MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-27-g756468d42106) initialized Starting run at 06:47:50 UTC on 2023-01-27. Successfully read inputs file ... Castro git describe: 23.01-21-g91c91fcdf AMReX git describe: 23.01-27-g756468d42 Microphysics git describe: 23.01-6-g7f50db76 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016417428 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.381084427 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350102152 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330763114 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331331307 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353636195 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340554034 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315933584 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315917171 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315097847 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316044666 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010424016 seconds Ending run at 06:47:54 UTC on 2023-01-27. Run time = 3.582821376 Run time without initialization = 3.397386991 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.581 ... 3.582 ... 3.583 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2910 2.3563 2.4025 67.06% Gravity::make_radial_gravity() 21 0.3224 0.3293 0.3443 9.61% Castro::do_advance_ctu() 10 0.03879 0.08633 0.154 4.30% Castro::estTimeStep() 21 0.02545 0.07272 0.1202 3.35% Castro::initData() 1 0.0395 0.07994 0.1173 3.28% FabArray::setVal() 143 0.06711 0.07512 0.08696 2.43% amrex::Copy() 193 0.06274 0.07294 0.08094 2.26% FabArray::ParallelCopy_finish() 41 0.03418 0.05098 0.06767 1.89% Castro::reset_internal_energy(Fab) 1008 0.04851 0.05009 0.05376 1.50% Castro::normalize_species() 62 0.0413 0.04215 0.04376 1.22% FabArray::ParallelCopy_nowait() 41 0.03614 0.04089 0.04236 1.18% Amr::writePlotFile() 2 0.03607 0.03918 0.04002 1.12% StateData::FillBoundary(geom) 41 0.034 0.03674 0.03853 1.08% FillPatchIterator::Initialize 41 0.02903 0.03366 0.03681 1.03% Castro::construct_new_gravity_source() 10 0.02353 0.02666 0.03198 0.89% Gravity::interpolate_monopole_grav() 21 0.02788 0.02906 0.0304 0.85% Castro::computeTemp() 63 0.01927 0.01989 0.02157 0.60% Castro::initialize_do_advance() 10 0.01212 0.01748 0.02081 0.58% VisMF::Write(FabArray) 2 0.01376 0.01458 0.01746 0.49% FabArray::Saxpy() 20 0.0124 0.01418 0.01507 0.42% Castro::initialize_advance() 10 0.00993 0.01213 0.01436 0.40% MultiFab::contains_nan() 20 0.00991 0.0109 0.01213 0.34% FabArray::setDomainBndry() 41 0.007684 0.01016 0.01165 0.33% Castro::construct_old_gravity_source() 10 0.007564 0.01024 0.01078 0.30% Castro::initMFs() 1 0.007031 0.007364 0.008483 0.24% StateData::define() 4 0.005774 0.006057 0.006536 0.18% Castro::construct_new_source() 50 0.005814 0.006274 0.006506 0.18% Castro::enforce_min_density() 62 0.00565 0.005984 0.00634 0.18% main() 1 0.004774 0.005755 0.006263 0.17% Castro::swap_state_time_levels() 10 0.003379 0.004453 0.00476 0.13% Gravity::get_new_grav_vector() 11 0.003105 0.003632 0.003884 0.11% Gravity::get_old_grav_vector() 10 0.001921 0.002365 0.00277 0.08% Amr::coarseTimeStep() 10 0.001531 0.002147 0.002638 0.07% Castro::finalize_do_advance() 10 0.0006435 0.001622 0.002005 0.06% Castro::buildMetrics() 1 0.001649 0.001747 0.001882 0.05% Castro::expand_state() 10 0.0006595 0.0008783 0.001122 0.03% Amr::timeStep() 10 0.0001782 0.0002559 0.0005545 0.02% Amr::InitAmr() 1 0.0002599 0.0003041 0.0004205 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002895 0.0003108 0.0003612 0.01% Castro::clean_state() 62 0.0001376 0.0001628 0.0002381 0.01% DistributionMapping::LeastUsedCPUs() 1 8.155e-06 0.0001343 0.0001811 0.01% StateDataPhysBCFunct::() 41 9.568e-05 0.0001046 0.0001288 0.00% Castro::finalize_advance() 10 8.16e-05 9.75e-05 0.0001117 0.00% Castro::enforce_consistent_e() 1 7.853e-05 8.944e-05 0.0001039 0.00% FabArrayBase::getCPC() 41 4.354e-05 5.519e-05 9.398e-05 0.00% Castro::Castro() 1 5.906e-05 7.097e-05 9.37e-05 0.00% FillPatchSingleLevel 41 5.849e-05 6.793e-05 9.217e-05 0.00% FabArray::ParallelCopy() 41 6.926e-05 7.678e-05 9.055e-05 0.00% Castro::construct_old_source() 50 5.875e-05 6.631e-05 8.585e-05 0.00% Amr::writeSmallPlotFile() 1 3.167e-05 5.83e-05 7.897e-05 0.00% Amr::FinalizeInit() 1 4.2e-06 1.337e-05 7.394e-05 0.00% Castro::do_old_sources() 10 5.118e-05 5.876e-05 6.808e-05 0.00% Castro::do_new_sources() 10 5.928e-05 6.334e-05 6.724e-05 0.00% Castro::apply_source_to_state() 20 3.684e-05 4.537e-05 5.53e-05 0.00% Castro::construct_old_gravity() 10 3.497e-05 4.218e-05 5.467e-05 0.00% Castro::subcycle_advance_ctu() 10 3.861e-05 4.416e-05 5.263e-05 0.00% Castro::construct_new_gravity() 10 3.313e-05 3.97e-05 5.084e-05 0.00% Castro::advance() 10 3.627e-05 4.089e-05 4.496e-05 0.00% Castro::enforce_speed_limit() 62 2.401e-05 2.86e-05 3.461e-05 0.00% Castro::check_for_nan() 20 2.062e-05 2.477e-05 3.435e-05 0.00% Castro::post_timestep() 10 1.574e-05 2.034e-05 3.034e-05 0.00% Amr::defBaseLevel() 1 1.744e-05 2.168e-05 2.871e-05 0.00% FabArrayBase::CPC::define() 2 2.108e-05 2.397e-05 2.825e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.885e-05 2.263e-05 2.763e-05 0.00% Amr::initSubcycle() 1 8.721e-06 1.109e-05 2.09e-05 0.00% Gravity::swapTimeLevels() 10 9.533e-06 1.139e-05 1.356e-05 0.00% Gravity::set_mass_offset() 10 9.395e-06 1.05e-05 1.2e-05 0.00% Castro::create_source_corrector() 10 7.983e-06 9.335e-06 1.069e-05 0.00% DistributionMapping::Distribute() 1 8.46e-07 2.032e-06 9.478e-06 0.00% Castro::computeNewDt() 9 6.814e-06 8.096e-06 8.959e-06 0.00% Castro::FluxRegCrseInit 10 7.015e-06 8.086e-06 8.843e-06 0.00% Castro::retry_advance_ctu() 10 4.981e-06 5.713e-06 6.112e-06 0.00% Amr::InitializeInit() 1 1.899e-06 2.599e-06 5.271e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.482e-06 4.051e-06 5.048e-06 0.00% Castro::computeInitialDt() 2 3.456e-06 4.21e-06 5.039e-06 0.00% Castro::post_init() 1 2.893e-06 3.571e-06 4.941e-06 0.00% Castro::post_regrid() 1 2.107e-06 2.911e-06 3.741e-06 0.00% Castro::FluxRegFineAdd() 10 1.985e-06 2.334e-06 2.76e-06 0.00% Amr::init() 1 1.81e-06 2.113e-06 2.512e-06 0.00% Amr::initialInit() 1 9.8e-07 1.513e-06 1.831e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.581 3.582 3.583 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 93.54% Amr::timeStep() 10 3.339 3.339 3.34 93.22% Castro::advance() 10 3.323 3.323 3.324 92.78% Castro::subcycle_advance_ctu() 10 3.234 3.241 3.249 90.70% Castro::do_advance_ctu() 10 3.234 3.241 3.249 90.69% Castro::construct_ctu_hydro_source() 10 2.291 2.356 2.403 67.06% Gravity::make_radial_gravity() 21 0.3396 0.3464 0.3582 10.00% Gravity::get_new_grav_vector() 11 0.2219 0.2284 0.2304 6.43% Castro::construct_old_gravity() 10 0.1984 0.2034 0.2121 5.92% Gravity::get_old_grav_vector() 10 0.1972 0.2027 0.2114 5.90% Castro::construct_new_gravity() 10 0.1972 0.2032 0.205 5.72% Amr::init() 1 0.1848 0.185 0.185 5.16% FillPatchIterator::Initialize 41 0.1571 0.1728 0.1832 5.11% Castro::initialize_do_advance() 10 0.1519 0.1653 0.1762 4.92% Amr::initialInit() 1 0.168 0.1682 0.1684 4.70% FillPatchSingleLevel 41 0.1141 0.1289 0.1416 3.95% Amr::InitializeInit() 1 0.06092 0.1019 0.1394 3.89% Amr::defBaseLevel() 1 0.06092 0.1019 0.1394 3.89% Castro::expand_state() 10 0.1053 0.1176 0.1284 3.58% Castro::clean_state() 62 0.1146 0.1176 0.1249 3.49% Castro::initData() 1 0.04369 0.08406 0.1218 3.40% Castro::estTimeStep() 21 0.02545 0.07272 0.1202 3.35% Amr::FinalizeInit() 1 0.02899 0.06629 0.1072 2.99% FabArray::ParallelCopy() 41 0.07615 0.09202 0.104 2.90% FabArray::setVal() 143 0.06711 0.07512 0.08696 2.43% Castro::initialize_advance() 10 0.07052 0.0786 0.08592 2.40% amrex::Copy() 193 0.06274 0.07294 0.08094 2.26% Castro::computeInitialDt() 2 0.00207 0.03954 0.08057 2.25% Castro::do_new_sources() 10 0.06068 0.06784 0.07963 2.22% Castro::computeTemp() 63 0.06833 0.07029 0.0757 2.11% FabArray::ParallelCopy_finish() 41 0.03418 0.05098 0.06767 1.89% Amr::writePlotFile() 2 0.05655 0.05676 0.05697 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04883 0.0504 0.05413 1.51% Castro::reset_internal_energy(Fab) 1008 0.04851 0.05009 0.05376 1.50% Castro::do_old_sources() 10 0.04011 0.04514 0.04636 1.29% Castro::normalize_species() 62 0.0413 0.04215 0.04376 1.22% FabArray::ParallelCopy_nowait() 41 0.03626 0.04097 0.04243 1.18% StateDataPhysBCFunct::() 41 0.03409 0.03684 0.03863 1.08% StateData::FillBoundary(geom) 41 0.034 0.03674 0.03853 1.08% Castro::construct_new_source() 50 0.02962 0.03294 0.03837 1.07% Castro::construct_new_gravity_source() 10 0.02353 0.02666 0.03198 0.89% Gravity::interpolate_monopole_grav() 21 0.02788 0.02906 0.0304 0.85% Castro::post_init() 1 0.02601 0.02616 0.02632 0.73% VisMF::Write(FabArray) 2 0.01376 0.01458 0.01746 0.49% Castro::post_timestep() 10 0.01559 0.0158 0.01601 0.45% Castro::apply_source_to_state() 20 0.01245 0.01422 0.01512 0.42% FabArray::Saxpy() 20 0.0124 0.01418 0.01507 0.42% Castro::Castro() 1 0.01123 0.0116 0.01253 0.35% Castro::check_for_nan() 20 0.009935 0.01092 0.01216 0.34% MultiFab::contains_nan() 20 0.00991 0.0109 0.01213 0.34% FabArray::setDomainBndry() 41 0.007684 0.01016 0.01165 0.33% Castro::construct_old_source() 50 0.007623 0.01031 0.01084 0.30% Castro::construct_old_gravity_source() 10 0.007564 0.01024 0.01078 0.30% Castro::computeNewDt() 9 0.008554 0.008563 0.008576 0.24% Castro::initMFs() 1 0.007031 0.007364 0.008483 0.24% AmrLevel::AmrLevel(dm) 1 0.005795 0.00608 0.006557 0.18% StateData::define() 4 0.005774 0.006057 0.006536 0.18% Castro::enforce_min_density() 62 0.00565 0.005984 0.00634 0.18% Castro::swap_state_time_levels() 10 0.003379 0.004453 0.00476 0.13% Castro::finalize_advance() 10 0.002959 0.003692 0.004552 0.13% Castro::buildMetrics() 1 0.001772 0.00188 0.002032 0.06% Castro::finalize_do_advance() 10 0.0006435 0.001622 0.002005 0.06% Castro::post_regrid() 1 0.001591 0.001658 0.00171 0.05% Amr::InitAmr() 1 0.0002697 0.0003152 0.0004295 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.26e-05 0.0001404 0.0001872 0.01% DistributionMapping::LeastUsedCPUs() 1 8.155e-06 0.0001343 0.0001811 0.01% FabArrayBase::getCPC() 41 6.629e-05 7.917e-05 0.0001222 0.00% Castro::enforce_consistent_e() 1 7.853e-05 8.944e-05 0.0001039 0.00% Amr::writeSmallPlotFile() 1 3.167e-05 5.83e-05 7.897e-05 0.00% Castro::enforce_speed_limit() 62 2.401e-05 2.86e-05 3.461e-05 0.00% FabArrayBase::CPC::define() 2 2.108e-05 2.397e-05 2.825e-05 0.00% Amr::initSubcycle() 1 8.721e-06 1.109e-05 2.09e-05 0.00% Gravity::swapTimeLevels() 10 9.533e-06 1.139e-05 1.356e-05 0.00% Gravity::set_mass_offset() 10 9.395e-06 1.05e-05 1.2e-05 0.00% Castro::create_source_corrector() 10 7.983e-06 9.335e-06 1.069e-05 0.00% DistributionMapping::Distribute() 1 8.46e-07 2.032e-06 9.478e-06 0.00% Castro::FluxRegCrseInit 10 7.015e-06 8.086e-06 8.843e-06 0.00% Castro::retry_advance_ctu() 10 4.981e-06 5.713e-06 6.112e-06 0.00% Castro::FluxRegFineAdd() 10 1.985e-06 2.334e-06 2.76e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-27-g756468d42106) finalized