MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-16-g0c444b898f8a) initialized Starting run at 06:40:46 UTC on 2023-02-09. Successfully read inputs file ... Castro git describe: 23.01-29-g09845e315 AMReX git describe: 23.02-16-g0c444b898 Microphysics git describe: 23.02-6-gb79fe5f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016640949 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.386925172 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351336341 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.367909037 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.325399835 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354223955 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328004199 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311040274 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312959085 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311919047 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313145491 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01044442 seconds Ending run at 06:40:50 UTC on 2023-02-09. Run time = 3.61093483 Run time without initialization = 3.380312517 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.609 ... 3.61 ... 3.611 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3324 2.3570 2.3960 66.35% Gravity::make_radial_gravity() 21 0.3255 0.3354 0.3423 9.48% Castro::initData() 1 0.0483 0.09568 0.1517 4.20% Castro::do_advance_ctu() 10 0.08467 0.1235 0.1493 4.14% Castro::estTimeStep() 21 0.02224 0.08662 0.1295 3.59% amrex::Copy() 193 0.06154 0.07057 0.076 2.10% FabArray::ParallelCopy_finish() 41 0.03802 0.04847 0.07475 2.07% FabArray::setVal() 143 0.05568 0.06476 0.07288 2.02% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05055 0.05356 1.48% Castro::normalize_species() 62 0.04116 0.04233 0.04447 1.23% FabArray::ParallelCopy_nowait() 41 0.03745 0.04128 0.0424 1.17% StateData::FillBoundary(geom) 41 0.03412 0.03762 0.04133 1.14% FillPatchIterator::Initialize 41 0.03004 0.03353 0.03543 0.98% Castro::construct_new_gravity_source() 10 0.0234 0.02579 0.02886 0.80% Gravity::interpolate_monopole_grav() 21 0.02757 0.02824 0.02867 0.79% Castro::computeTemp() 63 0.0187 0.01995 0.02092 0.58% Castro::initialize_do_advance() 10 0.01246 0.0165 0.01865 0.52% VisMF::Write(FabArray) 2 0.01387 0.01466 0.01749 0.48% FabArray::Saxpy() 20 0.01232 0.01352 0.01417 0.39% Castro::initialize_advance() 10 0.004067 0.009644 0.01279 0.35% MultiFab::contains_nan() 20 0.0105 0.01101 0.01203 0.33% FabArray::setDomainBndry() 41 0.008092 0.01014 0.01141 0.32% Amr::writePlotFile() 2 0.007346 0.01043 0.01135 0.31% Castro::construct_old_gravity_source() 10 0.00819 0.01 0.01052 0.29% Castro::initMFs() 1 0.006746 0.008577 0.009994 0.28% StateData::define() 4 0.005679 0.007194 0.008327 0.23% Castro::construct_new_source() 50 0.005776 0.006194 0.006496 0.18% Castro::enforce_min_density() 62 0.005799 0.006035 0.006386 0.18% main() 1 0.004607 0.005629 0.00622 0.17% Castro::swap_state_time_levels() 10 0.003687 0.004526 0.005275 0.15% Gravity::get_new_grav_vector() 11 0.003078 0.003612 0.004223 0.12% Amr::coarseTimeStep() 10 0.001163 0.002279 0.002973 0.08% Gravity::get_old_grav_vector() 10 0.001869 0.002354 0.002726 0.08% Castro::buildMetrics() 1 0.001626 0.002041 0.002356 0.07% Castro::finalize_do_advance() 10 0.0006201 0.001355 0.001637 0.05% Castro::expand_state() 10 0.000652 0.0008146 0.001107 0.03% Amr::InitAmr() 1 0.0002718 0.000413 0.0005174 0.01% Amr::timeStep() 10 0.0001775 0.0002506 0.0004705 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000287 0.0002985 0.0003228 0.01% DistributionMapping::LeastUsedCPUs() 1 7.501e-06 0.0001229 0.0002712 0.01% Castro::clean_state() 62 0.0001384 0.0001602 0.0001726 0.00% Castro::enforce_consistent_e() 1 8.241e-05 0.0001075 0.0001502 0.00% Castro::finalize_advance() 10 9.118e-05 0.0001002 0.0001152 0.00% StateDataPhysBCFunct::() 41 8.314e-05 9.757e-05 0.0001133 0.00% Castro::Castro() 1 6.016e-05 7.392e-05 9.288e-05 0.00% Castro::construct_old_source() 50 5.184e-05 6.75e-05 8.874e-05 0.00% FillPatchSingleLevel 41 6.73e-05 7.653e-05 8.676e-05 0.00% Amr::writeSmallPlotFile() 1 3.23e-05 6.592e-05 8.106e-05 0.00% FabArray::ParallelCopy() 41 6.038e-05 7.086e-05 8.103e-05 0.00% Amr::FinalizeInit() 1 3.71e-06 1.393e-05 7.571e-05 0.00% Castro::advance() 10 3.666e-05 4.398e-05 7.266e-05 0.00% Castro::do_new_sources() 10 5.408e-05 6.133e-05 6.965e-05 0.00% Castro::do_old_sources() 10 5.109e-05 6.139e-05 6.744e-05 0.00% FabArrayBase::getCPC() 41 3.97e-05 4.827e-05 6.014e-05 0.00% Castro::subcycle_advance_ctu() 10 3.81e-05 4.547e-05 5.324e-05 0.00% Amr::defBaseLevel() 1 3.059e-05 4.16e-05 5.023e-05 0.00% Castro::apply_source_to_state() 20 3.805e-05 4.411e-05 4.85e-05 0.00% Castro::construct_new_gravity() 10 3.36e-05 4.24e-05 4.811e-05 0.00% Castro::construct_old_gravity() 10 3.496e-05 3.995e-05 4.376e-05 0.00% Castro::enforce_speed_limit() 62 2.149e-05 2.667e-05 3.262e-05 0.00% FabArrayBase::CPC::define() 2 2.047e-05 2.569e-05 3.18e-05 0.00% Castro::check_for_nan() 20 2.094e-05 2.337e-05 2.569e-05 0.00% Castro::post_timestep() 10 1.508e-05 1.823e-05 2.21e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.05e-05 1.429e-05 2.104e-05 0.00% Amr::initSubcycle() 1 9.216e-06 1.428e-05 2.099e-05 0.00% Gravity::swapTimeLevels() 10 8.82e-06 9.792e-06 1.105e-05 0.00% Gravity::set_mass_offset() 10 8.983e-06 9.921e-06 1.09e-05 0.00% Castro::create_source_corrector() 10 7.879e-06 8.835e-06 1.023e-05 0.00% Castro::computeNewDt() 9 7.604e-06 8.338e-06 9.439e-06 0.00% Castro::FluxRegCrseInit 10 6.848e-06 8.379e-06 9.316e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.9e-06 5.217e-06 7.155e-06 0.00% Castro::post_regrid() 1 2.059e-06 3.358e-06 6.495e-06 0.00% Castro::retry_advance_ctu() 10 4.284e-06 5.003e-06 6.459e-06 0.00% Amr::InitializeInit() 1 2.047e-06 2.907e-06 5.921e-06 0.00% Castro::computeInitialDt() 2 3.364e-06 4.44e-06 5.393e-06 0.00% Castro::post_init() 1 2.817e-06 3.927e-06 4.95e-06 0.00% Amr::init() 1 1.855e-06 2.258e-06 2.572e-06 0.00% Castro::FluxRegFineAdd() 10 1.864e-06 2.164e-06 2.51e-06 0.00% Amr::initialInit() 1 1.146e-06 1.51e-06 1.961e-06 0.00% DistributionMapping::Distribute() 1 8.63e-07 1.212e-06 1.643e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.609 3.61 3.611 100.00% Amr::coarseTimeStep() 10 3.364 3.364 3.364 93.15% Amr::timeStep() 10 3.351 3.352 3.353 92.85% Castro::advance() 10 3.335 3.336 3.336 92.39% Castro::subcycle_advance_ctu() 10 3.256 3.263 3.275 90.70% Castro::do_advance_ctu() 10 3.256 3.263 3.275 90.70% Castro::construct_ctu_hydro_source() 10 2.332 2.357 2.396 66.35% Gravity::make_radial_gravity() 21 0.3409 0.3515 0.3565 9.87% Amr::init() 1 0.2299 0.23 0.2302 6.37% Gravity::get_new_grav_vector() 11 0.2209 0.2227 0.2244 6.21% Castro::construct_old_gravity() 10 0.2027 0.2111 0.2147 5.95% Gravity::get_old_grav_vector() 10 0.2019 0.2103 0.214 5.93% Amr::initialInit() 1 0.2125 0.2129 0.2132 5.91% FillPatchIterator::Initialize 41 0.1603 0.1714 0.1933 5.35% Castro::construct_new_gravity() 10 0.1909 0.1922 0.1931 5.35% Amr::InitializeInit() 1 0.07009 0.1199 0.1783 4.94% Amr::defBaseLevel() 1 0.07009 0.1199 0.1782 4.94% Castro::initialize_do_advance() 10 0.1536 0.1634 0.173 4.79% Castro::initData() 1 0.05237 0.1 0.1555 4.31% FillPatchSingleLevel 41 0.1181 0.1277 0.1539 4.26% Amr::FinalizeInit() 1 0.03457 0.09304 0.1431 3.96% Castro::expand_state() 10 0.1066 0.1169 0.1297 3.59% Castro::estTimeStep() 21 0.02224 0.08662 0.1295 3.59% Castro::clean_state() 62 0.1142 0.1182 0.1243 3.44% FabArray::ParallelCopy() 41 0.0804 0.0899 0.1124 3.11% Castro::computeInitialDt() 2 0.002193 0.06068 0.1104 3.06% Castro::initialize_advance() 10 0.0563 0.0689 0.07647 2.12% amrex::Copy() 193 0.06154 0.07057 0.076 2.10% Castro::computeTemp() 63 0.06777 0.0708 0.07479 2.07% FabArray::ParallelCopy_finish() 41 0.03802 0.04847 0.07475 2.07% FabArray::setVal() 143 0.05568 0.06476 0.07288 2.02% Castro::do_new_sources() 10 0.06057 0.06482 0.07181 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04874 0.05084 0.05388 1.49% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05055 0.05356 1.48% Castro::do_old_sources() 10 0.04198 0.04476 0.04685 1.30% Castro::normalize_species() 62 0.04116 0.04233 0.04447 1.23% FabArray::ParallelCopy_nowait() 41 0.03754 0.04136 0.04248 1.18% StateDataPhysBCFunct::() 41 0.03421 0.03772 0.04145 1.15% StateData::FillBoundary(geom) 41 0.03412 0.03762 0.04133 1.14% Castro::construct_new_source() 50 0.02962 0.03198 0.03536 0.98% Castro::post_init() 1 0.03067 0.03151 0.03219 0.89% Castro::construct_new_gravity_source() 10 0.0234 0.02579 0.02886 0.80% Gravity::interpolate_monopole_grav() 21 0.02757 0.02824 0.02867 0.79% Amr::writePlotFile() 2 0.02732 0.02764 0.028 0.78% VisMF::Write(FabArray) 2 0.01387 0.01466 0.01749 0.48% Castro::post_timestep() 10 0.01551 0.01589 0.01619 0.45% Castro::Castro() 1 0.009871 0.01249 0.01465 0.41% Castro::apply_source_to_state() 20 0.01237 0.01357 0.01422 0.39% FabArray::Saxpy() 20 0.01232 0.01352 0.01417 0.39% Castro::check_for_nan() 20 0.01052 0.01103 0.01205 0.33% MultiFab::contains_nan() 20 0.0105 0.01101 0.01203 0.33% FabArray::setDomainBndry() 41 0.008092 0.01014 0.01141 0.32% Castro::construct_old_source() 50 0.008242 0.01007 0.01058 0.29% Castro::construct_old_gravity_source() 10 0.00819 0.01 0.01052 0.29% Castro::initMFs() 1 0.006746 0.008577 0.009994 0.28% Castro::computeNewDt() 9 0.00846 0.008472 0.008479 0.23% AmrLevel::AmrLevel(dm) 1 0.005694 0.007208 0.008347 0.23% StateData::define() 4 0.005679 0.007194 0.008327 0.23% Castro::enforce_min_density() 62 0.005799 0.006035 0.006386 0.18% Castro::swap_state_time_levels() 10 0.003687 0.004526 0.005275 0.15% Castro::finalize_advance() 10 0.002949 0.003445 0.004031 0.11% Castro::post_regrid() 1 0.001563 0.002066 0.002957 0.08% Castro::buildMetrics() 1 0.001747 0.002216 0.002577 0.07% Castro::finalize_do_advance() 10 0.0006201 0.001355 0.001637 0.05% Amr::InitAmr() 1 0.0002815 0.0004272 0.0005323 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.269e-05 0.0001294 0.0002789 0.01% DistributionMapping::LeastUsedCPUs() 1 7.501e-06 0.0001229 0.0002712 0.01% Castro::enforce_consistent_e() 1 8.241e-05 0.0001075 0.0001502 0.00% FabArrayBase::getCPC() 41 6.415e-05 7.396e-05 8.96e-05 0.00% Amr::writeSmallPlotFile() 1 3.23e-05 6.592e-05 8.106e-05 0.00% Castro::enforce_speed_limit() 62 2.149e-05 2.667e-05 3.262e-05 0.00% FabArrayBase::CPC::define() 2 2.047e-05 2.569e-05 3.18e-05 0.00% Amr::initSubcycle() 1 9.216e-06 1.428e-05 2.099e-05 0.00% Gravity::swapTimeLevels() 10 8.82e-06 9.792e-06 1.105e-05 0.00% Gravity::set_mass_offset() 10 8.983e-06 9.921e-06 1.09e-05 0.00% Castro::create_source_corrector() 10 7.879e-06 8.835e-06 1.023e-05 0.00% Castro::FluxRegCrseInit 10 6.848e-06 8.379e-06 9.316e-06 0.00% Castro::retry_advance_ctu() 10 4.284e-06 5.003e-06 6.459e-06 0.00% Castro::FluxRegFineAdd() 10 1.864e-06 2.164e-06 2.51e-06 0.00% DistributionMapping::Distribute() 1 8.63e-07 1.212e-06 1.643e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 18 KiB 21 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-16-g0c444b898f8a) finalized