MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (23.02-34-g774f5443a770) initialized
Starting run at 22:41:27 UTC on 2023-02-12.
Successfully read inputs file ...
Castro git describe: 23.01-36-gfc251492d
AMReX git describe: 23.02-34-g774f5443a
Microphysics git describe: 23.02-9-gfebab1f7
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.015544723 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.361520698
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.351511754
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.331725688
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.330761543
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.351598573
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.340835301
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.312676991
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.313657025
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.314191825
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.313477349
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.010274679 seconds
Ending run at 22:41:31 UTC on 2023-02-12.
Run time = 3.521935335
Run time without initialization = 3.339588915
Average number of zones advanced per microsecond: 0.785
Average number of zones advanced per microsecond per rank: 0.098
TinyProfiler total time across processes [min...avg...max]: 3.521 ... 3.522 ... 3.522
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.2895 2.3479 2.3980 68.09%
Gravity::make_radial_gravity() 21 0.3131 0.3227 0.3377 9.59%
Castro::do_advance_ctu() 10 0.01844 0.07099 0.1297 3.68%
Castro::estTimeStep() 21 0.02714 0.07301 0.1187 3.37%
Castro::initData() 1 0.03834 0.07685 0.1152 3.27%
FabArray::setVal() 143 0.06565 0.07404 0.08606 2.44%
amrex::Copy() 193 0.06249 0.07248 0.08045 2.28%
FabArray::ParallelCopy_finish() 41 0.03739 0.05477 0.07838 2.23%
Castro::reset_internal_energy(Fab) 1008 0.04877 0.05004 0.05093 1.45%
Castro::normalize_species() 62 0.04179 0.04271 0.04393 1.25%
FabArray::ParallelCopy_nowait() 41 0.03516 0.04156 0.04392 1.25%
StateData::FillBoundary(geom) 41 0.03485 0.03669 0.03845 1.09%
FillPatchIterator::Initialize 41 0.02881 0.03334 0.03702 1.05%
Castro::construct_new_gravity_source() 10 0.02347 0.02745 0.03273 0.93%
Gravity::interpolate_monopole_grav() 21 0.02798 0.02905 0.03151 0.89%
Castro::initialize_do_advance() 10 0.01192 0.01728 0.0204 0.58%
Castro::computeTemp() 63 0.01958 0.02002 0.02032 0.58%
VisMF::Write(FabArray) 2 0.01348 0.01401 0.01649 0.47%
FabArray::Saxpy() 20 0.01232 0.01416 0.01509 0.43%
Castro::initialize_advance() 10 0.008326 0.01125 0.01406 0.40%
MultiFab::contains_nan() 20 0.01045 0.01122 0.01211 0.34%
FabArray::setDomainBndry() 41 0.007953 0.01023 0.01164 0.33%
Castro::construct_old_gravity_source() 10 0.007486 0.01015 0.01083 0.31%
Amr::writePlotFile() 2 0.006715 0.009459 0.01083 0.31%
Castro::initMFs() 1 0.006834 0.006876 0.006922 0.20%
Castro::construct_new_source() 50 0.005762 0.006311 0.006721 0.19%
main() 1 0.005239 0.006227 0.006653 0.19%
Castro::enforce_min_density() 62 0.00572 0.006005 0.006316 0.18%
StateData::define() 4 0.005748 0.005782 0.005825 0.17%
Castro::swap_state_time_levels() 10 0.003329 0.004351 0.004704 0.13%
Gravity::get_new_grav_vector() 11 0.002974 0.003659 0.003986 0.11%
Gravity::get_old_grav_vector() 10 0.001724 0.002412 0.002843 0.08%
Amr::coarseTimeStep() 10 0.001261 0.002058 0.002651 0.08%
Castro::finalize_do_advance() 10 0.000633 0.00153 0.001894 0.05%
Castro::buildMetrics() 1 0.00163 0.001651 0.001677 0.05%
Castro::expand_state() 10 0.0006499 0.0008656 0.001093 0.03%
Amr::timeStep() 10 0.0001725 0.0002544 0.0004719 0.01%
Amr::InitAmr() 1 0.0002857 0.0003177 0.0004167 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.000273 0.0002856 0.0002964 0.01%
Castro::clean_state() 62 0.0001341 0.0001482 0.0001563 0.00%
Castro::Castro() 1 8.6e-05 0.0001011 0.0001492 0.00%
DistributionMapping::LeastUsedCPUs() 1 7.034e-06 9.778e-05 0.0001228 0.00%
Castro::enforce_consistent_e() 1 8.132e-05 9.12e-05 0.0001181 0.00%
Amr::writeSmallPlotFile() 1 3.195e-05 6.648e-05 0.0001068 0.00%
Castro::finalize_advance() 10 7.56e-05 9.255e-05 0.0001043 0.00%
StateDataPhysBCFunct::() 41 7.723e-05 8.729e-05 9.995e-05 0.00%
FabArray::ParallelCopy() 41 6.952e-05 7.953e-05 8.753e-05 0.00%
Castro::construct_old_source() 50 4.181e-05 6.616e-05 8.156e-05 0.00%
FillPatchSingleLevel 41 6.074e-05 7.145e-05 7.999e-05 0.00%
Castro::do_old_sources() 10 4.321e-05 6.09e-05 7.681e-05 0.00%
Castro::do_new_sources() 10 5.065e-05 6.236e-05 7.546e-05 0.00%
Amr::FinalizeInit() 1 4.332e-06 1.26e-05 6.781e-05 0.00%
Amr::defBaseLevel() 1 3.141e-05 4.475e-05 6.399e-05 0.00%
FabArrayBase::getCPC() 41 3.95e-05 4.956e-05 5.919e-05 0.00%
Castro::subcycle_advance_ctu() 10 3.777e-05 4.569e-05 5.744e-05 0.00%
Castro::construct_new_gravity() 10 3.371e-05 4.228e-05 5.477e-05 0.00%
Castro::apply_source_to_state() 20 2.947e-05 4.254e-05 5.204e-05 0.00%
Castro::construct_old_gravity() 10 3.336e-05 4.248e-05 4.961e-05 0.00%
Castro::post_timestep() 10 1.714e-05 2.828e-05 4.145e-05 0.00%
Castro::advance() 10 3.395e-05 3.776e-05 4.034e-05 0.00%
Castro::computeNewDt() 9 7.667e-06 1.692e-05 3.967e-05 0.00%
Castro::enforce_speed_limit() 62 2.447e-05 2.79e-05 3.013e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.69e-05 2.075e-05 2.666e-05 0.00%
FabArrayBase::CPC::define() 2 2.104e-05 2.318e-05 2.563e-05 0.00%
Castro::check_for_nan() 20 1.895e-05 2.063e-05 2.488e-05 0.00%
Amr::initSubcycle() 1 8.987e-06 1.074e-05 1.971e-05 0.00%
Gravity::set_mass_offset() 10 8.687e-06 1.1e-05 1.515e-05 0.00%
Gravity::swapTimeLevels() 10 7.499e-06 1.223e-05 1.453e-05 0.00%
Castro::create_source_corrector() 10 6.525e-06 9.441e-06 1.093e-05 0.00%
Castro::FluxRegCrseInit 10 7.212e-06 8.526e-06 9.583e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.52e-06 4.922e-06 9.219e-06 0.00%
Amr::initialInit() 1 1.14e-06 3.097e-06 8.446e-06 0.00%
Castro::retry_advance_ctu() 10 5.048e-06 5.616e-06 6.088e-06 0.00%
Castro::post_init() 1 3.31e-06 3.903e-06 5.361e-06 0.00%
Castro::computeInitialDt() 2 3.391e-06 4.039e-06 4.754e-06 0.00%
Castro::post_regrid() 1 2.025e-06 2.963e-06 4.533e-06 0.00%
Amr::InitializeInit() 1 1.988e-06 2.679e-06 4.31e-06 0.00%
Castro::FluxRegFineAdd() 10 2.127e-06 2.465e-06 2.905e-06 0.00%
Amr::init() 1 1.873e-06 2.062e-06 2.223e-06 0.00%
DistributionMapping::Distribute() 1 8.15e-07 1.023e-06 1.227e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.521 3.522 3.522 100.00%
Amr::coarseTimeStep() 10 3.323 3.323 3.323 94.34%
Amr::timeStep() 10 3.311 3.311 3.312 94.03%
Castro::advance() 10 3.294 3.295 3.296 93.57%
Castro::subcycle_advance_ctu() 10 3.207 3.215 3.222 91.49%
Castro::do_advance_ctu() 10 3.207 3.215 3.222 91.49%
Castro::construct_ctu_hydro_source() 10 2.29 2.348 2.398 68.09%
Gravity::make_radial_gravity() 21 0.3299 0.3397 0.3527 10.01%
Gravity::get_new_grav_vector() 11 0.2259 0.227 0.2276 6.46%
Castro::construct_old_gravity() 10 0.1935 0.2005 0.211 5.99%
Gravity::get_old_grav_vector() 10 0.1923 0.1996 0.2104 5.97%
Castro::construct_new_gravity() 10 0.2015 0.2022 0.2029 5.76%
FillPatchIterator::Initialize 41 0.1633 0.1769 0.1864 5.29%
Amr::init() 1 0.1818 0.1819 0.1819 5.16%
Castro::initialize_do_advance() 10 0.1566 0.1677 0.1764 5.01%
Amr::initialInit() 1 0.1657 0.166 0.1662 4.72%
FillPatchSingleLevel 41 0.1164 0.1333 0.1489 4.23%
Amr::InitializeInit() 1 0.06019 0.09876 0.1373 3.90%
Amr::defBaseLevel() 1 0.06018 0.09876 0.1373 3.90%
Castro::expand_state() 10 0.107 0.1201 0.1292 3.67%
Castro::clean_state() 62 0.1165 0.1183 0.1209 3.43%
Castro::initData() 1 0.04253 0.08102 0.1195 3.39%
Castro::estTimeStep() 21 0.02714 0.07301 0.1187 3.37%
FabArray::ParallelCopy() 41 0.08055 0.09648 0.1137 3.23%
Amr::FinalizeInit() 1 0.02838 0.06721 0.1058 3.01%
FabArray::setVal() 143 0.06565 0.07404 0.08606 2.44%
Castro::initialize_advance() 10 0.06886 0.07587 0.08463 2.40%
Castro::do_new_sources() 10 0.06055 0.06896 0.08099 2.30%
amrex::Copy() 193 0.06249 0.07248 0.08045 2.28%
Castro::computeInitialDt() 2 0.002399 0.04093 0.07953 2.26%
FabArray::ParallelCopy_finish() 41 0.03739 0.05477 0.07838 2.23%
Castro::computeTemp() 63 0.06904 0.07035 0.07134 2.03%
Castro::reset_internal_energy(MultiFab) 63 0.04906 0.05033 0.05122 1.45%
Castro::reset_internal_energy(Fab) 1008 0.04877 0.05004 0.05093 1.45%
Castro::do_old_sources() 10 0.04044 0.04531 0.04669 1.33%
FabArray::ParallelCopy_nowait() 41 0.03522 0.04163 0.04399 1.25%
Castro::normalize_species() 62 0.04179 0.04271 0.04393 1.25%
Castro::construct_new_source() 50 0.02952 0.03376 0.03944 1.12%
StateDataPhysBCFunct::() 41 0.03494 0.03677 0.03855 1.09%
StateData::FillBoundary(geom) 41 0.03485 0.03669 0.03845 1.09%
Castro::construct_new_gravity_source() 10 0.02347 0.02745 0.03273 0.93%
Gravity::interpolate_monopole_grav() 21 0.02798 0.02905 0.03151 0.89%
Amr::writePlotFile() 2 0.02605 0.02625 0.02655 0.75%
Castro::post_init() 1 0.02546 0.02573 0.02598 0.74%
Castro::post_timestep() 10 0.01593 0.01627 0.0166 0.47%
VisMF::Write(FabArray) 2 0.01348 0.01401 0.01649 0.47%
Castro::apply_source_to_state() 20 0.01235 0.0142 0.01514 0.43%
FabArray::Saxpy() 20 0.01232 0.01416 0.01509 0.43%
Castro::check_for_nan() 20 0.01047 0.01124 0.01213 0.34%
MultiFab::contains_nan() 20 0.01045 0.01122 0.01211 0.34%
Castro::Castro() 1 0.01165 0.01179 0.01204 0.34%
FabArray::setDomainBndry() 41 0.007953 0.01023 0.01164 0.33%
Castro::construct_old_source() 50 0.007527 0.01021 0.01091 0.31%
Castro::construct_old_gravity_source() 10 0.007486 0.01015 0.01083 0.31%
Castro::computeNewDt() 9 0.00842 0.00848 0.008522 0.24%
Castro::initMFs() 1 0.006834 0.006876 0.006922 0.20%
Castro::enforce_min_density() 62 0.00572 0.006005 0.006316 0.18%
AmrLevel::AmrLevel(dm) 1 0.005765 0.005803 0.005842 0.17%
StateData::define() 4 0.005748 0.005782 0.005825 0.17%
Castro::swap_state_time_levels() 10 0.003329 0.004351 0.004704 0.13%
Castro::finalize_advance() 10 0.002923 0.003697 0.004463 0.13%
Castro::finalize_do_advance() 10 0.000633 0.00153 0.001894 0.05%
Castro::buildMetrics() 1 0.00177 0.001794 0.001819 0.05%
Castro::post_regrid() 1 0.001556 0.001622 0.00168 0.05%
Amr::InitAmr() 1 0.0002947 0.0003285 0.0004258 0.01%
DistributionMapping::SFCProcessorMapDoIt() 1 1.142e-05 0.0001037 0.000133 0.00%
DistributionMapping::LeastUsedCPUs() 1 7.034e-06 9.778e-05 0.0001228 0.00%
Castro::enforce_consistent_e() 1 8.132e-05 9.12e-05 0.0001181 0.00%
Amr::writeSmallPlotFile() 1 3.195e-05 6.648e-05 0.0001068 0.00%
FabArrayBase::getCPC() 41 6.161e-05 7.274e-05 8.207e-05 0.00%
Castro::enforce_speed_limit() 62 2.447e-05 2.79e-05 3.013e-05 0.00%
FabArrayBase::CPC::define() 2 2.104e-05 2.318e-05 2.563e-05 0.00%
Amr::initSubcycle() 1 8.987e-06 1.074e-05 1.971e-05 0.00%
Gravity::set_mass_offset() 10 8.687e-06 1.1e-05 1.515e-05 0.00%
Gravity::swapTimeLevels() 10 7.499e-06 1.223e-05 1.453e-05 0.00%
Castro::create_source_corrector() 10 6.525e-06 9.441e-06 1.093e-05 0.00%
Castro::FluxRegCrseInit 10 7.212e-06 8.526e-06 9.583e-06 0.00%
Castro::retry_advance_ctu() 10 5.048e-06 5.616e-06 6.088e-06 0.00%
Castro::FluxRegFineAdd() 10 2.127e-06 2.465e-06 2.905e-06 0.00%
DistributionMapping::Distribute() 1 8.15e-07 1.023e-06 1.227e-06 0.00%
-------------------------------------------------------------------------------------------
Cpu (amrex_mempool) Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize() 8 8 28 B 30 B 37 B 8192 KiB 8192 KiB 8192 KiB
amrex_mempool_init() 8 8 15 KiB 15 KiB 17 KiB 8192 KiB 8192 KiB 8192 KiB
---------------------------------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
AMReX (23.02-34-g774f5443a770) finalized