MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.01-29-g225c605680e8) initialized Starting run at 06:46:23 UTC on 2023-02-01. Successfully read inputs file ... Castro git describe: 23.01-26-g5599e7cca AMReX git describe: 23.01-29-g225c60568 Microphysics git describe: 23.01-10-g0858a6ed reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016274931 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357717909 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341896048 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335203701 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334636693 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354953201 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339845704 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.322069933 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318112382 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317841396 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316537004 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010589421 seconds Ending run at 06:46:26 UTC on 2023-02-01. Run time = 3.542715915 Run time without initialization = 3.356429362 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.542 ... 3.543 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2915 2.3638 2.4125 68.09% Gravity::make_radial_gravity() 21 0.3158 0.3229 0.3399 9.59% Castro::do_advance_ctu() 10 0.01538 0.06455 0.1405 3.97% Castro::estTimeStep() 21 0.04083 0.07185 0.1178 3.33% Castro::initData() 1 0.03956 0.07969 0.1175 3.32% FabArray::setVal() 143 0.06584 0.07455 0.08669 2.45% amrex::Copy() 193 0.06298 0.07431 0.08307 2.34% FabArray::ParallelCopy_finish() 41 0.03726 0.05643 0.07536 2.13% Castro::reset_internal_energy(Fab) 1008 0.04865 0.04968 0.05072 1.43% FabArray::ParallelCopy_nowait() 41 0.03585 0.04174 0.044 1.24% Castro::normalize_species() 62 0.04098 0.04227 0.04327 1.22% StateData::FillBoundary(geom) 41 0.03514 0.03733 0.0393 1.11% FillPatchIterator::Initialize 41 0.0288 0.03528 0.03857 1.09% Castro::construct_new_gravity_source() 10 0.02357 0.02721 0.03214 0.91% Gravity::interpolate_monopole_grav() 21 0.02804 0.02918 0.03056 0.86% Castro::initialize_do_advance() 10 0.01194 0.01791 0.02139 0.60% Castro::computeTemp() 63 0.01966 0.02009 0.02042 0.58% VisMF::Write(FabArray) 2 0.01399 0.01501 0.01778 0.50% FabArray::Saxpy() 20 0.01253 0.01431 0.01587 0.45% Castro::initialize_advance() 10 0.009505 0.0119 0.01426 0.40% FabArray::setDomainBndry() 41 0.007807 0.01072 0.01203 0.34% MultiFab::contains_nan() 20 0.01013 0.01076 0.01164 0.33% Castro::construct_old_gravity_source() 10 0.007639 0.01037 0.01089 0.31% Amr::writePlotFile() 2 0.006391 0.009218 0.01042 0.29% Castro::initMFs() 1 0.006943 0.007378 0.00853 0.24% Castro::construct_new_source() 50 0.005892 0.006336 0.006554 0.18% StateData::define() 4 0.005726 0.005952 0.006496 0.18% Castro::enforce_min_density() 62 0.005696 0.0061 0.006408 0.18% main() 1 0.005066 0.005969 0.006337 0.18% Castro::swap_state_time_levels() 10 0.003323 0.004344 0.004655 0.13% Gravity::get_new_grav_vector() 11 0.003093 0.003808 0.004223 0.12% Amr::coarseTimeStep() 10 0.001346 0.002465 0.003619 0.10% Gravity::get_old_grav_vector() 10 0.001856 0.002506 0.002824 0.08% Castro::finalize_do_advance() 10 0.0005643 0.001637 0.002043 0.06% Castro::buildMetrics() 1 0.001623 0.001701 0.001859 0.05% Castro::expand_state() 10 0.0006404 0.0008022 0.0009442 0.03% Amr::timeStep() 10 0.0001707 0.0002263 0.0004045 0.01% Amr::InitAmr() 1 0.0002663 0.0002911 0.0004024 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002833 0.0002968 0.0003222 0.01% Castro::clean_state() 62 0.0001365 0.0001508 0.0001759 0.00% DistributionMapping::LeastUsedCPUs() 1 7.372e-06 0.000124 0.0001491 0.00% StateDataPhysBCFunct::() 41 8.518e-05 0.0001054 0.0001242 0.00% Castro::enforce_consistent_e() 1 8.584e-05 9.328e-05 0.0001081 0.00% Castro::finalize_advance() 10 8.586e-05 9.379e-05 0.0001028 0.00% Castro::Castro() 1 5.893e-05 7.373e-05 9.957e-05 0.00% FabArray::ParallelCopy() 41 6.712e-05 7.876e-05 8.903e-05 0.00% Castro::construct_old_source() 50 5.628e-05 6.753e-05 8.505e-05 0.00% FillPatchSingleLevel 41 5.833e-05 6.772e-05 7.941e-05 0.00% Amr::writeSmallPlotFile() 1 2.55e-05 6.396e-05 7.737e-05 0.00% Amr::FinalizeInit() 1 4.455e-06 1.374e-05 7.537e-05 0.00% FabArrayBase::getCPC() 41 4.135e-05 5.568e-05 7.467e-05 0.00% Castro::do_old_sources() 10 5.1e-05 5.929e-05 6.913e-05 0.00% Castro::do_new_sources() 10 5.115e-05 6.035e-05 6.65e-05 0.00% Castro::apply_source_to_state() 20 3.915e-05 4.706e-05 5.192e-05 0.00% Castro::subcycle_advance_ctu() 10 3.897e-05 4.496e-05 5.151e-05 0.00% Castro::construct_new_gravity() 10 3.489e-05 4.036e-05 4.705e-05 0.00% Castro::construct_old_gravity() 10 3.459e-05 4.146e-05 4.601e-05 0.00% Castro::advance() 10 3.534e-05 4.021e-05 4.593e-05 0.00% Castro::post_timestep() 10 1.688e-05 2.941e-05 4.529e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.834e-05 2.792e-05 3.826e-05 0.00% Castro::enforce_speed_limit() 62 2.576e-05 2.915e-05 3.418e-05 0.00% FabArrayBase::CPC::define() 2 2.238e-05 2.573e-05 3.038e-05 0.00% Castro::check_for_nan() 20 2.122e-05 2.253e-05 2.55e-05 0.00% Amr::defBaseLevel() 1 1.615e-05 2.001e-05 2.246e-05 0.00% Castro::FluxRegCrseInit 10 6.737e-06 9.26e-06 1.443e-05 0.00% Gravity::swapTimeLevels() 10 8.854e-06 1.128e-05 1.397e-05 0.00% Gravity::set_mass_offset() 10 9.049e-06 1.06e-05 1.227e-05 0.00% Castro::create_source_corrector() 10 8.123e-06 9.401e-06 1.116e-05 0.00% Amr::initSubcycle() 1 8.606e-06 9.308e-06 1.021e-05 0.00% Castro::computeNewDt() 9 7.766e-06 8.669e-06 9.888e-06 0.00% Castro::post_init() 1 3.556e-06 4.625e-06 8.804e-06 0.00% Amr::initialInit() 1 1.166e-06 2.316e-06 8.114e-06 0.00% Amr::init() 1 1.892e-06 2.792e-06 6.28e-06 0.00% Castro::retry_advance_ctu() 10 4.406e-06 5.502e-06 6.056e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.497e-06 4.234e-06 5.655e-06 0.00% Amr::InitializeInit() 1 1.917e-06 2.419e-06 4.809e-06 0.00% Castro::computeInitialDt() 2 3.53e-06 4.136e-06 4.766e-06 0.00% Castro::post_regrid() 1 2.138e-06 3.201e-06 4.391e-06 0.00% Castro::FluxRegFineAdd() 10 1.677e-06 2.243e-06 2.6e-06 0.00% DistributionMapping::Distribute() 1 8.73e-07 9.704e-07 1.077e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.542 3.543 100.00% Amr::coarseTimeStep() 10 3.34 3.34 3.34 94.27% Amr::timeStep() 10 3.326 3.328 3.329 93.95% Castro::advance() 10 3.31 3.311 3.312 93.49% Castro::subcycle_advance_ctu() 10 3.222 3.23 3.237 91.36% Castro::do_advance_ctu() 10 3.222 3.23 3.237 91.36% Castro::construct_ctu_hydro_source() 10 2.292 2.364 2.412 68.09% Gravity::make_radial_gravity() 21 0.3336 0.3405 0.354 9.99% Gravity::get_new_grav_vector() 11 0.2265 0.2273 0.2282 6.44% Castro::construct_old_gravity() 10 0.1953 0.2016 0.2117 5.98% Gravity::get_old_grav_vector() 10 0.1946 0.2008 0.211 5.96% Castro::construct_new_gravity() 10 0.2009 0.2017 0.2026 5.72% FillPatchIterator::Initialize 41 0.1673 0.1818 0.1942 5.48% Amr::init() 1 0.1857 0.1859 0.1859 5.25% Castro::initialize_do_advance() 10 0.1555 0.1711 0.1847 5.21% Amr::initialInit() 1 0.1692 0.1694 0.1695 4.79% FillPatchSingleLevel 41 0.1192 0.1358 0.1486 4.19% Amr::InitializeInit() 1 0.06125 0.1015 0.1403 3.96% Amr::defBaseLevel() 1 0.06125 0.1015 0.1403 3.96% Castro::expand_state() 10 0.111 0.1229 0.1361 3.84% Castro::initData() 1 0.0436 0.08382 0.1213 3.42% Castro::clean_state() 62 0.1146 0.1176 0.1192 3.36% Castro::estTimeStep() 21 0.04083 0.07185 0.1178 3.33% FabArray::ParallelCopy() 41 0.08141 0.09833 0.1114 3.14% Amr::FinalizeInit() 1 0.02916 0.06792 0.1081 3.05% FabArray::setVal() 143 0.06584 0.07455 0.08669 2.45% Castro::initialize_advance() 10 0.07091 0.07757 0.08558 2.42% amrex::Copy() 193 0.06298 0.07431 0.08307 2.34% Castro::computeInitialDt() 2 0.002055 0.04085 0.08108 2.29% Castro::do_new_sources() 10 0.06144 0.06876 0.07958 2.25% FabArray::ParallelCopy_finish() 41 0.03726 0.05643 0.07536 2.13% Castro::computeTemp() 63 0.06874 0.07006 0.07144 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04894 0.04997 0.05101 1.44% Castro::reset_internal_energy(Fab) 1008 0.04865 0.04968 0.05072 1.43% Castro::do_old_sources() 10 0.04032 0.04548 0.0465 1.31% FabArray::ParallelCopy_nowait() 41 0.03595 0.04182 0.04409 1.24% Castro::normalize_species() 62 0.04098 0.04227 0.04327 1.22% StateDataPhysBCFunct::() 41 0.03524 0.03744 0.03941 1.11% StateData::FillBoundary(geom) 41 0.03514 0.03733 0.0393 1.11% Castro::construct_new_source() 50 0.02979 0.03355 0.03864 1.09% Castro::construct_new_gravity_source() 10 0.02357 0.02721 0.03214 0.91% Gravity::interpolate_monopole_grav() 21 0.02804 0.02918 0.03056 0.86% Amr::writePlotFile() 2 0.02699 0.02713 0.02735 0.77% Castro::post_init() 1 0.02633 0.02646 0.02657 0.75% VisMF::Write(FabArray) 2 0.01399 0.01501 0.01778 0.50% Castro::post_timestep() 10 0.01591 0.01619 0.01638 0.46% Castro::apply_source_to_state() 20 0.01258 0.01436 0.01591 0.45% FabArray::Saxpy() 20 0.01253 0.01431 0.01587 0.45% Castro::Castro() 1 0.01113 0.01151 0.01235 0.35% FabArray::setDomainBndry() 41 0.007807 0.01072 0.01203 0.34% Castro::check_for_nan() 20 0.01015 0.01079 0.01166 0.33% MultiFab::contains_nan() 20 0.01013 0.01076 0.01164 0.33% Castro::construct_old_source() 50 0.007696 0.01043 0.01096 0.31% Castro::construct_old_gravity_source() 10 0.007639 0.01037 0.01089 0.31% Castro::computeNewDt() 9 0.008547 0.00856 0.00857 0.24% Castro::initMFs() 1 0.006943 0.007378 0.00853 0.24% AmrLevel::AmrLevel(dm) 1 0.005747 0.00598 0.006534 0.18% StateData::define() 4 0.005726 0.005952 0.006496 0.18% Castro::enforce_min_density() 62 0.005696 0.0061 0.006408 0.18% Castro::swap_state_time_levels() 10 0.003323 0.004344 0.004655 0.13% Castro::finalize_advance() 10 0.002907 0.00364 0.004524 0.13% Castro::finalize_do_advance() 10 0.0005643 0.001637 0.002043 0.06% Castro::buildMetrics() 1 0.001743 0.001834 0.002016 0.06% Castro::post_regrid() 1 0.001587 0.001668 0.001709 0.05% Amr::InitAmr() 1 0.0002749 0.0003004 0.0004114 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.187e-05 0.0001292 0.0001557 0.00% DistributionMapping::LeastUsedCPUs() 1 7.372e-06 0.000124 0.0001491 0.00% Castro::enforce_consistent_e() 1 8.584e-05 9.328e-05 0.0001081 0.00% FabArrayBase::getCPC() 41 7.173e-05 8.141e-05 9.961e-05 0.00% Amr::writeSmallPlotFile() 1 2.55e-05 6.396e-05 7.737e-05 0.00% Castro::enforce_speed_limit() 62 2.576e-05 2.915e-05 3.418e-05 0.00% FabArrayBase::CPC::define() 2 2.238e-05 2.573e-05 3.038e-05 0.00% Castro::FluxRegCrseInit 10 6.737e-06 9.26e-06 1.443e-05 0.00% Gravity::swapTimeLevels() 10 8.854e-06 1.128e-05 1.397e-05 0.00% Gravity::set_mass_offset() 10 9.049e-06 1.06e-05 1.227e-05 0.00% Castro::create_source_corrector() 10 8.123e-06 9.401e-06 1.116e-05 0.00% Amr::initSubcycle() 1 8.606e-06 9.308e-06 1.021e-05 0.00% Castro::retry_advance_ctu() 10 4.406e-06 5.502e-06 6.056e-06 0.00% Castro::FluxRegFineAdd() 10 1.677e-06 2.243e-06 2.6e-06 0.00% DistributionMapping::Distribute() 1 8.73e-07 9.704e-07 1.077e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.01-29-g225c605680e8) finalized