MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-29-g225c605680e8) initialized Starting run at 06:46:52 UTC on 2023-01-31. Successfully read inputs file ... Castro git describe: 23.01-24-g165eb8c75 AMReX git describe: 23.01-29-g225c60568 Microphysics git describe: 23.01-9-ga3ac00ba reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01651681 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368347302 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35735917 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335058676 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334632397 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362606654 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342084357 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316919781 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314996567 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315079084 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314668598 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010201785 seconds Ending run at 06:46:56 UTC on 2023-01-31. Run time = 3.562996429 Run time without initialization = 3.379138788 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.562 ... 3.563 ... 3.563 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2589 2.3640 2.4052 67.50% Gravity::make_radial_gravity() 21 0.3236 0.3383 0.3582 10.05% Castro::do_advance_ctu() 10 0.0437 0.08577 0.1935 5.43% Castro::estTimeStep() 21 0.02356 0.06608 0.1149 3.23% Castro::initData() 1 0.03859 0.07957 0.1146 3.22% FabArray::setVal() 143 0.06446 0.07345 0.08768 2.46% amrex::Copy() 193 0.06299 0.0735 0.08273 2.32% FabArray::ParallelCopy_finish() 41 0.0339 0.05066 0.07007 1.97% Castro::reset_internal_energy(Fab) 1008 0.04683 0.04995 0.05302 1.49% Castro::normalize_species() 62 0.04133 0.04215 0.04354 1.22% FabArray::ParallelCopy_nowait() 41 0.03571 0.04192 0.04348 1.22% StateData::FillBoundary(geom) 41 0.03238 0.03568 0.03764 1.06% FillPatchIterator::Initialize 41 0.02887 0.03451 0.03663 1.03% Castro::construct_new_gravity_source() 10 0.02337 0.02663 0.03088 0.87% Gravity::interpolate_monopole_grav() 21 0.02821 0.02849 0.02911 0.82% Castro::computeTemp() 63 0.01717 0.01963 0.02123 0.60% Castro::initialize_do_advance() 10 0.0118 0.01794 0.02105 0.59% VisMF::Write(FabArray) 2 0.01343 0.01425 0.01682 0.47% FabArray::Saxpy() 20 0.01234 0.01396 0.01499 0.42% Castro::initialize_advance() 10 0.009685 0.0121 0.01455 0.41% MultiFab::contains_nan() 20 0.01102 0.0119 0.01311 0.37% FabArray::setDomainBndry() 41 0.007757 0.01076 0.01213 0.34% Castro::construct_old_gravity_source() 10 0.007689 0.01059 0.01129 0.32% Amr::writePlotFile() 2 0.006964 0.009645 0.01069 0.30% Castro::initMFs() 1 0.006726 0.007184 0.008499 0.24% Castro::enforce_min_density() 62 0.005743 0.006193 0.006603 0.19% main() 1 0.005373 0.005885 0.006435 0.18% Castro::construct_new_source() 50 0.005716 0.006201 0.006383 0.18% StateData::define() 4 0.005651 0.005847 0.00638 0.18% Gravity::get_new_grav_vector() 11 0.003016 0.004006 0.005783 0.16% Castro::swap_state_time_levels() 10 0.002602 0.004523 0.00525 0.15% Amr::coarseTimeStep() 10 0.0008144 0.00258 0.003939 0.11% Gravity::get_old_grav_vector() 10 0.001742 0.002461 0.002937 0.08% Castro::buildMetrics() 1 0.001578 0.001645 0.001842 0.05% Castro::finalize_do_advance() 10 0.0006514 0.001413 0.001694 0.05% Castro::expand_state() 10 0.0006299 0.0008072 0.001064 0.03% Amr::timeStep() 10 0.0001697 0.0002457 0.0004794 0.01% Amr::InitAmr() 1 0.0002703 0.0003105 0.0004048 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002806 0.0002946 0.0003069 0.01% Castro::clean_state() 62 0.0001613 0.000189 0.0002265 0.01% DistributionMapping::LeastUsedCPUs() 1 8.469e-06 0.000125 0.0001794 0.01% Amr::writeSmallPlotFile() 1 5.334e-05 8.616e-05 0.0001148 0.00% StateDataPhysBCFunct::() 41 9.076e-05 0.0001009 0.0001096 0.00% Castro::enforce_consistent_e() 1 7.534e-05 8.965e-05 0.0001087 0.00% Castro::finalize_advance() 10 8.501e-05 9.253e-05 0.0001041 0.00% Amr::FinalizeInit() 1 4.459e-06 1.658e-05 9.886e-05 0.00% Castro::Castro() 1 5.777e-05 6.754e-05 8.75e-05 0.00% FabArrayBase::getCPC() 41 5.095e-05 6.256e-05 8.36e-05 0.00% Castro::construct_old_source() 50 5.268e-05 6.565e-05 8.17e-05 0.00% FabArray::ParallelCopy() 41 6.659e-05 7.114e-05 7.879e-05 0.00% Castro::do_new_sources() 10 5.09e-05 5.984e-05 7.439e-05 0.00% FillPatchSingleLevel 41 6.094e-05 6.677e-05 7.343e-05 0.00% Castro::do_old_sources() 10 4.537e-05 5.804e-05 7.123e-05 0.00% Castro::advance() 10 3.748e-05 4.765e-05 7.093e-05 0.00% Castro::subcycle_advance_ctu() 10 3.8e-05 4.819e-05 6.821e-05 0.00% Castro::apply_source_to_state() 20 3.883e-05 4.492e-05 5.265e-05 0.00% Castro::construct_new_gravity() 10 3.373e-05 3.951e-05 4.754e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.798e-05 2.928e-05 4.164e-05 0.00% Castro::construct_old_gravity() 10 3.517e-05 3.798e-05 4.089e-05 0.00% Castro::post_timestep() 10 1.704e-05 2.425e-05 3.478e-05 0.00% Castro::enforce_speed_limit() 62 2.614e-05 2.884e-05 3.235e-05 0.00% FabArrayBase::CPC::define() 2 2.097e-05 2.5e-05 2.907e-05 0.00% Castro::check_for_nan() 20 2.025e-05 2.255e-05 2.57e-05 0.00% Amr::defBaseLevel() 1 1.663e-05 1.902e-05 2.38e-05 0.00% Gravity::swapTimeLevels() 10 1.019e-05 1.341e-05 1.535e-05 0.00% Castro::post_init() 1 2.741e-06 4.566e-06 1.277e-05 0.00% Castro::computeNewDt() 9 8.002e-06 9.671e-06 1.242e-05 0.00% Castro::create_source_corrector() 10 8.033e-06 9.897e-06 1.178e-05 0.00% Gravity::set_mass_offset() 10 1.003e-05 1.057e-05 1.176e-05 0.00% Castro::FluxRegCrseInit 10 7.258e-06 8.483e-06 1.116e-05 0.00% Amr::initSubcycle() 1 8.589e-06 9.453e-06 1.062e-05 0.00% Castro::retry_advance_ctu() 10 4.815e-06 5.587e-06 6.42e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.697e-06 4.442e-06 5.923e-06 0.00% Castro::computeInitialDt() 2 3.231e-06 4.413e-06 5.6e-06 0.00% Amr::InitializeInit() 1 1.867e-06 2.692e-06 4.522e-06 0.00% Castro::post_regrid() 1 2.395e-06 3.219e-06 4.308e-06 0.00% Castro::FluxRegFineAdd() 10 1.926e-06 2.239e-06 3.185e-06 0.00% Amr::init() 1 1.883e-06 2.431e-06 2.761e-06 0.00% Amr::initialInit() 1 1.209e-06 1.551e-06 2.095e-06 0.00% DistributionMapping::Distribute() 1 8.1e-07 9.802e-07 1.131e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.562 3.563 3.563 100.00% Amr::coarseTimeStep() 10 3.363 3.363 3.363 94.37% Amr::timeStep() 10 3.349 3.35 3.352 94.08% Castro::advance() 10 3.333 3.334 3.335 93.61% Castro::subcycle_advance_ctu() 10 3.245 3.253 3.26 91.50% Castro::do_advance_ctu() 10 3.245 3.253 3.26 91.50% Castro::construct_ctu_hydro_source() 10 2.259 2.364 2.405 67.50% Gravity::make_radial_gravity() 21 0.3398 0.355 0.3728 10.46% Gravity::get_new_grav_vector() 11 0.2274 0.2314 0.2339 6.56% Castro::construct_old_gravity() 10 0.2 0.2073 0.222 6.23% Gravity::get_old_grav_vector() 10 0.1992 0.2066 0.2214 6.21% Castro::construct_new_gravity() 10 0.2007 0.2037 0.2056 5.77% FillPatchIterator::Initialize 41 0.1607 0.1738 0.1848 5.19% Amr::init() 1 0.1833 0.1835 0.1835 5.15% Castro::initialize_do_advance() 10 0.1502 0.168 0.1773 4.98% Amr::initialInit() 1 0.1667 0.1669 0.1674 4.70% FillPatchSingleLevel 41 0.1134 0.1286 0.1385 3.89% Amr::InitializeInit() 1 0.05955 0.1009 0.1354 3.80% Amr::defBaseLevel() 1 0.05955 0.1009 0.1354 3.80% Castro::expand_state() 10 0.1091 0.1197 0.1307 3.67% Castro::clean_state() 62 0.1112 0.1175 0.1236 3.47% Castro::initData() 1 0.04263 0.08363 0.1188 3.33% Castro::estTimeStep() 21 0.02356 0.06608 0.1149 3.23% Amr::FinalizeInit() 1 0.03161 0.06595 0.1074 3.01% FabArray::ParallelCopy() 41 0.07751 0.09274 0.1059 2.97% FabArray::setVal() 143 0.06446 0.07345 0.08768 2.46% Castro::initialize_advance() 10 0.07026 0.07703 0.08584 2.41% amrex::Copy() 193 0.06299 0.0735 0.08273 2.32% Castro::computeInitialDt() 2 0.002167 0.03676 0.07821 2.19% Castro::do_new_sources() 10 0.05952 0.06686 0.07673 2.15% Castro::computeTemp() 63 0.06428 0.06987 0.07416 2.08% FabArray::ParallelCopy_finish() 41 0.0339 0.05066 0.07007 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04711 0.05024 0.05333 1.50% Castro::reset_internal_energy(Fab) 1008 0.04683 0.04995 0.05302 1.49% Castro::do_old_sources() 10 0.04042 0.04562 0.04743 1.33% FabArray::ParallelCopy_nowait() 41 0.03579 0.042 0.04358 1.22% Castro::normalize_species() 62 0.04133 0.04215 0.04354 1.22% StateDataPhysBCFunct::() 41 0.03248 0.03578 0.03775 1.06% StateData::FillBoundary(geom) 41 0.03238 0.03568 0.03764 1.06% Castro::construct_new_source() 50 0.02946 0.03284 0.03726 1.05% Castro::construct_new_gravity_source() 10 0.02337 0.02663 0.03088 0.87% Gravity::interpolate_monopole_grav() 21 0.02821 0.02849 0.02911 0.82% Castro::post_init() 1 0.02849 0.02874 0.02905 0.82% Amr::writePlotFile() 2 0.0264 0.02685 0.02709 0.76% VisMF::Write(FabArray) 2 0.01343 0.01425 0.01682 0.47% Castro::post_timestep() 10 0.01516 0.01588 0.01652 0.46% Castro::apply_source_to_state() 20 0.01238 0.01401 0.01503 0.42% FabArray::Saxpy() 20 0.01234 0.01396 0.01499 0.42% Castro::check_for_nan() 20 0.01104 0.01192 0.01314 0.37% MultiFab::contains_nan() 20 0.01102 0.0119 0.01311 0.37% Castro::Castro() 1 0.01092 0.01128 0.01214 0.34% FabArray::setDomainBndry() 41 0.007757 0.01076 0.01213 0.34% Castro::construct_old_source() 50 0.007742 0.01065 0.01136 0.32% Castro::construct_old_gravity_source() 10 0.007689 0.01059 0.01129 0.32% Castro::initMFs() 1 0.006726 0.007184 0.008499 0.24% Castro::computeNewDt() 9 0.008466 0.008481 0.008492 0.24% Castro::enforce_min_density() 62 0.005743 0.006193 0.006603 0.19% AmrLevel::AmrLevel(dm) 1 0.005669 0.005876 0.006422 0.18% StateData::define() 4 0.005651 0.005847 0.00638 0.18% Castro::swap_state_time_levels() 10 0.002602 0.004523 0.00525 0.15% Castro::finalize_advance() 10 0.002952 0.003654 0.004598 0.13% Castro::buildMetrics() 1 0.001712 0.001793 0.002017 0.06% Castro::post_regrid() 1 0.001551 0.001641 0.00187 0.05% Castro::finalize_do_advance() 10 0.0006514 0.001413 0.001694 0.05% Amr::InitAmr() 1 0.000279 0.00032 0.0004137 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.345e-05 0.0001305 0.0001864 0.01% DistributionMapping::LeastUsedCPUs() 1 8.469e-06 0.000125 0.0001794 0.01% Amr::writeSmallPlotFile() 1 5.334e-05 8.616e-05 0.0001148 0.00% FabArrayBase::getCPC() 41 7.638e-05 8.756e-05 0.0001112 0.00% Castro::enforce_consistent_e() 1 7.534e-05 8.965e-05 0.0001087 0.00% Castro::enforce_speed_limit() 62 2.614e-05 2.884e-05 3.235e-05 0.00% FabArrayBase::CPC::define() 2 2.097e-05 2.5e-05 2.907e-05 0.00% Gravity::swapTimeLevels() 10 1.019e-05 1.341e-05 1.535e-05 0.00% Castro::create_source_corrector() 10 8.033e-06 9.897e-06 1.178e-05 0.00% Gravity::set_mass_offset() 10 1.003e-05 1.057e-05 1.176e-05 0.00% Castro::FluxRegCrseInit 10 7.258e-06 8.483e-06 1.116e-05 0.00% Amr::initSubcycle() 1 8.589e-06 9.453e-06 1.062e-05 0.00% Castro::retry_advance_ctu() 10 4.815e-06 5.587e-06 6.42e-06 0.00% Castro::FluxRegFineAdd() 10 1.926e-06 2.239e-06 3.185e-06 0.00% DistributionMapping::Distribute() 1 8.1e-07 9.802e-07 1.131e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-29-g225c605680e8) finalized