance_ctu() 10 5.462e-06 6.077e-06 6.773e-06 0.00% Castro::FluxRegFineAdd() 10 1.79e-06 2.469e-06 3.164e-06 0.00% DistributionMapping::Distribute() 1 1.085e-06 1.205e-06 1.317e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-26-ga232be4e275b) finalized