MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-34-g774f5443a770) initialized Starting run at 01:44:12 UTC on 2023-02-13. Successfully read inputs file ... Castro git describe: 23.01-42-g1a15bcb79 AMReX git describe: 23.02-34-g774f5443a Microphysics git describe: 23.02-9-gfebab1f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016106374 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357994346 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34154641 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334352751 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333829692 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361916306 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334429333 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314311169 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315518383 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313795639 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313543433 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.057679869 seconds Ending run at 01:44:16 UTC on 2023-02-13. Run time = 3.617769578 Run time without initialization = 3.386076625 Average number of zones advanced per microsecond: 0.774 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.616 ... 3.617 ... 3.618 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3321 2.3596 2.4131 66.70% Gravity::make_radial_gravity() 21 0.3167 0.3286 0.344 9.51% Castro::estTimeStep() 21 0.03582 0.1046 0.1608 4.45% Castro::initData() 1 0.03812 0.08645 0.156 4.31% Castro::do_advance_ctu() 10 0.01758 0.07533 0.1069 2.95% amrex::Copy() 193 0.05944 0.07171 0.07892 2.18% FabArray::setVal() 143 0.0591 0.06817 0.07892 2.18% FabArray::ParallelCopy_finish() 41 0.03373 0.04747 0.07625 2.11% Amr::writePlotFile() 2 0.0542 0.05742 0.05831 1.61% Castro::reset_internal_energy(Fab) 1008 0.04868 0.05024 0.05148 1.42% FabArray::ParallelCopy_nowait() 41 0.03717 0.04154 0.04332 1.20% Castro::normalize_species() 62 0.04135 0.04221 0.04307 1.19% StateData::FillBoundary(geom) 41 0.03387 0.03714 0.04178 1.15% FillPatchIterator::Initialize 41 0.02973 0.03321 0.03535 0.98% Castro::construct_new_gravity_source() 10 0.02362 0.02641 0.03015 0.83% Gravity::interpolate_monopole_grav() 21 0.02838 0.02877 0.02917 0.81% Castro::computeTemp() 63 0.0188 0.01992 0.02056 0.57% Castro::initialize_do_advance() 10 0.0128 0.017 0.0192 0.53% VisMF::Write(FabArray) 2 0.01323 0.01405 0.01703 0.47% FabArray::Saxpy() 20 0.01247 0.01386 0.01484 0.41% Castro::initialize_advance() 10 0.00408 0.01011 0.01353 0.37% MultiFab::contains_nan() 20 0.01018 0.01102 0.0119 0.33% FabArray::setDomainBndry() 41 0.007842 0.01041 0.01181 0.33% Castro::initMFs() 1 0.006858 0.007954 0.01095 0.30% Castro::construct_old_gravity_source() 10 0.007409 0.01014 0.01079 0.30% StateData::define() 4 0.005724 0.006402 0.008392 0.23% Castro::construct_new_source() 50 0.005752 0.006291 0.006646 0.18% main() 1 0.005143 0.005957 0.006533 0.18% Castro::enforce_min_density() 62 0.005697 0.006041 0.006337 0.18% Gravity::get_new_grav_vector() 11 0.003137 0.003769 0.005359 0.15% Castro::swap_state_time_levels() 10 0.003326 0.004438 0.004676 0.13% Gravity::get_old_grav_vector() 10 0.001761 0.002412 0.002818 0.08% Castro::buildMetrics() 1 0.001608 0.001814 0.002388 0.07% Amr::coarseTimeStep() 10 0.001419 0.001883 0.002237 0.06% Castro::finalize_do_advance() 10 0.0007607 0.001481 0.001713 0.05% Castro::expand_state() 10 0.0006675 0.0007771 0.0008537 0.02% Amr::InitAmr() 1 0.0002635 0.0003508 0.0006379 0.02% Amr::timeStep() 10 0.0001773 0.0002482 0.0004849 0.01% DistributionMapping::LeastUsedCPUs() 1 6.995e-06 0.0003378 0.0004273 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002856 0.0003031 0.0003211 0.01% Castro::clean_state() 62 0.0001361 0.0001561 0.0001729 0.00% Castro::enforce_consistent_e() 1 8.131e-05 9.733e-05 0.0001438 0.00% StateDataPhysBCFunct::() 41 8.576e-05 0.0001012 0.0001256 0.00% Castro::finalize_advance() 10 7.584e-05 9.635e-05 0.0001164 0.00% Castro::Castro() 1 6.246e-05 7.602e-05 8.768e-05 0.00% Castro::subcycle_advance_ctu() 10 4.018e-05 5.087e-05 8.745e-05 0.00% FabArray::ParallelCopy() 41 6.583e-05 7.372e-05 8.372e-05 0.00% Castro::construct_old_source() 50 4.532e-05 6.774e-05 7.77e-05 0.00% Amr::writeSmallPlotFile() 1 2.735e-05 5.906e-05 7.678e-05 0.00% FillPatchSingleLevel 41 6.487e-05 7.041e-05 7.543e-05 0.00% Amr::FinalizeInit() 1 4.029e-06 1.341e-05 7.058e-05 0.00% Castro::do_new_sources() 10 4.813e-05 6.067e-05 6.958e-05 0.00% Castro::do_old_sources() 10 4.031e-05 5.507e-05 6.305e-05 0.00% FabArrayBase::getCPC() 41 3.93e-05 4.856e-05 5.637e-05 0.00% Castro::apply_source_to_state() 20 2.954e-05 4.219e-05 5.087e-05 0.00% Amr::defBaseLevel() 1 3.049e-05 3.773e-05 4.897e-05 0.00% Castro::construct_old_gravity() 10 3.041e-05 4.036e-05 4.813e-05 0.00% Castro::advance() 10 3.355e-05 3.969e-05 4.569e-05 0.00% Castro::construct_new_gravity() 10 3.785e-05 4.024e-05 4.509e-05 0.00% Castro::post_timestep() 10 1.619e-05 2.356e-05 3.362e-05 0.00% Castro::enforce_speed_limit() 62 2.562e-05 2.933e-05 3.292e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.555e-05 3.037e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.537e-05 2.247e-05 2.93e-05 0.00% Castro::check_for_nan() 20 1.964e-05 2.18e-05 2.372e-05 0.00% Amr::initSubcycle() 1 9.045e-06 1.111e-05 1.679e-05 0.00% Castro::create_source_corrector() 10 7.62e-06 9.789e-06 1.243e-05 0.00% Gravity::swapTimeLevels() 10 8.468e-06 1.05e-05 1.152e-05 0.00% Gravity::set_mass_offset() 10 9.245e-06 1.009e-05 1.13e-05 0.00% Castro::FluxRegCrseInit 10 6.741e-06 8.53e-06 1.091e-05 0.00% Castro::computeNewDt() 9 7.378e-06 8.435e-06 9.178e-06 0.00% Amr::initialInit() 1 1.363e-06 4.25e-06 9.046e-06 0.00% Castro::retry_advance_ctu() 10 5.543e-06 6.106e-06 6.95e-06 0.00% Amr::InitializeInit() 1 2.187e-06 3.038e-06 6.95e-06 0.00% Castro::post_regrid() 1 2.258e-06 3.549e-06 6.891e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.806e-06 5.165e-06 6.298e-06 0.00% Castro::computeInitialDt() 2 2.815e-06 4.247e-06 6.196e-06 0.00% Castro::post_init() 1 2.975e-06 3.624e-06 5.182e-06 0.00% Castro::FluxRegFineAdd() 10 1.889e-06 2.451e-06 2.979e-06 0.00% Amr::init() 1 1.739e-06 2.134e-06 2.935e-06 0.00% DistributionMapping::Distribute() 1 8.83e-07 1.107e-06 1.354e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.616 3.617 3.618 100.00% Amr::coarseTimeStep() 10 3.322 3.322 3.322 91.82% Amr::timeStep() 10 3.31 3.31 3.311 91.52% Castro::advance() 10 3.294 3.294 3.295 91.07% Castro::subcycle_advance_ctu() 10 3.213 3.22 3.231 89.32% Castro::do_advance_ctu() 10 3.213 3.22 3.231 89.32% Castro::construct_ctu_hydro_source() 10 2.332 2.36 2.413 66.70% Gravity::make_radial_gravity() 21 0.3322 0.3452 0.3579 9.89% Amr::init() 1 0.2308 0.2312 0.2313 6.39% Gravity::get_new_grav_vector() 11 0.2243 0.2265 0.228 6.30% Amr::initialInit() 1 0.2144 0.2148 0.215 5.94% Castro::construct_old_gravity() 10 0.1938 0.2018 0.2124 5.87% Gravity::get_old_grav_vector() 10 0.1931 0.2011 0.2118 5.86% Castro::construct_new_gravity() 10 0.198 0.1996 0.2006 5.55% FillPatchIterator::Initialize 41 0.1573 0.1701 0.1851 5.12% Amr::InitializeInit() 1 0.05941 0.1096 0.184 5.09% Amr::defBaseLevel() 1 0.05941 0.1096 0.184 5.09% Castro::initialize_do_advance() 10 0.1565 0.1644 0.1713 4.73% Castro::estTimeStep() 21 0.03582 0.1046 0.1608 4.45% Castro::initData() 1 0.04217 0.09063 0.1602 4.43% Amr::FinalizeInit() 1 0.03047 0.1052 0.1554 4.29% FillPatchSingleLevel 41 0.1177 0.1265 0.1476 4.08% Castro::computeInitialDt() 2 0.002156 0.07677 0.127 3.51% Castro::expand_state() 10 0.1083 0.1172 0.1244 3.44% Castro::clean_state() 62 0.1155 0.1179 0.1196 3.31% FabArray::ParallelCopy() 41 0.07721 0.08916 0.1136 3.14% amrex::Copy() 193 0.05944 0.07171 0.07892 2.18% FabArray::setVal() 143 0.0591 0.06817 0.07892 2.18% Castro::initialize_advance() 10 0.05843 0.07052 0.07732 2.14% FabArray::ParallelCopy_finish() 41 0.03373 0.04747 0.07625 2.11% Castro::do_new_sources() 10 0.061 0.06708 0.07588 2.10% Amr::writePlotFile() 2 0.07403 0.07417 0.07429 2.05% Castro::computeTemp() 63 0.06872 0.07047 0.07233 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04897 0.05054 0.05176 1.43% Castro::reset_internal_energy(Fab) 1008 0.04868 0.05024 0.05148 1.42% Castro::do_old_sources() 10 0.04048 0.04496 0.0464 1.28% FabArray::ParallelCopy_nowait() 41 0.03723 0.04162 0.0434 1.20% Castro::normalize_species() 62 0.04135 0.04221 0.04307 1.19% StateDataPhysBCFunct::() 41 0.03396 0.03724 0.04186 1.16% StateData::FillBoundary(geom) 41 0.03387 0.03714 0.04178 1.15% Castro::construct_new_source() 50 0.02992 0.0327 0.03665 1.01% Castro::construct_new_gravity_source() 10 0.02362 0.02641 0.03015 0.83% Gravity::interpolate_monopole_grav() 21 0.02838 0.02877 0.02917 0.81% Castro::post_init() 1 0.02755 0.02792 0.0281 0.78% VisMF::Write(FabArray) 2 0.01323 0.01405 0.01703 0.47% Castro::post_timestep() 10 0.01567 0.01607 0.01676 0.46% Castro::Castro() 1 0.01099 0.01213 0.01519 0.42% Castro::apply_source_to_state() 20 0.0125 0.01391 0.01489 0.41% FabArray::Saxpy() 20 0.01247 0.01386 0.01484 0.41% Castro::check_for_nan() 20 0.0102 0.01104 0.01192 0.33% MultiFab::contains_nan() 20 0.01018 0.01102 0.0119 0.33% FabArray::setDomainBndry() 41 0.007842 0.01041 0.01181 0.33% Castro::initMFs() 1 0.006858 0.007954 0.01095 0.30% Castro::construct_old_source() 50 0.007454 0.01021 0.01086 0.30% Castro::construct_old_gravity_source() 10 0.007409 0.01014 0.01079 0.30% Castro::computeNewDt() 9 0.008501 0.008507 0.008512 0.24% AmrLevel::AmrLevel(dm) 1 0.005746 0.006425 0.008421 0.23% StateData::define() 4 0.005724 0.006402 0.008392 0.23% Castro::enforce_min_density() 62 0.005697 0.006041 0.006337 0.18% Castro::swap_state_time_levels() 10 0.003326 0.004438 0.004676 0.13% Castro::finalize_advance() 10 0.00307 0.003489 0.003941 0.11% Castro::buildMetrics() 1 0.001731 0.001962 0.002602 0.07% Castro::post_regrid() 1 0.001529 0.001657 0.001998 0.06% Castro::finalize_do_advance() 10 0.0007607 0.001481 0.001713 0.05% Amr::InitAmr() 1 0.0002729 0.0003619 0.0006531 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.23e-05 0.0003441 0.0004346 0.01% DistributionMapping::LeastUsedCPUs() 1 6.995e-06 0.0003378 0.0004273 0.01% Castro::enforce_consistent_e() 1 8.131e-05 9.733e-05 0.0001438 0.00% FabArrayBase::getCPC() 41 6.404e-05 7.411e-05 8.399e-05 0.00% Amr::writeSmallPlotFile() 1 2.735e-05 5.906e-05 7.678e-05 0.00% Castro::enforce_speed_limit() 62 2.562e-05 2.933e-05 3.292e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.555e-05 3.037e-05 0.00% Amr::initSubcycle() 1 9.045e-06 1.111e-05 1.679e-05 0.00% Castro::create_source_corrector() 10 7.62e-06 9.789e-06 1.243e-05 0.00% Gravity::swapTimeLevels() 10 8.468e-06 1.05e-05 1.152e-05 0.00% Gravity::set_mass_offset() 10 9.245e-06 1.009e-05 1.13e-05 0.00% Castro::FluxRegCrseInit 10 6.741e-06 8.53e-06 1.091e-05 0.00% Castro::retry_advance_ctu() 10 5.543e-06 6.106e-06 6.95e-06 0.00% Castro::FluxRegFineAdd() 10 1.889e-06 2.451e-06 2.979e-06 0.00% DistributionMapping::Distribute() 1 8.83e-07 1.107e-06 1.354e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 31 B 37 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 16 KiB 21 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-34-g774f5443a770) finalized