MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-26-ga232be4e275b) initialized Starting run at 06:47:16 UTC on 2023-01-26. Successfully read inputs file ... Castro git describe: 23.01-20-g08651568d AMReX git describe: 23.01-26-ga232be4e2 Microphysics git describe: 23.01-5-g4a082ffc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016242954 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362517954 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341854429 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.372185878 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33354275 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359509781 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332597477 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31477719 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317926204 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.322677349 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316007444 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010278834 seconds Ending run at 06:47:19 UTC on 2023-01-26. Run time = 3.585531824 Run time without initialization = 3.391156508 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.584 ... 3.585 ... 3.586 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2585 2.3732 2.4110 67.24% Gravity::make_radial_gravity() 21 0.3244 0.3351 0.3557 9.92% Castro::do_advance_ctu() 10 0.06702 0.1059 0.226 6.30% Castro::initData() 1 0.0396 0.08295 0.1235 3.44% Castro::estTimeStep() 21 0.02236 0.07047 0.1194 3.33% amrex::Copy() 193 0.05875 0.07278 0.08012 2.23% FabArray::ParallelCopy_finish() 41 0.03521 0.04786 0.07883 2.20% FabArray::setVal() 143 0.0632 0.06909 0.07831 2.18% Castro::reset_internal_energy(Fab) 1008 0.04766 0.0498 0.05146 1.44% FabArray::ParallelCopy_nowait() 41 0.03544 0.04147 0.04371 1.22% Castro::normalize_species() 62 0.04133 0.04191 0.04336 1.21% StateData::FillBoundary(geom) 41 0.03276 0.03725 0.04109 1.15% FillPatchIterator::Initialize 41 0.02802 0.03416 0.03632 1.01% Gravity::interpolate_monopole_grav() 21 0.0277 0.02867 0.02921 0.81% Castro::construct_new_gravity_source() 10 0.02346 0.02581 0.02888 0.81% Castro::computeTemp() 63 0.01774 0.01968 0.02106 0.59% Castro::initialize_do_advance() 10 0.01153 0.01736 0.0198 0.55% VisMF::Write(FabArray) 2 0.01365 0.01433 0.0179 0.50% FabArray::Saxpy() 20 0.01259 0.01383 0.01459 0.41% Castro::initialize_advance() 10 0.008339 0.01089 0.01398 0.39% FabArray::setDomainBndry() 41 0.007839 0.01068 0.0118 0.33% MultiFab::contains_nan() 20 0.009915 0.01039 0.01116 0.31% Castro::construct_old_gravity_source() 10 0.007354 0.01022 0.01088 0.30% Amr::writePlotFile() 2 0.006776 0.0095 0.0102 0.28% Castro::initMFs() 1 0.006902 0.007475 0.007842 0.22% StateData::define() 4 0.005845 0.006295 0.006553 0.18% Castro::construct_new_source() 50 0.005493 0.006227 0.006527 0.18% main() 1 0.004913 0.005727 0.006363 0.18% Castro::enforce_min_density() 62 0.005774 0.005988 0.00616 0.17% Gravity::get_new_grav_vector() 11 0.002933 0.004044 0.005396 0.15% Castro::swap_state_time_levels() 10 0.002151 0.004427 0.005295 0.15% Gravity::get_old_grav_vector() 10 0.001869 0.00252 0.002874 0.08% Amr::coarseTimeStep() 10 0.00177 0.002292 0.002618 0.07% Castro::finalize_do_advance() 10 0.0005736 0.001694 0.002122 0.06% Castro::buildMetrics() 1 0.001616 0.00176 0.001864 0.05% Castro::expand_state() 10 0.0006022 0.0008357 0.0009601 0.03% Amr::timeStep() 10 0.0001765 0.0002566 0.0004844 0.01% Amr::InitAmr() 1 0.000273 0.0003079 0.0004527 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002871 0.0003042 0.0003301 0.01% DistributionMapping::LeastUsedCPUs() 1 7.682e-06 0.0001758 0.0002167 0.01% Castro::clean_state() 62 0.0001326 0.0001431 0.0001608 0.00% StateDataPhysBCFunct::() 41 9.129e-05 0.0001083 0.0001491 0.00% Castro::finalize_advance() 10 8.256e-05 9.756e-05 0.0001178 0.00% Castro::enforce_consistent_e() 1 8.711e-05 9.124e-05 9.917e-05 0.00% Amr::FinalizeInit() 1 3.816e-06 1.551e-05 9.012e-05 0.00% Castro::Castro() 1 6.426e-05 6.732e-05 8.094e-05 0.00% FabArray::ParallelCopy() 41 6.185e-05 7.097e-05 7.772e-05 0.00% Castro::construct_old_source() 50 5.14e-05 6.587e-05 7.605e-05 0.00% FillPatchSingleLevel 41 5.682e-05 6.447e-05 7.324e-05 0.00% Amr::writeSmallPlotFile() 1 3.145e-05 5.517e-05 7.14e-05 0.00% Castro::do_new_sources() 10 4.916e-05 6.035e-05 6.766e-05 0.00% FabArrayBase::getCPC() 41 4.209e-05 5.234e-05 6.487e-05 0.00% Castro::do_old_sources() 10 4.135e-05 5.74e-05 6.375e-05 0.00% Castro::construct_old_gravity() 10 3.421e-05 4.265e-05 5.261e-05 0.00% Castro::apply_source_to_state() 20 3.561e-05 4.346e-05 5.099e-05 0.00% Castro::advance() 10 3.438e-05 4.063e-05 4.975e-05 0.00% Castro::subcycle_advance_ctu() 10 3.629e-05 4.273e-05 4.887e-05 0.00% Castro::construct_new_gravity() 10 3.585e-05 4.071e-05 4.737e-05 0.00% Castro::enforce_speed_limit() 62 2.412e-05 2.819e-05 3.866e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.587e-05 3.344e-05 0.00% Amr::defBaseLevel() 1 1.702e-05 2.24e-05 3.287e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.903e-05 2.355e-05 3.13e-05 0.00% Castro::check_for_nan() 20 1.985e-05 2.115e-05 2.372e-05 0.00% Castro::post_timestep() 10 1.435e-05 1.871e-05 2.313e-05 0.00% Gravity::set_mass_offset() 10 8.299e-06 1.034e-05 1.237e-05 0.00% Gravity::swapTimeLevels() 10 9.226e-06 1.061e-05 1.216e-05 0.00% Castro::create_source_corrector() 10 7.683e-06 9.239e-06 1.176e-05 0.00% Amr::initSubcycle() 1 8.733e-06 9.88e-06 1.05e-05 0.00% Castro::computeNewDt() 9 7.75e-06 8.792e-06 9.554e-06 0.00% Castro::FluxRegCrseInit 10 6.92e-06 8.244e-06 9.328e-06 0.00% Castro::retry_advance_ctu() 10 5.03e-06 5.927e-06 6.745e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.117e-06 4.933e-06 6.242e-06 0.00% Amr::InitializeInit() 1 2.06e-06 2.586e-06 4.939e-06 0.00% Castro::computeInitialDt() 2 3.529e-06 4.13e-06 4.925e-06 0.00% Castro::post_init() 1 3.242e-06 3.709e-06 4.438e-06 0.00% Castro::post_regrid() 1 2.286e-06 3.146e-06 4.279e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.356e-06 3.162e-06 0.00% Amr::init() 1 1.684e-06 2.221e-06 2.61e-06 0.00% Amr::initialInit() 1 1.119e-06 1.472e-06 1.748e-06 0.00% DistributionMapping::Distribute() 1 9.36e-07 1.08e-06 1.603e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.584 3.585 3.586 100.00% Amr::coarseTimeStep() 10 3.375 3.375 3.375 94.12% Amr::timeStep() 10 3.362 3.363 3.363 93.80% Castro::advance() 10 3.346 3.346 3.347 93.34% Castro::subcycle_advance_ctu() 10 3.265 3.272 3.278 91.42% Castro::do_advance_ctu() 10 3.265 3.272 3.278 91.42% Castro::construct_ctu_hydro_source() 10 2.259 2.373 2.411 67.24% Gravity::make_radial_gravity() 21 0.3411 0.3522 0.3692 10.30% Gravity::get_new_grav_vector() 11 0.2259 0.2269 0.2284 6.37% Castro::construct_old_gravity() 10 0.2021 0.2091 0.2221 6.20% Gravity::get_old_grav_vector() 10 0.2013 0.2084 0.2215 6.18% Castro::construct_new_gravity() 10 0.1988 0.1993 0.2003 5.59% Amr::init() 1 0.1937 0.1939 0.194 5.41% FillPatchIterator::Initialize 41 0.161 0.1717 0.1833 5.11% Amr::initialInit() 1 0.1773 0.1778 0.1783 4.97% Castro::initialize_do_advance() 10 0.1531 0.165 0.1741 4.85% FillPatchSingleLevel 41 0.1144 0.1269 0.1474 4.11% Amr::InitializeInit() 1 0.06046 0.1051 0.1465 4.08% Amr::defBaseLevel() 1 0.06046 0.1051 0.1465 4.08% Castro::initData() 1 0.04389 0.0871 0.1275 3.56% Castro::expand_state() 10 0.1059 0.1174 0.1258 3.51% Castro::clean_state() 62 0.1137 0.1168 0.1201 3.35% Castro::estTimeStep() 21 0.02236 0.07047 0.1194 3.33% Amr::FinalizeInit() 1 0.03153 0.07265 0.1173 3.27% FabArray::ParallelCopy() 41 0.07698 0.08948 0.1144 3.19% Castro::computeInitialDt() 2 0.002162 0.04349 0.08819 2.46% amrex::Copy() 193 0.05875 0.07278 0.08012 2.23% FabArray::ParallelCopy_finish() 41 0.03521 0.04786 0.07883 2.20% FabArray::setVal() 143 0.0632 0.06909 0.07831 2.18% Castro::initialize_advance() 10 0.06384 0.07131 0.07738 2.16% Castro::do_new_sources() 10 0.06119 0.06634 0.07425 2.07% Castro::computeTemp() 63 0.06738 0.06979 0.07281 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04799 0.05011 0.05176 1.44% Castro::reset_internal_energy(Fab) 1008 0.04766 0.0498 0.05146 1.44% Castro::do_old_sources() 10 0.03929 0.04493 0.04611 1.29% FabArray::ParallelCopy_nowait() 41 0.03552 0.04155 0.0438 1.22% Castro::normalize_species() 62 0.04133 0.04191 0.04336 1.21% StateDataPhysBCFunct::() 41 0.03291 0.03736 0.0412 1.15% StateData::FillBoundary(geom) 41 0.03276 0.03725 0.04109 1.15% Castro::construct_new_source() 50 0.02968 0.03204 0.03525 0.98% Gravity::interpolate_monopole_grav() 21 0.0277 0.02867 0.02921 0.81% Castro::post_init() 1 0.02823 0.0286 0.02889 0.81% Castro::construct_new_gravity_source() 10 0.02346 0.02581 0.02888 0.81% Amr::writePlotFile() 2 0.02602 0.0265 0.02678 0.75% VisMF::Write(FabArray) 2 0.01365 0.01433 0.0179 0.50% Castro::post_timestep() 10 0.01563 0.01593 0.01616 0.45% Castro::apply_source_to_state() 20 0.01264 0.01387 0.01464 0.41% FabArray::Saxpy() 20 0.01259 0.01383 0.01459 0.41% Castro::Castro() 1 0.01033 0.01149 0.01219 0.34% FabArray::setDomainBndry() 41 0.007839 0.01068 0.0118 0.33% Castro::check_for_nan() 20 0.009936 0.01041 0.01118 0.31% MultiFab::contains_nan() 20 0.009915 0.01039 0.01116 0.31% Castro::construct_old_source() 50 0.007405 0.01029 0.01095 0.31% Castro::construct_old_gravity_source() 10 0.007354 0.01022 0.01088 0.30% Castro::computeNewDt() 9 0.008461 0.008475 0.008484 0.24% Castro::initMFs() 1 0.006902 0.007475 0.007842 0.22% AmrLevel::AmrLevel(dm) 1 0.005872 0.006319 0.006576 0.18% StateData::define() 4 0.005845 0.006295 0.006553 0.18% Castro::enforce_min_density() 62 0.005774 0.005988 0.00616 0.17% Castro::swap_state_time_levels() 10 0.002151 0.004427 0.005295 0.15% Castro::finalize_advance() 10 0.002962 0.00335 0.003778 0.11% Castro::finalize_do_advance() 10 0.0005736 0.001694 0.002122 0.06% Castro::buildMetrics() 1 0.001732 0.001894 0.002019 0.06% Castro::post_regrid() 1 0.001642 0.00172 0.001936 0.05% Amr::InitAmr() 1 0.0002827 0.0003178 0.0004628 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.308e-05 0.0001819 0.000224 0.01% DistributionMapping::LeastUsedCPUs() 1 7.682e-06 0.0001758 0.0002167 0.01% Castro::enforce_consistent_e() 1 8.711e-05 9.124e-05 9.917e-05 0.00% FabArrayBase::getCPC() 41 6.386e-05 7.821e-05 9.261e-05 0.00% Amr::writeSmallPlotFile() 1 3.145e-05 5.517e-05 7.14e-05 0.00% Castro::enforce_speed_limit() 62 2.412e-05 2.819e-05 3.866e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.587e-05 3.344e-05 0.00% Gravity::set_mass_offset() 10 8.299e-06 1.034e-05 1.237e-05 0.00% Gravity::swapTimeLevels() 10 9.226e-06 1.061e-05 1.216e-05 0.00% Castro::create_source_corrector() 10 7.683e-06 9.239e-06 1.176e-05 0.00% Amr::initSubcycle() 1 8.733e-06 9.88e-06 1.05e-05 0.00% Castro::FluxRegCrseInit 10 6.92e-06 8.244e-06 9.328e-06 0.00% Castro::retry_advance_ctu() 10 5.03e-06 5.927e-06 6.745e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.356e-06 3.162e-06 0.00% DistributionMapping::Distribute() 1 9.36e-07 1.08e-06 1.603e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-26-ga232be4e275b) finalized