MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-19-g1f7a2f52b84d) initialized Starting run at 17:05:55 UTC on 2023-02-10. Successfully read inputs file ... Castro git describe: 23.01-32-g21e9735b0 AMReX git describe: 23.02-19-g1f7a2f52b Microphysics git describe: 23.02-8-g0bee1f65 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016680755 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365958389 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352377914 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329465208 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327907103 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356550263 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.32855046 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311131147 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31147387 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315720615 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311052634 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010434703 seconds Ending run at 17:05:59 UTC on 2023-02-10. Run time = 3.556909086 Run time without initialization = 3.327645311 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.556 ... 3.557 ... 3.557 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2967 2.3478 2.3980 67.42% Gravity::make_radial_gravity() 21 0.3148 0.3292 0.3421 9.62% Castro::initData() 1 0.03999 0.08688 0.1539 4.33% Castro::estTimeStep() 21 0.03328 0.1021 0.1423 4.00% Castro::do_advance_ctu() 10 0.02292 0.07763 0.1324 3.72% FabArray::setVal() 143 0.05863 0.06792 0.07921 2.23% FabArray::ParallelCopy_finish() 41 0.03614 0.0469 0.07818 2.20% amrex::Copy() 193 0.05958 0.06961 0.07614 2.14% Castro::reset_internal_energy(Fab) 1008 0.04886 0.0503 0.05175 1.45% FabArray::ParallelCopy_nowait() 41 0.03764 0.04148 0.04344 1.22% Castro::normalize_species() 62 0.04179 0.04221 0.04295 1.21% StateData::FillBoundary(geom) 41 0.0321 0.03594 0.04079 1.15% FillPatchIterator::Initialize 41 0.02961 0.03325 0.03615 1.02% Castro::construct_new_gravity_source() 10 0.02375 0.02647 0.03043 0.86% Gravity::interpolate_monopole_grav() 21 0.02832 0.02863 0.02904 0.82% Castro::computeTemp() 63 0.01953 0.02012 0.0207 0.58% Castro::initialize_do_advance() 10 0.01278 0.0172 0.01942 0.55% VisMF::Write(FabArray) 2 0.01365 0.01454 0.01745 0.49% FabArray::Saxpy() 20 0.01244 0.01389 0.01451 0.41% Castro::initialize_advance() 10 0.004098 0.01004 0.01341 0.38% MultiFab::contains_nan() 20 0.01137 0.01211 0.01308 0.37% FabArray::setDomainBndry() 41 0.007808 0.01039 0.0118 0.33% Amr::writePlotFile() 2 0.007135 0.009875 0.01085 0.30% Castro::construct_old_gravity_source() 10 0.007517 0.01023 0.01083 0.30% Castro::initMFs() 1 0.006684 0.007773 0.0103 0.29% StateData::define() 4 0.005521 0.006303 0.008162 0.23% Castro::construct_new_source() 50 0.005771 0.006276 0.006606 0.19% Castro::enforce_min_density() 62 0.005819 0.006155 0.006408 0.18% main() 1 0.005261 0.005797 0.006247 0.18% Gravity::get_new_grav_vector() 11 0.003078 0.003782 0.005398 0.15% Castro::swap_state_time_levels() 10 0.003295 0.004518 0.005256 0.15% Amr::coarseTimeStep() 10 0.001428 0.002231 0.002828 0.08% Gravity::get_old_grav_vector() 10 0.001798 0.00228 0.002782 0.08% Castro::buildMetrics() 1 0.001583 0.001806 0.002335 0.07% Castro::finalize_do_advance() 10 0.0006532 0.001572 0.001963 0.06% Castro::expand_state() 10 0.0006394 0.0008418 0.001022 0.03% Amr::InitAmr() 1 0.0002691 0.0003531 0.0005083 0.01% Amr::timeStep() 10 0.0002091 0.000261 0.0004307 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002663 0.0002898 0.0003301 0.01% DistributionMapping::LeastUsedCPUs() 1 7.208e-06 0.0001961 0.000284 0.01% Castro::clean_state() 62 0.0001421 0.0001613 0.0001984 0.01% StateDataPhysBCFunct::() 41 9.405e-05 0.0001143 0.0001466 0.00% Castro::enforce_consistent_e() 1 7.627e-05 9.756e-05 0.0001433 0.00% Castro::finalize_advance() 10 7.582e-05 9.549e-05 0.0001143 0.00% FillPatchSingleLevel 41 6.753e-05 7.977e-05 0.0001047 0.00% FabArray::ParallelCopy() 41 6.44e-05 7.562e-05 9.589e-05 0.00% Castro::Castro() 1 5.731e-05 7.13e-05 9.095e-05 0.00% Castro::construct_old_source() 50 6.299e-05 7.184e-05 8.808e-05 0.00% Castro::advance() 10 3.754e-05 5.282e-05 8.08e-05 0.00% FabArrayBase::getCPC() 41 4.774e-05 6.144e-05 7.833e-05 0.00% Castro::do_new_sources() 10 5.39e-05 6.499e-05 7.674e-05 0.00% Amr::FinalizeInit() 1 3.636e-06 1.348e-05 7.54e-05 0.00% Amr::writeSmallPlotFile() 1 2.548e-05 6.447e-05 7.526e-05 0.00% Castro::do_old_sources() 10 5.082e-05 6.085e-05 6.592e-05 0.00% Castro::subcycle_advance_ctu() 10 3.854e-05 4.953e-05 6.067e-05 0.00% Castro::apply_source_to_state() 20 3.831e-05 4.666e-05 5.564e-05 0.00% Castro::construct_new_gravity() 10 3.69e-05 4.204e-05 4.76e-05 0.00% Castro::construct_old_gravity() 10 3.804e-05 4.208e-05 4.702e-05 0.00% Castro::enforce_speed_limit() 62 2.72e-05 3.189e-05 3.945e-05 0.00% Amr::defBaseLevel() 1 2.691e-05 3.016e-05 3.646e-05 0.00% FabArrayBase::CPC::define() 2 2.001e-05 2.448e-05 2.891e-05 0.00% Castro::check_for_nan() 20 2.244e-05 2.386e-05 2.679e-05 0.00% Castro::post_timestep() 10 1.412e-05 1.907e-05 2.265e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.834e-06 1.369e-05 1.951e-05 0.00% Amr::initSubcycle() 1 8.645e-06 1.115e-05 1.864e-05 0.00% Gravity::set_mass_offset() 10 9.686e-06 1.038e-05 1.175e-05 0.00% Gravity::swapTimeLevels() 10 9.021e-06 1.02e-05 1.107e-05 0.00% Castro::create_source_corrector() 10 8.053e-06 9.643e-06 1.067e-05 0.00% Amr::initialInit() 1 1.15e-06 2.486e-06 1.002e-05 0.00% Castro::FluxRegCrseInit 10 6.843e-06 8.507e-06 9.967e-06 0.00% Castro::computeNewDt() 9 7.499e-06 8.013e-06 9.295e-06 0.00% Castro::retry_advance_ctu() 10 5.1e-06 5.697e-06 6.598e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.574e-06 4.357e-06 5.025e-06 0.00% Amr::InitializeInit() 1 2.038e-06 2.732e-06 4.93e-06 0.00% Castro::computeInitialDt() 2 3.604e-06 4.039e-06 4.585e-06 0.00% Castro::post_init() 1 2.882e-06 3.569e-06 4.277e-06 0.00% Castro::post_regrid() 1 1.984e-06 2.923e-06 3.92e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.404e-06 3.168e-06 0.00% Amr::init() 1 1.846e-06 2.09e-06 2.323e-06 0.00% DistributionMapping::Distribute() 1 8.05e-07 9.989e-07 1.294e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.556 3.557 3.557 100.00% Amr::coarseTimeStep() 10 3.311 3.311 3.311 93.09% Amr::timeStep() 10 3.299 3.299 3.3 92.77% Castro::advance() 10 3.282 3.283 3.283 92.30% Castro::subcycle_advance_ctu() 10 3.202 3.209 3.22 90.52% Castro::do_advance_ctu() 10 3.202 3.209 3.22 90.52% Castro::construct_ctu_hydro_source() 10 2.297 2.348 2.398 67.42% Gravity::make_radial_gravity() 21 0.3294 0.345 0.355 9.98% Amr::init() 1 0.2286 0.2288 0.2288 6.43% Gravity::get_new_grav_vector() 11 0.2223 0.2241 0.226 6.35% Amr::initialInit() 1 0.2119 0.2122 0.2127 5.98% Castro::construct_old_gravity() 10 0.1923 0.2029 0.2116 5.95% Gravity::get_old_grav_vector() 10 0.1916 0.2022 0.2109 5.93% Castro::construct_new_gravity() 10 0.1957 0.197 0.1982 5.57% FillPatchIterator::Initialize 41 0.1509 0.1683 0.1858 5.22% Amr::InitializeInit() 1 0.06013 0.1093 0.181 5.09% Amr::defBaseLevel() 1 0.06012 0.1093 0.181 5.09% Castro::initialize_do_advance() 10 0.149 0.1627 0.171 4.81% Castro::initData() 1 0.0438 0.09102 0.1583 4.45% Amr::FinalizeInit() 1 0.03122 0.103 0.1518 4.27% FillPatchSingleLevel 41 0.1123 0.1247 0.1484 4.17% Castro::estTimeStep() 21 0.03328 0.1021 0.1423 4.00% Castro::expand_state() 10 0.09936 0.1151 0.1242 3.49% Castro::computeInitialDt() 2 0.002397 0.07433 0.1234 3.47% Castro::clean_state() 62 0.1162 0.1182 0.1198 3.37% FabArray::ParallelCopy() 41 0.07902 0.08853 0.116 3.26% FabArray::setVal() 143 0.05863 0.06792 0.07921 2.23% FabArray::ParallelCopy_finish() 41 0.03614 0.0469 0.07818 2.20% Castro::initialize_advance() 10 0.05847 0.07033 0.07724 2.17% amrex::Copy() 193 0.05958 0.06961 0.07614 2.14% Castro::do_new_sources() 10 0.06109 0.06703 0.07588 2.13% Castro::computeTemp() 63 0.06898 0.07071 0.07246 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04914 0.05059 0.05204 1.46% Castro::reset_internal_energy(Fab) 1008 0.04886 0.0503 0.05175 1.45% Castro::do_old_sources() 10 0.04056 0.04545 0.04663 1.31% FabArray::ParallelCopy_nowait() 41 0.03774 0.04156 0.04353 1.22% Castro::normalize_species() 62 0.04179 0.04221 0.04295 1.21% StateDataPhysBCFunct::() 41 0.03224 0.03606 0.04089 1.15% StateData::FillBoundary(geom) 41 0.0321 0.03594 0.04079 1.15% Castro::construct_new_source() 50 0.03005 0.03275 0.03703 1.04% Castro::construct_new_gravity_source() 10 0.02375 0.02647 0.03043 0.86% Gravity::interpolate_monopole_grav() 21 0.02832 0.02863 0.02904 0.82% Castro::post_init() 1 0.02792 0.0282 0.02847 0.80% Amr::writePlotFile() 2 0.02659 0.02703 0.02736 0.77% VisMF::Write(FabArray) 2 0.01365 0.01454 0.01745 0.49% Castro::post_timestep() 10 0.01563 0.01614 0.01671 0.47% Castro::apply_source_to_state() 20 0.01249 0.01394 0.01456 0.41% FabArray::Saxpy() 20 0.01244 0.01389 0.01451 0.41% Castro::Castro() 1 0.01059 0.0117 0.01447 0.41% Castro::check_for_nan() 20 0.01139 0.01213 0.01311 0.37% MultiFab::contains_nan() 20 0.01137 0.01211 0.01308 0.37% FabArray::setDomainBndry() 41 0.007808 0.01039 0.0118 0.33% Castro::construct_old_source() 50 0.00758 0.0103 0.0109 0.31% Castro::construct_old_gravity_source() 10 0.007517 0.01023 0.01083 0.30% Castro::initMFs() 1 0.006684 0.007773 0.0103 0.29% Castro::computeNewDt() 9 0.008452 0.008463 0.008473 0.24% AmrLevel::AmrLevel(dm) 1 0.005536 0.006317 0.008182 0.23% StateData::define() 4 0.005521 0.006303 0.008162 0.23% Castro::enforce_min_density() 62 0.005819 0.006155 0.006408 0.18% Castro::swap_state_time_levels() 10 0.003295 0.004518 0.005256 0.15% Castro::finalize_advance() 10 0.002931 0.00339 0.003826 0.11% Castro::buildMetrics() 1 0.001723 0.001973 0.002574 0.07% Castro::post_regrid() 1 0.001509 0.001653 0.001969 0.06% Castro::finalize_do_advance() 10 0.0006532 0.001572 0.001963 0.06% Amr::InitAmr() 1 0.0002783 0.0003642 0.000527 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.229e-05 0.0002015 0.00029 0.01% DistributionMapping::LeastUsedCPUs() 1 7.208e-06 0.0001961 0.000284 0.01% Castro::enforce_consistent_e() 1 7.627e-05 9.756e-05 0.0001433 0.00% FabArrayBase::getCPC() 41 6.972e-05 8.592e-05 0.000107 0.00% Amr::writeSmallPlotFile() 1 2.548e-05 6.447e-05 7.526e-05 0.00% Castro::enforce_speed_limit() 62 2.72e-05 3.189e-05 3.945e-05 0.00% FabArrayBase::CPC::define() 2 2.001e-05 2.448e-05 2.891e-05 0.00% Amr::initSubcycle() 1 8.645e-06 1.115e-05 1.864e-05 0.00% Gravity::set_mass_offset() 10 9.686e-06 1.038e-05 1.175e-05 0.00% Gravity::swapTimeLevels() 10 9.021e-06 1.02e-05 1.107e-05 0.00% Castro::create_source_corrector() 10 8.053e-06 9.643e-06 1.067e-05 0.00% Castro::FluxRegCrseInit 10 6.843e-06 8.507e-06 9.967e-06 0.00% Castro::retry_advance_ctu() 10 5.1e-06 5.697e-06 6.598e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.404e-06 3.168e-06 0.00% DistributionMapping::Distribute() 1 8.05e-07 9.989e-07 1.294e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 32 B 43 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 15 KiB 17 KiB 21 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-19-g1f7a2f52b84d) finalized