MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-29-g225c605680e8) initialized Starting run at 06:47:19 UTC on 2023-01-30. Successfully read inputs file ... Castro git describe: 23.01-22-g69c150804 AMReX git describe: 23.01-29-g225c60568 Microphysics git describe: 23.01-7-g5e1d020c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017003744 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368759721 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.363711276 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.350602951 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335403655 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362747063 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.333132576 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314872688 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313796343 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314024119 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314985769 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.072502592 seconds Ending run at 06:47:23 UTC on 2023-01-30. Run time = 3.644901458 Run time without initialization = 3.451566081 Average number of zones advanced per microsecond: 0.759 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.644 ... 3.644 ... 3.645 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2836 2.3696 2.4083 66.07% Gravity::make_radial_gravity() 21 0.3234 0.3327 0.3444 9.45% Castro::do_advance_ctu() 10 0.0655 0.1065 0.1954 5.36% Castro::initData() 1 0.04031 0.08183 0.1212 3.33% Castro::estTimeStep() 21 0.03059 0.07001 0.1168 3.20% amrex::Copy() 193 0.06207 0.07207 0.08061 2.21% FabArray::setVal() 143 0.06576 0.07147 0.08039 2.21% Amr::writePlotFile() 2 0.06913 0.07188 0.07265 1.99% FabArray::ParallelCopy_finish() 41 0.03308 0.04529 0.06933 1.90% Castro::reset_internal_energy(Fab) 1008 0.0489 0.05032 0.0511 1.40% FabArray::ParallelCopy_nowait() 41 0.03651 0.04175 0.04388 1.20% Castro::normalize_species() 62 0.04104 0.04192 0.0426 1.17% StateData::FillBoundary(geom) 41 0.03419 0.0375 0.04112 1.13% FillPatchIterator::Initialize 41 0.02841 0.03467 0.03731 1.02% Gravity::interpolate_monopole_grav() 21 0.02782 0.02865 0.02966 0.81% Castro::construct_new_gravity_source() 10 0.02339 0.02603 0.02916 0.80% Castro::computeTemp() 63 0.01794 0.02003 0.0207 0.57% Castro::initialize_do_advance() 10 0.01174 0.01755 0.0197 0.54% VisMF::Write(FabArray) 2 0.01447 0.01513 0.01791 0.49% Castro::initialize_advance() 10 0.009662 0.01201 0.0148 0.41% FabArray::Saxpy() 20 0.0136 0.01406 0.01444 0.40% FabArray::setDomainBndry() 41 0.007664 0.01054 0.0118 0.32% MultiFab::contains_nan() 20 0.01009 0.01077 0.01132 0.31% Castro::construct_old_gravity_source() 10 0.007292 0.0103 0.01115 0.31% Castro::initMFs() 1 0.007062 0.007508 0.008062 0.22% StateData::define() 4 0.005789 0.006145 0.006483 0.18% main() 1 0.005249 0.005904 0.00644 0.18% Castro::construct_new_source() 50 0.005699 0.006182 0.006336 0.17% Castro::enforce_min_density() 62 0.006003 0.006077 0.006243 0.17% Gravity::get_new_grav_vector() 11 0.003069 0.004216 0.005647 0.15% Castro::swap_state_time_levels() 10 0.003779 0.004709 0.005367 0.15% Gravity::get_old_grav_vector() 10 0.001827 0.002451 0.002833 0.08% Amr::coarseTimeStep() 10 0.001897 0.002124 0.002367 0.06% Castro::finalize_do_advance() 10 0.0005677 0.001557 0.001961 0.05% Castro::buildMetrics() 1 0.001647 0.001762 0.001874 0.05% Castro::expand_state() 10 0.0005802 0.0007569 0.0008362 0.02% Amr::InitAmr() 1 0.0002764 0.0003122 0.000467 0.01% Amr::timeStep() 10 0.0001662 0.0002411 0.0003807 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002889 0.0003019 0.0003378 0.01% DistributionMapping::LeastUsedCPUs() 1 8.309e-06 0.0001855 0.0002233 0.01% Castro::clean_state() 62 0.0001463 0.0001565 0.0001722 0.00% StateDataPhysBCFunct::() 41 9.756e-05 0.000107 0.0001253 0.00% Castro::finalize_advance() 10 8.79e-05 9.708e-05 0.0001162 0.00% Amr::writeSmallPlotFile() 1 3.186e-05 7.228e-05 0.0001092 0.00% Castro::Castro() 1 6.271e-05 7.717e-05 9.88e-05 0.00% Castro::enforce_consistent_e() 1 8.42e-05 8.945e-05 9.872e-05 0.00% Castro::construct_old_source() 50 5.27e-05 6.887e-05 8.533e-05 0.00% Amr::FinalizeInit() 1 3.873e-06 1.465e-05 8.366e-05 0.00% FabArray::ParallelCopy() 41 6.536e-05 7.225e-05 7.807e-05 0.00% FabArrayBase::getCPC() 41 4.102e-05 5.638e-05 7.655e-05 0.00% Castro::do_new_sources() 10 5.483e-05 6.127e-05 7.565e-05 0.00% FillPatchSingleLevel 41 6.143e-05 6.457e-05 7.302e-05 0.00% Castro::do_old_sources() 10 5.158e-05 5.75e-05 6.444e-05 0.00% Castro::subcycle_advance_ctu() 10 3.704e-05 4.478e-05 6.2e-05 0.00% Castro::advance() 10 3.563e-05 4.13e-05 5.504e-05 0.00% Castro::construct_new_gravity() 10 3.408e-05 4.005e-05 5.02e-05 0.00% Castro::apply_source_to_state() 20 3.952e-05 4.302e-05 4.702e-05 0.00% Castro::construct_old_gravity() 10 3.522e-05 3.972e-05 4.632e-05 0.00% Castro::computeNewDt() 9 8.058e-06 1.321e-05 4.45e-05 0.00% Amr::defBaseLevel() 1 1.643e-05 2.453e-05 3.718e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.486e-05 2.588e-05 3.496e-05 0.00% Castro::enforce_speed_limit() 62 2.612e-05 2.866e-05 3.216e-05 0.00% FabArrayBase::CPC::define() 2 2.081e-05 2.419e-05 2.847e-05 0.00% Castro::check_for_nan() 20 2.002e-05 2.24e-05 2.429e-05 0.00% Castro::post_timestep() 10 1.572e-05 1.831e-05 2.295e-05 0.00% Gravity::swapTimeLevels() 10 1.002e-05 1.276e-05 1.647e-05 0.00% Gravity::set_mass_offset() 10 9.652e-06 1.095e-05 1.303e-05 0.00% Castro::create_source_corrector() 10 8.588e-06 9.629e-06 1.143e-05 0.00% Castro::FluxRegCrseInit 10 8.08e-06 9.365e-06 1.052e-05 0.00% Amr::initSubcycle() 1 8.593e-06 9.687e-06 1.02e-05 0.00% Castro::post_init() 1 2.684e-06 4.522e-06 9.57e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.687e-06 4.951e-06 6.956e-06 0.00% Castro::retry_advance_ctu() 10 4.675e-06 5.55e-06 6.144e-06 0.00% Amr::InitializeInit() 1 1.911e-06 2.685e-06 5.703e-06 0.00% Castro::computeInitialDt() 2 3.509e-06 4.186e-06 5.2e-06 0.00% Castro::post_regrid() 1 1.988e-06 3.25e-06 4.51e-06 0.00% Amr::init() 1 1.896e-06 2.457e-06 3.751e-06 0.00% Castro::FluxRegFineAdd() 10 2.034e-06 2.284e-06 2.464e-06 0.00% Amr::initialInit() 1 1.104e-06 1.378e-06 1.658e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.019e-06 1.165e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.644 3.644 3.645 100.00% Amr::coarseTimeStep() 10 3.373 3.373 3.373 92.53% Amr::timeStep() 10 3.36 3.361 3.361 92.21% Castro::advance() 10 3.344 3.344 3.345 91.77% Castro::subcycle_advance_ctu() 10 3.26 3.266 3.27 89.71% Castro::do_advance_ctu() 10 3.26 3.266 3.27 89.71% Castro::construct_ctu_hydro_source() 10 2.284 2.37 2.408 66.07% Gravity::make_radial_gravity() 21 0.3406 0.3496 0.3586 9.84% Gravity::get_new_grav_vector() 11 0.2251 0.2271 0.2286 6.27% Castro::construct_old_gravity() 10 0.1995 0.2063 0.2132 5.85% Gravity::get_old_grav_vector() 10 0.1987 0.2056 0.2125 5.83% Castro::construct_new_gravity() 10 0.1979 0.1992 0.2002 5.49% Amr::init() 1 0.1927 0.1929 0.1929 5.29% FillPatchIterator::Initialize 41 0.1576 0.1701 0.1808 4.96% Amr::initialInit() 1 0.1754 0.1756 0.1758 4.82% Castro::initialize_do_advance() 10 0.1519 0.1632 0.1741 4.78% Amr::InitializeInit() 1 0.06183 0.104 0.144 3.95% Amr::defBaseLevel() 1 0.06182 0.104 0.144 3.95% FillPatchSingleLevel 41 0.114 0.1249 0.1417 3.89% Castro::expand_state() 10 0.1032 0.115 0.1263 3.47% Castro::initData() 1 0.04463 0.08598 0.1249 3.43% Castro::clean_state() 62 0.1148 0.1178 0.1197 3.28% Castro::estTimeStep() 21 0.03059 0.07001 0.1168 3.20% Amr::FinalizeInit() 1 0.03175 0.07157 0.1138 3.12% FabArray::ParallelCopy() 41 0.07674 0.08719 0.106 2.91% Amr::writePlotFile() 2 0.08966 0.08987 0.09013 2.47% Castro::computeInitialDt() 2 0.002193 0.04223 0.08444 2.32% Castro::initialize_advance() 10 0.07147 0.0751 0.0812 2.23% amrex::Copy() 193 0.06207 0.07207 0.08061 2.21% FabArray::setVal() 143 0.06576 0.07147 0.08039 2.21% Castro::do_new_sources() 10 0.06134 0.06665 0.07463 2.05% Castro::computeTemp() 63 0.06772 0.07066 0.07196 1.97% FabArray::ParallelCopy_finish() 41 0.03308 0.04529 0.06933 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04919 0.05062 0.05141 1.41% Castro::reset_internal_energy(Fab) 1008 0.0489 0.05032 0.0511 1.40% Castro::do_old_sources() 10 0.04122 0.0454 0.04635 1.27% FabArray::ParallelCopy_nowait() 41 0.03661 0.04183 0.04397 1.21% Castro::normalize_species() 62 0.04104 0.04192 0.0426 1.17% StateDataPhysBCFunct::() 41 0.0343 0.03761 0.04123 1.13% StateData::FillBoundary(geom) 41 0.03419 0.0375 0.04112 1.13% Castro::construct_new_source() 50 0.02962 0.03221 0.03544 0.97% Gravity::interpolate_monopole_grav() 21 0.02782 0.02865 0.02966 0.81% Castro::post_init() 1 0.0286 0.02882 0.02919 0.80% Castro::construct_new_gravity_source() 10 0.02339 0.02603 0.02916 0.80% VisMF::Write(FabArray) 2 0.01447 0.01513 0.01791 0.49% Castro::post_timestep() 10 0.01573 0.01609 0.01682 0.46% Castro::apply_source_to_state() 20 0.01365 0.0141 0.01448 0.40% FabArray::Saxpy() 20 0.0136 0.01406 0.01444 0.40% Castro::Castro() 1 0.01081 0.01162 0.01236 0.34% FabArray::setDomainBndry() 41 0.007664 0.01054 0.0118 0.32% Castro::check_for_nan() 20 0.01011 0.01079 0.01134 0.31% MultiFab::contains_nan() 20 0.01009 0.01077 0.01132 0.31% Castro::construct_old_source() 50 0.007345 0.01036 0.01123 0.31% Castro::construct_old_gravity_source() 10 0.007292 0.0103 0.01115 0.31% Castro::computeNewDt() 9 0.008589 0.008627 0.008637 0.24% Castro::initMFs() 1 0.007062 0.007508 0.008062 0.22% AmrLevel::AmrLevel(dm) 1 0.005807 0.006171 0.006518 0.18% StateData::define() 4 0.005789 0.006145 0.006483 0.18% Castro::enforce_min_density() 62 0.006003 0.006077 0.006243 0.17% Castro::swap_state_time_levels() 10 0.003779 0.004709 0.005367 0.15% Castro::finalize_advance() 10 0.002972 0.003361 0.003767 0.10% Castro::buildMetrics() 1 0.001775 0.0019 0.002023 0.06% Castro::post_regrid() 1 0.00156 0.001721 0.001977 0.05% Castro::finalize_do_advance() 10 0.0005677 0.001557 0.001961 0.05% Amr::InitAmr() 1 0.0002853 0.0003219 0.0004772 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.35e-05 0.0001915 0.0002311 0.01% DistributionMapping::LeastUsedCPUs() 1 8.309e-06 0.0001855 0.0002233 0.01% Amr::writeSmallPlotFile() 1 3.186e-05 7.228e-05 0.0001092 0.00% FabArrayBase::getCPC() 41 6.445e-05 8.057e-05 0.000103 0.00% Castro::enforce_consistent_e() 1 8.42e-05 8.945e-05 9.872e-05 0.00% Castro::enforce_speed_limit() 62 2.612e-05 2.866e-05 3.216e-05 0.00% FabArrayBase::CPC::define() 2 2.081e-05 2.419e-05 2.847e-05 0.00% Gravity::swapTimeLevels() 10 1.002e-05 1.276e-05 1.647e-05 0.00% Gravity::set_mass_offset() 10 9.652e-06 1.095e-05 1.303e-05 0.00% Castro::create_source_corrector() 10 8.588e-06 9.629e-06 1.143e-05 0.00% Castro::FluxRegCrseInit 10 8.08e-06 9.365e-06 1.052e-05 0.00% Amr::initSubcycle() 1 8.593e-06 9.687e-06 1.02e-05 0.00% Castro::retry_advance_ctu() 10 4.675e-06 5.55e-06 6.144e-06 0.00% Castro::FluxRegFineAdd() 10 2.034e-06 2.284e-06 2.464e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.019e-06 1.165e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-29-g225c605680e8) finalized