MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-14-g6dc1f61f3567) initialized Starting run at 06:38:45 UTC on 2023-02-08. Successfully read inputs file ... Castro git describe: 23.01-28-gbabec27eb AMReX git describe: 23.02-14-g6dc1f61f3 Microphysics git describe: 23.02-5-gcc58fec0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017964937 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370143495 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357223336 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330205312 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330040846 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362004264 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.32918442 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316048445 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314760018 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314839555 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315365196 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010241748 seconds Ending run at 06:38:48 UTC on 2023-02-08. Run time = 3.6110338 Run time without initialization = 3.357490221 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.61 ... 3.611 ... 3.611 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2810 2.3585 2.4106 66.76% Gravity::make_radial_gravity() 21 0.3299 0.3458 0.3639 10.08% Castro::estTimeStep() 21 0.02193 0.09759 0.1669 4.62% Castro::do_advance_ctu() 10 0.02962 0.08467 0.1632 4.52% Castro::initData() 1 0.04007 0.09925 0.1631 4.52% FabArray::ParallelCopy_finish() 41 0.03821 0.05272 0.08091 2.24% amrex::Copy() 193 0.05884 0.0706 0.07847 2.17% FabArray::setVal() 143 0.05587 0.06588 0.0758 2.10% Castro::reset_internal_energy(Fab) 1008 0.04816 0.05139 0.05533 1.53% Castro::normalize_species() 62 0.04111 0.04266 0.0447 1.24% FabArray::ParallelCopy_nowait() 41 0.03835 0.04154 0.04351 1.20% StateData::FillBoundary(geom) 41 0.03469 0.03714 0.03961 1.10% FillPatchIterator::Initialize 41 0.03004 0.03386 0.03653 1.01% Castro::construct_new_gravity_source() 10 0.02379 0.0262 0.02976 0.82% Gravity::interpolate_monopole_grav() 21 0.02767 0.02858 0.02968 0.82% Castro::computeTemp() 63 0.01913 0.02057 0.02206 0.61% Castro::initialize_do_advance() 10 0.01278 0.01716 0.01952 0.54% VisMF::Write(FabArray) 2 0.01365 0.01486 0.01898 0.53% FabArray::Saxpy() 20 0.01258 0.01407 0.01494 0.41% Castro::initialize_advance() 10 0.004097 0.01015 0.01389 0.38% Amr::writePlotFile() 2 0.007113 0.01156 0.01364 0.38% MultiFab::contains_nan() 20 0.0101 0.0111 0.01187 0.33% FabArray::setDomainBndry() 41 0.007895 0.0101 0.01183 0.33% Castro::construct_old_gravity_source() 10 0.007566 0.01028 0.01105 0.31% Castro::initMFs() 1 0.006843 0.008523 0.009993 0.28% StateData::define() 4 0.005635 0.006972 0.008099 0.22% Castro::construct_new_source() 50 0.005931 0.006391 0.006784 0.19% main() 1 0.005168 0.006098 0.006622 0.18% Castro::enforce_min_density() 62 0.005842 0.006132 0.00658 0.18% Castro::swap_state_time_levels() 10 0.003313 0.00496 0.006456 0.18% Gravity::get_new_grav_vector() 11 0.00311 0.003717 0.004214 0.12% Gravity::get_old_grav_vector() 10 0.001657 0.002362 0.002818 0.08% Amr::coarseTimeStep() 10 0.00179 0.002046 0.002572 0.07% Castro::buildMetrics() 1 0.001603 0.00199 0.002325 0.06% Castro::finalize_do_advance() 10 0.0008029 0.001661 0.002019 0.06% Castro::expand_state() 10 0.0007371 0.0008221 0.0009795 0.03% Amr::InitAmr() 1 0.0002816 0.000427 0.0005459 0.02% Amr::timeStep() 10 0.0001929 0.0002604 0.0005323 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002811 0.0003001 0.000325 0.01% DistributionMapping::LeastUsedCPUs() 1 8.083e-06 0.0001433 0.0003198 0.01% Castro::clean_state() 62 0.0001402 0.0001628 0.0001858 0.01% Castro::enforce_consistent_e() 1 7.818e-05 0.0001162 0.0001699 0.00% StateDataPhysBCFunct::() 41 9.41e-05 0.0001057 0.0001131 0.00% Castro::finalize_advance() 10 8.461e-05 9.884e-05 0.0001119 0.00% Castro::Castro() 1 5.479e-05 7.366e-05 8.973e-05 0.00% FabArray::ParallelCopy() 41 6.368e-05 7.401e-05 8.814e-05 0.00% Castro::construct_old_source() 50 4.605e-05 7.073e-05 8.428e-05 0.00% Castro::subcycle_advance_ctu() 10 3.565e-05 5.148e-05 8.268e-05 0.00% FillPatchSingleLevel 41 6.939e-05 7.429e-05 7.694e-05 0.00% Amr::writeSmallPlotFile() 1 3.243e-05 6.262e-05 7.691e-05 0.00% Castro::do_old_sources() 10 4.046e-05 5.869e-05 7.296e-05 0.00% Castro::do_new_sources() 10 5.422e-05 6.229e-05 7.017e-05 0.00% Amr::FinalizeInit() 1 3.937e-06 1.359e-05 6.962e-05 0.00% FabArrayBase::getCPC() 41 4.575e-05 5.498e-05 6.73e-05 0.00% Castro::apply_source_to_state() 20 4.252e-05 4.879e-05 6.09e-05 0.00% Castro::construct_new_gravity() 10 3.607e-05 4.13e-05 5.072e-05 0.00% Castro::construct_old_gravity() 10 3.917e-05 4.219e-05 4.703e-05 0.00% Castro::advance() 10 3.791e-05 4.215e-05 4.576e-05 0.00% Amr::defBaseLevel() 1 3.327e-05 3.84e-05 4.255e-05 0.00% FabArrayBase::CPC::define() 2 2.18e-05 2.752e-05 3.687e-05 0.00% Castro::enforce_speed_limit() 62 2.501e-05 2.784e-05 3.336e-05 0.00% Castro::check_for_nan() 20 2.17e-05 2.343e-05 2.455e-05 0.00% Amr::initSubcycle() 1 8.892e-06 1.431e-05 2.357e-05 0.00% Castro::post_timestep() 10 1.711e-05 1.912e-05 2.279e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.538e-06 1.22e-05 2.129e-05 0.00% Gravity::swapTimeLevels() 10 8.955e-06 1.127e-05 1.476e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.722e-06 5.694e-06 1.279e-05 0.00% Gravity::set_mass_offset() 10 9.029e-06 1.006e-05 1.13e-05 0.00% Castro::FluxRegCrseInit 10 7.117e-06 8.748e-06 1.09e-05 0.00% Castro::create_source_corrector() 10 6.555e-06 9.444e-06 1.073e-05 0.00% Castro::computeNewDt() 9 6.99e-06 7.938e-06 9.248e-06 0.00% Castro::post_regrid() 1 2.184e-06 3.78e-06 6.762e-06 0.00% Castro::computeInitialDt() 2 3.74e-06 4.742e-06 5.737e-06 0.00% Castro::retry_advance_ctu() 10 4.282e-06 4.902e-06 5.704e-06 0.00% Amr::InitializeInit() 1 2.196e-06 2.968e-06 5.179e-06 0.00% Castro::post_init() 1 3.234e-06 4.179e-06 5.11e-06 0.00% Amr::init() 1 2.184e-06 2.439e-06 2.967e-06 0.00% Castro::FluxRegFineAdd() 10 2.046e-06 2.439e-06 2.78e-06 0.00% Amr::initialInit() 1 9.83e-07 1.441e-06 2.067e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.245e-06 1.628e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.61 3.611 3.611 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 92.51% Amr::timeStep() 10 3.328 3.328 3.329 92.18% Castro::advance() 10 3.312 3.312 3.313 91.73% Castro::subcycle_advance_ctu() 10 3.228 3.238 3.25 90.01% Castro::do_advance_ctu() 10 3.228 3.238 3.25 90.00% Castro::construct_ctu_hydro_source() 10 2.281 2.359 2.411 66.76% Gravity::make_radial_gravity() 21 0.3455 0.3619 0.3774 10.45% Amr::init() 1 0.2528 0.2529 0.2531 7.01% Gravity::get_new_grav_vector() 11 0.2313 0.2337 0.2358 6.53% Amr::initialInit() 1 0.2335 0.2345 0.2353 6.52% Castro::construct_old_gravity() 10 0.2005 0.2119 0.2253 6.24% Gravity::get_old_grav_vector() 10 0.1997 0.2112 0.2247 6.22% Castro::construct_new_gravity() 10 0.1938 0.1954 0.1966 5.45% FillPatchIterator::Initialize 41 0.163 0.1757 0.1936 5.36% Amr::InitializeInit() 1 0.05977 0.1236 0.1915 5.30% Amr::defBaseLevel() 1 0.05977 0.1236 0.1915 5.30% Amr::FinalizeInit() 1 0.04363 0.1109 0.1751 4.85% Castro::initialize_do_advance() 10 0.1608 0.1699 0.1751 4.85% Castro::initData() 1 0.04369 0.1039 0.1689 4.68% Castro::estTimeStep() 21 0.02193 0.09759 0.1669 4.62% FillPatchSingleLevel 41 0.1196 0.1317 0.1557 4.31% Castro::computeInitialDt() 2 0.00325 0.07127 0.1351 3.74% Castro::expand_state() 10 0.1129 0.1219 0.1282 3.55% Castro::clean_state() 62 0.1149 0.12 0.1271 3.52% FabArray::ParallelCopy() 41 0.08188 0.09441 0.1194 3.31% FabArray::ParallelCopy_finish() 41 0.03821 0.05272 0.08091 2.24% Castro::initialize_advance() 10 0.05746 0.07056 0.08071 2.23% amrex::Copy() 193 0.05884 0.0706 0.07847 2.17% Castro::computeTemp() 63 0.06758 0.07226 0.0777 2.15% FabArray::setVal() 143 0.05587 0.06588 0.0758 2.10% Castro::do_new_sources() 10 0.06092 0.06591 0.07362 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04845 0.05169 0.05563 1.54% Castro::reset_internal_energy(Fab) 1008 0.04816 0.05139 0.05533 1.53% Castro::do_old_sources() 10 0.04071 0.04557 0.0466 1.29% Castro::normalize_species() 62 0.04111 0.04266 0.0447 1.24% FabArray::ParallelCopy_nowait() 41 0.03845 0.04162 0.04359 1.21% Castro::post_init() 1 0.03878 0.03933 0.04 1.11% StateDataPhysBCFunct::() 41 0.0348 0.03725 0.03972 1.10% StateData::FillBoundary(geom) 41 0.03469 0.03714 0.03961 1.10% Castro::construct_new_source() 50 0.0302 0.03259 0.03655 1.01% Castro::construct_new_gravity_source() 10 0.02379 0.0262 0.02976 0.82% Gravity::interpolate_monopole_grav() 21 0.02767 0.02858 0.02968 0.82% Amr::writePlotFile() 2 0.0279 0.02875 0.02967 0.82% VisMF::Write(FabArray) 2 0.01365 0.01486 0.01898 0.53% Castro::post_timestep() 10 0.01594 0.01616 0.01635 0.45% Castro::apply_source_to_state() 20 0.01263 0.01411 0.01499 0.42% FabArray::Saxpy() 20 0.01258 0.01407 0.01494 0.41% Castro::Castro() 1 0.01023 0.01248 0.01463 0.41% Castro::check_for_nan() 20 0.01012 0.01113 0.0119 0.33% MultiFab::contains_nan() 20 0.0101 0.0111 0.01187 0.33% FabArray::setDomainBndry() 41 0.007895 0.0101 0.01183 0.33% Castro::construct_old_source() 50 0.007612 0.01035 0.01113 0.31% Castro::construct_old_gravity_source() 10 0.007566 0.01028 0.01105 0.31% Castro::initMFs() 1 0.006843 0.008523 0.009993 0.28% Castro::computeNewDt() 9 0.0084 0.008416 0.008423 0.23% AmrLevel::AmrLevel(dm) 1 0.005644 0.006984 0.008114 0.22% StateData::define() 4 0.005635 0.006972 0.008099 0.22% Castro::enforce_min_density() 62 0.005842 0.006132 0.00658 0.18% Castro::swap_state_time_levels() 10 0.003313 0.00496 0.006456 0.18% Castro::finalize_advance() 10 0.003085 0.00349 0.004015 0.11% Castro::post_regrid() 1 0.001559 0.002038 0.002938 0.08% Castro::buildMetrics() 1 0.001718 0.002168 0.002571 0.07% Castro::finalize_do_advance() 10 0.0008029 0.001661 0.002019 0.06% Amr::InitAmr() 1 0.0002904 0.0004413 0.0005623 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.38e-05 0.0001503 0.0003259 0.01% DistributionMapping::LeastUsedCPUs() 1 8.083e-06 0.0001433 0.0003198 0.01% Castro::enforce_consistent_e() 1 7.818e-05 0.0001162 0.0001699 0.00% FabArrayBase::getCPC() 41 6.755e-05 8.25e-05 0.0001006 0.00% Amr::writeSmallPlotFile() 1 3.243e-05 6.262e-05 7.691e-05 0.00% FabArrayBase::CPC::define() 2 2.18e-05 2.752e-05 3.687e-05 0.00% Castro::enforce_speed_limit() 62 2.501e-05 2.784e-05 3.336e-05 0.00% Amr::initSubcycle() 1 8.892e-06 1.431e-05 2.357e-05 0.00% Gravity::swapTimeLevels() 10 8.955e-06 1.127e-05 1.476e-05 0.00% Gravity::set_mass_offset() 10 9.029e-06 1.006e-05 1.13e-05 0.00% Castro::FluxRegCrseInit 10 7.117e-06 8.748e-06 1.09e-05 0.00% Castro::create_source_corrector() 10 6.555e-06 9.444e-06 1.073e-05 0.00% Castro::retry_advance_ctu() 10 4.282e-06 4.902e-06 5.704e-06 0.00% Castro::FluxRegFineAdd() 10 2.046e-06 2.439e-06 2.78e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.245e-06 1.628e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 35 B 47 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 18 KiB 21 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-14-g6dc1f61f3567) finalized