MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-6-g25fcdfc433ac) initialized Starting run at 06:47:08 UTC on 2023-02-03. Successfully read inputs file ... Castro git describe: 23.01-27-g39382f3e8 AMReX git describe: 23.02-6-g25fcdfc43 Microphysics git describe: 23.02-2-g0c85d6ac reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01500462 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358551105 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347350367 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329183917 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328929622 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357541105 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328857181 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311155322 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313054535 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31244785 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312396641 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010538395 seconds Ending run at 06:47:12 UTC on 2023-02-03. Run time = 3.54737591 Run time without initialization = 3.31717662 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.546 ... 3.547 ... 3.547 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2891 2.3431 2.3721 66.87% Gravity::make_radial_gravity() 21 0.3182 0.3274 0.3412 9.62% Castro::initData() 1 0.04003 0.08572 0.1551 4.37% Castro::estTimeStep() 21 0.02112 0.1043 0.1436 4.05% Castro::do_advance_ctu() 10 0.04662 0.07868 0.1366 3.85% amrex::Copy() 193 0.06062 0.07108 0.07818 2.20% FabArray::setVal() 143 0.06297 0.06822 0.07639 2.15% FabArray::ParallelCopy_finish() 41 0.03244 0.0455 0.0736 2.07% Castro::reset_internal_energy(Fab) 1008 0.04814 0.04963 0.05162 1.46% FabArray::ParallelCopy_nowait() 41 0.03619 0.04059 0.04245 1.20% Castro::normalize_species() 62 0.04049 0.04134 0.04232 1.19% StateData::FillBoundary(geom) 41 0.03369 0.03694 0.04014 1.13% FillPatchIterator::Initialize 41 0.02824 0.03285 0.03562 1.00% Castro::construct_new_gravity_source() 10 0.02302 0.02606 0.03028 0.85% Gravity::interpolate_monopole_grav() 21 0.02785 0.02834 0.02882 0.81% Castro::computeTemp() 63 0.01824 0.01951 0.02046 0.58% Castro::initialize_do_advance() 10 0.01187 0.01691 0.01922 0.54% VisMF::Write(FabArray) 2 0.0133 0.01408 0.01668 0.47% FabArray::Saxpy() 20 0.01227 0.01388 0.01464 0.41% Castro::initialize_advance() 10 0.00405 0.0101 0.01344 0.38% FabArray::setDomainBndry() 41 0.007674 0.01014 0.01167 0.33% MultiFab::contains_nan() 20 0.009878 0.01058 0.01151 0.32% Castro::construct_old_gravity_source() 10 0.007511 0.01018 0.01094 0.31% Amr::writePlotFile() 2 0.006343 0.009367 0.0109 0.31% Castro::initMFs() 1 0.00689 0.008043 0.01084 0.31% StateData::define() 4 0.005652 0.006447 0.008318 0.23% Castro::construct_new_source() 50 0.005851 0.006212 0.006501 0.18% main() 1 0.004968 0.005805 0.006433 0.18% Castro::enforce_min_density() 62 0.005694 0.005977 0.006343 0.18% Gravity::get_new_grav_vector() 11 0.003159 0.003759 0.005146 0.15% Castro::swap_state_time_levels() 10 0.00332 0.004368 0.004734 0.13% Amr::coarseTimeStep() 10 0.002021 0.002624 0.003541 0.10% Gravity::get_old_grav_vector() 10 0.001903 0.002334 0.002697 0.08% Castro::buildMetrics() 1 0.001614 0.001847 0.002385 0.07% Castro::finalize_do_advance() 10 0.0006729 0.001579 0.001958 0.06% Castro::expand_state() 10 0.0007018 0.0008258 0.000922 0.03% Amr::InitAmr() 1 0.0002698 0.00035 0.0005031 0.01% Amr::timeStep() 10 0.0001915 0.00026 0.000433 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002882 0.0003014 0.0003188 0.01% DistributionMapping::LeastUsedCPUs() 1 8.653e-06 0.0001815 0.0002634 0.01% Castro::clean_state() 62 0.000142 0.0001529 0.0001674 0.00% Castro::enforce_consistent_e() 1 8.125e-05 9.692e-05 0.0001419 0.00% Castro::finalize_advance() 10 9.44e-05 0.0001041 0.0001208 0.00% StateDataPhysBCFunct::() 41 9.539e-05 0.0001053 0.0001128 0.00% Castro::Castro() 1 5.439e-05 8.005e-05 9.781e-05 0.00% FabArray::ParallelCopy() 41 6.302e-05 7.445e-05 8.729e-05 0.00% Castro::subcycle_advance_ctu() 10 4.372e-05 5.17e-05 8.301e-05 0.00% Amr::writeSmallPlotFile() 1 2.486e-05 6.221e-05 7.772e-05 0.00% FabArrayBase::getCPC() 41 4.252e-05 5.87e-05 7.624e-05 0.00% Castro::construct_old_source() 50 5.188e-05 6.531e-05 7.415e-05 0.00% Amr::FinalizeInit() 1 4.283e-06 1.35e-05 7.299e-05 0.00% FillPatchSingleLevel 41 6.21e-05 6.495e-05 6.837e-05 0.00% Castro::do_new_sources() 10 5.663e-05 6.066e-05 6.832e-05 0.00% Castro::do_old_sources() 10 5.347e-05 5.919e-05 6.477e-05 0.00% Castro::apply_source_to_state() 20 3.871e-05 4.448e-05 5.412e-05 0.00% Castro::construct_new_gravity() 10 3.635e-05 4.21e-05 4.788e-05 0.00% Castro::advance() 10 3.52e-05 4.143e-05 4.618e-05 0.00% Gravity::set_mass_offset() 10 9.088e-06 1.439e-05 4.414e-05 0.00% Castro::construct_old_gravity() 10 3.682e-05 3.992e-05 4.383e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.538e-05 3.745e-05 0.00% Castro::post_timestep() 10 1.545e-05 2.056e-05 3.453e-05 0.00% Castro::enforce_speed_limit() 62 2.61e-05 2.922e-05 3.305e-05 0.00% Amr::defBaseLevel() 1 1.862e-05 2.331e-05 3.194e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.176e-05 2.692e-05 3.148e-05 0.00% Castro::check_for_nan() 20 1.965e-05 2.182e-05 2.46e-05 0.00% Amr::initSubcycle() 1 8.676e-06 1.104e-05 1.65e-05 0.00% Gravity::swapTimeLevels() 10 7.959e-06 1.065e-05 1.303e-05 0.00% Amr::init() 1 2.032e-06 3.486e-06 1.117e-05 0.00% Castro::computeNewDt() 9 7.805e-06 8.801e-06 1.039e-05 0.00% Castro::create_source_corrector() 10 7.976e-06 9.268e-06 1.001e-05 0.00% Castro::FluxRegCrseInit 10 7.751e-06 8.415e-06 9.339e-06 0.00% Castro::retry_advance_ctu() 10 4.872e-06 5.619e-06 6.542e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.46e-06 4.507e-06 6.49e-06 0.00% Castro::post_regrid() 1 2.419e-06 3.682e-06 6.153e-06 0.00% Castro::post_init() 1 2.838e-06 3.908e-06 5.074e-06 0.00% Castro::computeInitialDt() 2 3.269e-06 4.189e-06 5.001e-06 0.00% Amr::InitializeInit() 1 2e-06 2.734e-06 4.89e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.156e-06 2.615e-06 0.00% Amr::initialInit() 1 1.247e-06 1.514e-06 1.813e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.093e-06 1.313e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.546 3.547 3.547 100.00% Amr::coarseTimeStep() 10 3.3 3.3 3.3 93.03% Amr::timeStep() 10 3.287 3.288 3.289 92.71% Castro::advance() 10 3.272 3.272 3.273 92.25% Castro::subcycle_advance_ctu() 10 3.193 3.198 3.206 90.38% Castro::do_advance_ctu() 10 3.193 3.198 3.206 90.38% Castro::construct_ctu_hydro_source() 10 2.289 2.343 2.372 66.87% Gravity::make_radial_gravity() 21 0.3345 0.3438 0.3542 9.98% Amr::init() 1 0.2295 0.2297 0.2298 6.48% Gravity::get_new_grav_vector() 11 0.2231 0.2253 0.2266 6.39% Amr::initialInit() 1 0.2139 0.2142 0.2145 6.05% Castro::construct_old_gravity() 10 0.1948 0.2001 0.2096 5.91% Gravity::get_old_grav_vector() 10 0.1941 0.1994 0.2089 5.89% Castro::construct_new_gravity() 10 0.1964 0.198 0.199 5.61% Amr::InitializeInit() 1 0.06091 0.1087 0.1829 5.16% Amr::defBaseLevel() 1 0.06091 0.1087 0.1829 5.16% FillPatchIterator::Initialize 41 0.1504 0.1664 0.1809 5.10% Castro::initialize_do_advance() 10 0.1491 0.161 0.1702 4.80% Castro::initData() 1 0.04406 0.08994 0.1594 4.49% Amr::FinalizeInit() 1 0.03137 0.1055 0.1536 4.33% FillPatchSingleLevel 41 0.112 0.1234 0.145 4.09% Castro::estTimeStep() 21 0.02112 0.1043 0.1436 4.05% Castro::computeInitialDt() 2 0.002306 0.07667 0.1244 3.51% Castro::expand_state() 10 0.09967 0.1142 0.1238 3.49% Castro::clean_state() 62 0.1126 0.1159 0.1184 3.34% FabArray::ParallelCopy() 41 0.07456 0.08626 0.11 3.10% amrex::Copy() 193 0.06062 0.07108 0.07818 2.20% FabArray::setVal() 143 0.06297 0.06822 0.07639 2.15% Castro::initialize_advance() 10 0.06144 0.07023 0.07616 2.15% Castro::do_new_sources() 10 0.06019 0.06603 0.0754 2.13% FabArray::ParallelCopy_finish() 41 0.03244 0.0455 0.0736 2.07% Castro::computeTemp() 63 0.06666 0.06944 0.0715 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04842 0.04994 0.05193 1.46% Castro::reset_internal_energy(Fab) 1008 0.04814 0.04963 0.05162 1.46% Castro::do_old_sources() 10 0.03975 0.04483 0.04598 1.30% FabArray::ParallelCopy_nowait() 41 0.03631 0.04068 0.04252 1.20% Castro::normalize_species() 62 0.04049 0.04134 0.04232 1.19% StateDataPhysBCFunct::() 41 0.0338 0.03705 0.04025 1.13% StateData::FillBoundary(geom) 41 0.03369 0.03694 0.04014 1.13% Castro::construct_new_source() 50 0.02918 0.03227 0.03678 1.04% Castro::construct_new_gravity_source() 10 0.02302 0.02606 0.03028 0.85% Gravity::interpolate_monopole_grav() 21 0.02785 0.02834 0.02882 0.81% Castro::post_init() 1 0.02799 0.02828 0.0286 0.81% Amr::writePlotFile() 2 0.02577 0.02609 0.02635 0.74% VisMF::Write(FabArray) 2 0.0133 0.01408 0.01668 0.47% Castro::post_timestep() 10 0.01538 0.01579 0.01607 0.45% Castro::Castro() 1 0.01087 0.01209 0.01511 0.43% Castro::apply_source_to_state() 20 0.01231 0.01392 0.01469 0.41% FabArray::Saxpy() 20 0.01227 0.01388 0.01464 0.41% FabArray::setDomainBndry() 41 0.007674 0.01014 0.01167 0.33% Castro::check_for_nan() 20 0.009899 0.0106 0.01153 0.33% MultiFab::contains_nan() 20 0.009878 0.01058 0.01151 0.32% Castro::construct_old_source() 50 0.007563 0.01025 0.01101 0.31% Castro::construct_old_gravity_source() 10 0.007511 0.01018 0.01094 0.31% Castro::initMFs() 1 0.00689 0.008043 0.01084 0.31% Castro::computeNewDt() 9 0.008419 0.00843 0.008439 0.24% AmrLevel::AmrLevel(dm) 1 0.00568 0.006474 0.008349 0.24% StateData::define() 4 0.005652 0.006447 0.008318 0.23% Castro::enforce_min_density() 62 0.005694 0.005977 0.006343 0.18% Castro::swap_state_time_levels() 10 0.00332 0.004368 0.004734 0.13% Castro::finalize_advance() 10 0.002954 0.003463 0.00436 0.12% Castro::buildMetrics() 1 0.001728 0.001993 0.002612 0.07% Castro::post_regrid() 1 0.001518 0.001691 0.00204 0.06% Castro::finalize_do_advance() 10 0.0006729 0.001579 0.001958 0.06% Amr::InitAmr() 1 0.0002785 0.000361 0.0005196 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.396e-05 0.0001871 0.000271 0.01% DistributionMapping::LeastUsedCPUs() 1 8.653e-06 0.0001815 0.0002634 0.01% Castro::enforce_consistent_e() 1 8.125e-05 9.692e-05 0.0001419 0.00% FabArrayBase::getCPC() 41 6.644e-05 8.408e-05 0.0001137 0.00% Amr::writeSmallPlotFile() 1 2.486e-05 6.221e-05 7.772e-05 0.00% Gravity::set_mass_offset() 10 9.088e-06 1.439e-05 4.414e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.538e-05 3.745e-05 0.00% Castro::enforce_speed_limit() 62 2.61e-05 2.922e-05 3.305e-05 0.00% Amr::initSubcycle() 1 8.676e-06 1.104e-05 1.65e-05 0.00% Gravity::swapTimeLevels() 10 7.959e-06 1.065e-05 1.303e-05 0.00% Castro::create_source_corrector() 10 7.976e-06 9.268e-06 1.001e-05 0.00% Castro::FluxRegCrseInit 10 7.751e-06 8.415e-06 9.339e-06 0.00% Castro::retry_advance_ctu() 10 4.872e-06 5.619e-06 6.542e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.156e-06 2.615e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.093e-06 1.313e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-6-g25fcdfc433ac) finalized