MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-9-ge81a9c232c26) initialized Starting run at 06:48:12 UTC on 2023-02-06. Successfully read inputs file ... Castro git describe: 23.01-27-g39382f3e8 AMReX git describe: 23.02-9-ge81a9c232 Microphysics git describe: 23.02-2-g0c85d6ac reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01651621 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361334662 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.402853017 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.326514117 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328005106 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356556655 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.326461094 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314797672 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315547902 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314219481 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313620642 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010194 seconds Ending run at 06:48:15 UTC on 2023-02-06. Run time = 3.621445613 Run time without initialization = 3.377244692 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.62 ... 3.621 ... 3.622 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2679 2.3621 2.4301 67.10% Gravity::make_radial_gravity() 21 0.3257 0.3367 0.3463 9.56% Castro::do_advance_ctu() 10 0.03911 0.109 0.2046 5.65% Castro::estTimeStep() 21 0.03192 0.09952 0.1554 4.29% Castro::initData() 1 0.03851 0.08743 0.1539 4.25% amrex::Copy() 193 0.05985 0.07027 0.07751 2.14% FabArray::setVal() 143 0.05617 0.06578 0.07436 2.05% FabArray::ParallelCopy_finish() 41 0.037 0.04813 0.07424 2.05% Castro::reset_internal_energy(Fab) 1008 0.04817 0.0503 0.0535 1.48% Castro::normalize_species() 62 0.04124 0.04223 0.04318 1.19% FabArray::ParallelCopy_nowait() 41 0.03838 0.04109 0.04239 1.17% StateData::FillBoundary(geom) 41 0.03387 0.03769 0.04154 1.15% FillPatchIterator::Initialize 41 0.02967 0.0332 0.03549 0.98% Castro::construct_new_gravity_source() 10 0.02305 0.02581 0.02928 0.81% Gravity::interpolate_monopole_grav() 21 0.02822 0.0286 0.02902 0.80% Castro::computeTemp() 63 0.0176 0.0201 0.02156 0.60% Castro::initialize_do_advance() 10 0.01278 0.01682 0.01799 0.50% VisMF::Write(FabArray) 2 0.01388 0.01467 0.01751 0.48% Amr::InitAmr() 1 0.0002761 0.002284 0.01602 0.44% DistributionMapping::LeastUsedCPUs() 1 1.225e-05 0.01381 0.01583 0.44% FabArray::Saxpy() 20 0.01259 0.01393 0.01468 0.41% Castro::initialize_advance() 10 0.0041 0.009893 0.0134 0.37% MultiFab::contains_nan() 20 0.0103 0.01091 0.0123 0.34% FabArray::setDomainBndry() 41 0.00817 0.01008 0.01132 0.31% Castro::construct_old_gravity_source() 10 0.00837 0.01018 0.01085 0.30% Castro::initMFs() 1 0.006944 0.008008 0.01046 0.29% Amr::writePlotFile() 2 0.006697 0.00932 0.0099 0.27% StateData::define() 4 0.005736 0.006463 0.008183 0.23% Castro::construct_new_source() 50 0.00591 0.006263 0.006674 0.18% main() 1 0.004809 0.00579 0.006441 0.18% Castro::enforce_min_density() 62 0.005856 0.006001 0.006342 0.18% Castro::swap_state_time_levels() 10 0.003343 0.004435 0.005287 0.15% Gravity::get_new_grav_vector() 11 0.003141 0.003523 0.003861 0.11% Amr::coarseTimeStep() 10 0.001174 0.002239 0.003615 0.10% Gravity::get_old_grav_vector() 10 0.001673 0.002239 0.00265 0.07% Castro::buildMetrics() 1 0.001621 0.001841 0.00234 0.06% Castro::finalize_do_advance() 10 0.0006299 0.001468 0.001811 0.05% Castro::expand_state() 10 0.0006781 0.000788 0.0009231 0.03% Amr::timeStep() 10 0.0001869 0.0002435 0.0004122 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002858 0.0003113 0.0003541 0.01% Castro::clean_state() 62 0.0001428 0.0001572 0.0001742 0.00% Castro::enforce_consistent_e() 1 8.904e-05 0.0001011 0.0001193 0.00% StateDataPhysBCFunct::() 41 8.804e-05 0.0001039 0.0001157 0.00% Castro::finalize_advance() 10 9.631e-05 0.0001035 0.0001147 0.00% FabArray::ParallelCopy() 41 6.013e-05 7.562e-05 9.833e-05 0.00% Castro::construct_old_source() 50 5.372e-05 6.53e-05 8.429e-05 0.00% Castro::Castro() 1 6.101e-05 7.024e-05 8.343e-05 0.00% Amr::writeSmallPlotFile() 1 2.493e-05 6.169e-05 7.655e-05 0.00% Castro::advance() 10 3.235e-05 4.376e-05 7.641e-05 0.00% FillPatchSingleLevel 41 5.665e-05 6.338e-05 7.559e-05 0.00% FabArrayBase::getCPC() 41 3.44e-05 5.495e-05 7.243e-05 0.00% Amr::FinalizeInit() 1 4.208e-06 1.305e-05 7.234e-05 0.00% Castro::do_old_sources() 10 5.167e-05 6.107e-05 6.918e-05 0.00% Castro::do_new_sources() 10 5.387e-05 6.204e-05 6.861e-05 0.00% Castro::apply_source_to_state() 20 3.178e-05 4.364e-05 5.398e-05 0.00% Castro::subcycle_advance_ctu() 10 3.691e-05 4.589e-05 5.292e-05 0.00% Castro::construct_new_gravity() 10 3.557e-05 4.187e-05 5.085e-05 0.00% Castro::construct_old_gravity() 10 3.378e-05 3.836e-05 4.331e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.52e-05 2.993e-05 4.092e-05 0.00% Castro::enforce_speed_limit() 62 2.337e-05 2.843e-05 3.714e-05 0.00% Amr::defBaseLevel() 1 1.633e-05 2.314e-05 2.96e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.456e-05 2.954e-05 0.00% Castro::check_for_nan() 20 2.012e-05 2.271e-05 2.631e-05 0.00% Amr::initSubcycle() 1 8.72e-06 1.216e-05 2.48e-05 0.00% Castro::post_timestep() 10 1.572e-05 1.815e-05 2.037e-05 0.00% Gravity::set_mass_offset() 10 8.89e-06 1.111e-05 1.59e-05 0.00% Gravity::swapTimeLevels() 10 9.261e-06 1.122e-05 1.407e-05 0.00% Castro::FluxRegCrseInit 10 7.945e-06 9.034e-06 1.063e-05 0.00% Castro::create_source_corrector() 10 8.137e-06 9.418e-06 1.044e-05 0.00% Castro::computeNewDt() 9 7.986e-06 8.528e-06 9.021e-06 0.00% Amr::InitializeInit() 1 2.06e-06 3.49e-06 6.758e-06 0.00% Castro::retry_advance_ctu() 10 5.176e-06 5.626e-06 6.352e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.88e-06 4.723e-06 6.348e-06 0.00% Castro::computeInitialDt() 2 3.21e-06 4.136e-06 4.924e-06 0.00% Castro::post_init() 1 3.035e-06 3.729e-06 4.78e-06 0.00% Castro::post_regrid() 1 2.255e-06 2.948e-06 3.419e-06 0.00% Amr::init() 1 2.001e-06 2.358e-06 3.103e-06 0.00% Castro::FluxRegFineAdd() 10 1.925e-06 2.141e-06 2.38e-06 0.00% Amr::initialInit() 1 1.209e-06 1.509e-06 1.815e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.05e-06 1.359e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.62 3.621 3.621 100.00% Amr::coarseTimeStep() 10 3.361 3.361 3.361 92.80% Amr::timeStep() 10 3.348 3.349 3.35 92.50% Castro::advance() 10 3.332 3.333 3.333 92.05% Castro::subcycle_advance_ctu() 10 3.251 3.26 3.272 90.34% Castro::do_advance_ctu() 10 3.251 3.26 3.271 90.33% Castro::construct_ctu_hydro_source() 10 2.268 2.362 2.43 67.10% Gravity::make_radial_gravity() 21 0.3421 0.3529 0.3629 10.02% Amr::init() 1 0.2279 0.2417 0.2438 6.73% Amr::initialInit() 1 0.2113 0.2254 0.2276 6.28% Castro::construct_old_gravity() 10 0.2071 0.2162 0.2259 6.24% Gravity::get_old_grav_vector() 10 0.2064 0.2155 0.2252 6.22% Gravity::get_new_grav_vector() 11 0.217 0.2189 0.2205 6.09% Amr::InitializeInit() 1 0.07508 0.124 0.1968 5.43% Amr::defBaseLevel() 1 0.07508 0.124 0.1968 5.43% Castro::construct_new_gravity() 10 0.1914 0.1925 0.1935 5.34% FillPatchIterator::Initialize 41 0.1553 0.1705 0.1921 5.31% Castro::initialize_do_advance() 10 0.1497 0.1635 0.1736 4.79% Castro::initData() 1 0.04262 0.09168 0.1584 4.37% Castro::estTimeStep() 21 0.03192 0.09952 0.1554 4.29% FillPatchSingleLevel 41 0.1172 0.1272 0.1535 4.24% Amr::FinalizeInit() 1 0.0304 0.1014 0.1525 4.21% Castro::expand_state() 10 0.1017 0.1161 0.1293 3.57% Castro::computeInitialDt() 2 0.002358 0.07343 0.1244 3.43% Castro::clean_state() 62 0.1132 0.118 0.1241 3.43% FabArray::ParallelCopy() 41 0.07948 0.08937 0.1128 3.12% Castro::initialize_advance() 10 0.05697 0.06946 0.07806 2.16% amrex::Copy() 193 0.05985 0.07027 0.07751 2.14% Castro::computeTemp() 63 0.06606 0.07071 0.0754 2.08% FabArray::setVal() 143 0.05617 0.06578 0.07436 2.05% FabArray::ParallelCopy_finish() 41 0.037 0.04813 0.07424 2.05% Castro::do_new_sources() 10 0.06013 0.06514 0.07269 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04846 0.05061 0.05384 1.49% Castro::reset_internal_energy(Fab) 1008 0.04817 0.0503 0.0535 1.48% Castro::do_old_sources() 10 0.04236 0.04527 0.04793 1.32% Castro::normalize_species() 62 0.04124 0.04223 0.04318 1.19% FabArray::ParallelCopy_nowait() 41 0.03848 0.04117 0.04245 1.17% StateDataPhysBCFunct::() 41 0.03395 0.0378 0.04165 1.15% StateData::FillBoundary(geom) 41 0.03387 0.03769 0.04154 1.15% Castro::construct_new_source() 50 0.0292 0.03207 0.03596 0.99% Castro::construct_new_gravity_source() 10 0.02305 0.02581 0.02928 0.81% Gravity::interpolate_monopole_grav() 21 0.02822 0.0286 0.02902 0.80% Castro::post_init() 1 0.02714 0.02751 0.02771 0.77% Amr::writePlotFile() 2 0.02646 0.0266 0.02696 0.74% VisMF::Write(FabArray) 2 0.01388 0.01467 0.01751 0.48% Castro::post_timestep() 10 0.01504 0.01587 0.01634 0.45% Amr::InitAmr() 1 0.0002858 0.002297 0.01604 0.44% DistributionMapping::SFCProcessorMapDoIt() 1 1.772e-05 0.01382 0.01584 0.44% DistributionMapping::LeastUsedCPUs() 1 1.225e-05 0.01381 0.01583 0.44% Castro::apply_source_to_state() 20 0.01264 0.01397 0.01473 0.41% FabArray::Saxpy() 20 0.01259 0.01393 0.01468 0.41% Castro::Castro() 1 0.01084 0.01197 0.01464 0.40% Castro::check_for_nan() 20 0.01032 0.01094 0.01232 0.34% MultiFab::contains_nan() 20 0.0103 0.01091 0.0123 0.34% FabArray::setDomainBndry() 41 0.00817 0.01008 0.01132 0.31% Castro::construct_old_source() 50 0.008428 0.01024 0.01091 0.30% Castro::construct_old_gravity_source() 10 0.00837 0.01018 0.01085 0.30% Castro::initMFs() 1 0.006944 0.008008 0.01046 0.29% Castro::computeNewDt() 9 0.008434 0.00844 0.008446 0.23% AmrLevel::AmrLevel(dm) 1 0.005762 0.006493 0.008224 0.23% StateData::define() 4 0.005736 0.006463 0.008183 0.23% Castro::enforce_min_density() 62 0.005856 0.006001 0.006342 0.18% Castro::swap_state_time_levels() 10 0.003343 0.004435 0.005287 0.15% Castro::finalize_advance() 10 0.00293 0.003391 0.003857 0.11% Castro::buildMetrics() 1 0.001742 0.001988 0.002564 0.07% Castro::post_regrid() 1 0.001588 0.001671 0.001827 0.05% Castro::finalize_do_advance() 10 0.0006299 0.001468 0.001811 0.05% Castro::enforce_consistent_e() 1 8.904e-05 0.0001011 0.0001193 0.00% FabArrayBase::getCPC() 41 5.814e-05 7.951e-05 9.77e-05 0.00% Amr::writeSmallPlotFile() 1 2.493e-05 6.169e-05 7.655e-05 0.00% Castro::enforce_speed_limit() 62 2.337e-05 2.843e-05 3.714e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.456e-05 2.954e-05 0.00% Amr::initSubcycle() 1 8.72e-06 1.216e-05 2.48e-05 0.00% Gravity::set_mass_offset() 10 8.89e-06 1.111e-05 1.59e-05 0.00% Gravity::swapTimeLevels() 10 9.261e-06 1.122e-05 1.407e-05 0.00% Castro::FluxRegCrseInit 10 7.945e-06 9.034e-06 1.063e-05 0.00% Castro::create_source_corrector() 10 8.137e-06 9.418e-06 1.044e-05 0.00% Castro::retry_advance_ctu() 10 5.176e-06 5.626e-06 6.352e-06 0.00% Castro::FluxRegFineAdd() 10 1.925e-06 2.141e-06 2.38e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.05e-06 1.359e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-9-ge81a9c232c26) finalized