MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-34-g774f5443a770) initialized Starting run at 06:41:00 UTC on 2023-02-13. Successfully read inputs file ... Castro git describe: 23.01-36-gfc251492d AMReX git describe: 23.02-34-g774f5443a Microphysics git describe: 23.02-9-gfebab1f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01626055 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358366789 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.403997908 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331545097 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332304928 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.366218853 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.375815337 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315184567 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31617093 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315692289 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314830079 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010814953 seconds Ending run at 06:41:03 UTC on 2023-02-13. Run time = 3.691757392 Run time without initialization = 3.448425603 Average number of zones advanced per microsecond: 0.760 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.69 ... 3.691 ... 3.692 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3295 2.3725 2.4627 66.71% Gravity::make_radial_gravity() 21 0.3477 0.3561 0.3616 9.79% Castro::do_advance_ctu() 10 0.05424 0.1441 0.1869 5.06% Castro::initData() 1 0.03822 0.09739 0.1587 4.30% Castro::estTimeStep() 21 0.0378 0.09741 0.1545 4.19% FabArray::setVal() 143 0.06251 0.069 0.07818 2.12% amrex::Copy() 193 0.06218 0.07066 0.07759 2.10% FabArray::ParallelCopy_finish() 41 0.03658 0.04934 0.0744 2.02% Castro::reset_internal_energy(Fab) 1008 0.04948 0.05116 0.05323 1.44% Castro::normalize_species() 62 0.04146 0.04273 0.04462 1.21% FabArray::ParallelCopy_nowait() 41 0.03789 0.04202 0.04327 1.17% StateData::FillBoundary(geom) 41 0.03551 0.03757 0.03987 1.08% FillPatchIterator::Initialize 41 0.02994 0.03341 0.03552 0.96% Castro::construct_new_gravity_source() 10 0.02345 0.02669 0.03077 0.83% Gravity::interpolate_monopole_grav() 21 0.02779 0.02829 0.02887 0.78% Castro::computeTemp() 63 0.02009 0.02048 0.02099 0.57% Castro::initialize_do_advance() 10 0.01255 0.01685 0.01799 0.49% VisMF::Write(FabArray) 2 0.01377 0.01445 0.01738 0.47% FabArray::Saxpy() 20 0.01213 0.01363 0.01517 0.41% Castro::initialize_advance() 10 0.008373 0.01126 0.01428 0.39% MultiFab::contains_nan() 20 0.01058 0.0117 0.01364 0.37% FabArray::setDomainBndry() 41 0.008046 0.01027 0.01176 0.32% Amr::writePlotFile() 2 0.007044 0.01031 0.01123 0.30% Castro::construct_old_gravity_source() 10 0.008215 0.01031 0.01107 0.30% Castro::initMFs() 1 0.006822 0.008582 0.0101 0.27% StateData::define() 4 0.005672 0.007039 0.008271 0.22% Castro::construct_new_source() 50 0.005809 0.006261 0.006774 0.18% main() 1 0.005339 0.006329 0.006751 0.18% Castro::enforce_min_density() 62 0.005846 0.006066 0.006344 0.17% Castro::swap_state_time_levels() 10 0.003367 0.004513 0.004765 0.13% Gravity::get_new_grav_vector() 11 0.003272 0.003769 0.004244 0.11% Gravity::get_old_grav_vector() 10 0.001759 0.002252 0.002568 0.07% Castro::buildMetrics() 1 0.001602 0.002004 0.002388 0.06% Amr::coarseTimeStep() 10 0.001528 0.00203 0.002372 0.06% Castro::finalize_do_advance() 10 0.0006563 0.001391 0.001624 0.04% Castro::expand_state() 10 0.0007722 0.0009218 0.001084 0.03% Amr::InitAmr() 1 0.0002942 0.0004223 0.0006562 0.02% Amr::timeStep() 10 0.0001605 0.0002548 0.0005643 0.02% DistributionMapping::LeastUsedCPUs() 1 9.103e-06 0.000278 0.0004278 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002707 0.0002911 0.0003071 0.01% Castro::clean_state() 62 0.0001395 0.0001534 0.0001643 0.00% Castro::enforce_consistent_e() 1 7.936e-05 0.0001051 0.0001407 0.00% Castro::finalize_advance() 10 8.038e-05 0.0001041 0.0001351 0.00% StateDataPhysBCFunct::() 41 7.947e-05 8.796e-05 0.0001027 0.00% Castro::Castro() 1 5.399e-05 7.412e-05 9.11e-05 0.00% FillPatchSingleLevel 41 6.53e-05 7.34e-05 8.209e-05 0.00% FabArray::ParallelCopy() 41 6.806e-05 7.303e-05 7.997e-05 0.00% Castro::construct_old_source() 50 4.195e-05 6.756e-05 7.581e-05 0.00% Amr::writeSmallPlotFile() 1 3.162e-05 4.413e-05 7.417e-05 0.00% Amr::FinalizeInit() 1 4.173e-06 1.362e-05 7.4e-05 0.00% Castro::do_new_sources() 10 5.049e-05 6.254e-05 6.977e-05 0.00% Castro::do_old_sources() 10 5.119e-05 5.924e-05 6.571e-05 0.00% Castro::subcycle_advance_ctu() 10 3.621e-05 4.447e-05 5.464e-05 0.00% Castro::advance() 10 2.997e-05 3.982e-05 5.276e-05 0.00% FabArrayBase::getCPC() 41 4.164e-05 4.7e-05 5.161e-05 0.00% Castro::apply_source_to_state() 20 3.677e-05 4.307e-05 5.072e-05 0.00% Amr::defBaseLevel() 1 2.679e-05 3.72e-05 5.054e-05 0.00% Castro::construct_new_gravity() 10 3.38e-05 3.979e-05 4.614e-05 0.00% Castro::construct_old_gravity() 10 2.917e-05 3.885e-05 4.569e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 3.148e-05 4.378e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.556e-05 2.479e-05 2.998e-05 0.00% Castro::post_timestep() 10 1.64e-05 2.043e-05 2.991e-05 0.00% Castro::check_for_nan() 20 1.856e-05 2.268e-05 2.763e-05 0.00% FabArrayBase::CPC::define() 2 2.194e-05 2.452e-05 2.699e-05 0.00% Amr::initSubcycle() 1 9.046e-06 1.289e-05 1.679e-05 0.00% Gravity::swapTimeLevels() 10 8.394e-06 1.038e-05 1.259e-05 0.00% Gravity::set_mass_offset() 10 9.052e-06 1.042e-05 1.215e-05 0.00% Castro::create_source_corrector() 10 8.657e-06 9.743e-06 1.211e-05 0.00% Castro::computeNewDt() 9 7.246e-06 8.362e-06 9.416e-06 0.00% Castro::FluxRegCrseInit 10 6.912e-06 8.44e-06 9.309e-06 0.00% Castro::post_init() 1 3.412e-06 5.182e-06 9.014e-06 0.00% Amr::initialInit() 1 9.78e-07 2.427e-06 8.228e-06 0.00% Amr::init() 1 1.594e-06 2.777e-06 8.083e-06 0.00% Amr::InitializeInit() 1 2.159e-06 3.322e-06 7.546e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.839e-06 4.702e-06 6.99e-06 0.00% Castro::retry_advance_ctu() 10 4.582e-06 5.384e-06 6.2e-06 0.00% Castro::post_regrid() 1 2.343e-06 3.434e-06 5.179e-06 0.00% Castro::computeInitialDt() 2 3.333e-06 4.241e-06 4.99e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.507e-06 2.88e-06 0.00% DistributionMapping::Distribute() 1 1.046e-06 1.284e-06 1.548e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.69 3.691 3.692 100.00% Amr::coarseTimeStep() 10 3.431 3.431 3.431 92.93% Amr::timeStep() 10 3.419 3.419 3.42 92.63% Castro::advance() 10 3.402 3.403 3.404 92.20% Castro::subcycle_advance_ctu() 10 3.317 3.325 3.33 90.21% Castro::do_advance_ctu() 10 3.317 3.325 3.33 90.21% Castro::construct_ctu_hydro_source() 10 2.33 2.373 2.463 66.71% Gravity::make_radial_gravity() 21 0.3637 0.372 0.3777 10.23% Amr::init() 1 0.2425 0.2428 0.2429 6.58% Gravity::get_new_grav_vector() 11 0.2373 0.2386 0.2407 6.52% Amr::initialInit() 1 0.2256 0.2261 0.2264 6.13% Castro::construct_old_gravity() 10 0.2094 0.2172 0.2215 6.00% Gravity::get_old_grav_vector() 10 0.2088 0.2166 0.2208 5.98% Castro::construct_new_gravity() 10 0.2034 0.2042 0.2053 5.56% FillPatchIterator::Initialize 41 0.1583 0.1729 0.1894 5.13% Amr::InitializeInit() 1 0.05828 0.1218 0.1869 5.06% Amr::defBaseLevel() 1 0.05828 0.1218 0.1869 5.06% Castro::initialize_do_advance() 10 0.1561 0.1637 0.1689 4.57% Amr::FinalizeInit() 1 0.03873 0.1043 0.1681 4.55% Castro::initData() 1 0.04186 0.1019 0.164 4.44% Castro::estTimeStep() 21 0.0378 0.09741 0.1545 4.19% FillPatchSingleLevel 41 0.1175 0.1292 0.1513 4.10% Castro::computeInitialDt() 2 0.002783 0.0679 0.1316 3.57% Castro::expand_state() 10 0.1084 0.116 0.1227 3.32% Castro::clean_state() 62 0.1172 0.1197 0.1227 3.32% FabArray::ParallelCopy() 41 0.08 0.0915 0.1124 3.05% Castro::initialize_advance() 10 0.06824 0.07396 0.08208 2.22% FabArray::setVal() 143 0.06251 0.069 0.07818 2.12% amrex::Copy() 193 0.06218 0.07066 0.07759 2.10% FabArray::ParallelCopy_finish() 41 0.03658 0.04934 0.0744 2.02% Castro::do_new_sources() 10 0.06083 0.06583 0.07398 2.00% Castro::computeTemp() 63 0.06984 0.07193 0.07391 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04975 0.05145 0.05353 1.45% Castro::reset_internal_energy(Fab) 1008 0.04948 0.05116 0.05323 1.44% Castro::do_old_sources() 10 0.04205 0.04561 0.04906 1.33% Castro::normalize_species() 62 0.04146 0.04273 0.04462 1.21% FabArray::ParallelCopy_nowait() 41 0.03796 0.04209 0.04334 1.17% StateDataPhysBCFunct::() 41 0.03559 0.03766 0.03995 1.08% StateData::FillBoundary(geom) 41 0.03551 0.03757 0.03987 1.08% Castro::construct_new_source() 50 0.02961 0.03296 0.03754 1.02% Castro::post_init() 1 0.03436 0.03537 0.03617 0.98% Castro::construct_new_gravity_source() 10 0.02345 0.02669 0.03077 0.83% Gravity::interpolate_monopole_grav() 21 0.02779 0.02829 0.02887 0.78% Amr::writePlotFile() 2 0.02714 0.02756 0.02796 0.76% VisMF::Write(FabArray) 2 0.01377 0.01445 0.01738 0.47% Castro::post_timestep() 10 0.01554 0.01601 0.01651 0.45% Castro::apply_source_to_state() 20 0.01217 0.01367 0.01522 0.41% FabArray::Saxpy() 20 0.01213 0.01363 0.01517 0.41% Castro::Castro() 1 0.01019 0.01257 0.01485 0.40% Castro::check_for_nan() 20 0.0106 0.01172 0.01367 0.37% MultiFab::contains_nan() 20 0.01058 0.0117 0.01364 0.37% FabArray::setDomainBndry() 41 0.008046 0.01027 0.01176 0.32% Castro::construct_old_source() 50 0.008257 0.01038 0.01113 0.30% Castro::construct_old_gravity_source() 10 0.008215 0.01031 0.01107 0.30% Castro::initMFs() 1 0.006822 0.008582 0.0101 0.27% Castro::computeNewDt() 9 0.008537 0.008545 0.008555 0.23% AmrLevel::AmrLevel(dm) 1 0.005696 0.007064 0.0083 0.22% StateData::define() 4 0.005672 0.007039 0.008271 0.22% Castro::enforce_min_density() 62 0.005846 0.006066 0.006344 0.17% Castro::swap_state_time_levels() 10 0.003367 0.004513 0.004765 0.13% Castro::finalize_advance() 10 0.002959 0.003582 0.004204 0.11% Castro::post_regrid() 1 0.001558 0.002224 0.002895 0.08% Castro::buildMetrics() 1 0.00173 0.002186 0.002623 0.07% Castro::finalize_do_advance() 10 0.0006563 0.001391 0.001624 0.04% Amr::InitAmr() 1 0.0003033 0.0004352 0.0006723 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.421e-05 0.000284 0.0004355 0.01% DistributionMapping::LeastUsedCPUs() 1 9.103e-06 0.000278 0.0004278 0.01% Castro::enforce_consistent_e() 1 7.936e-05 0.0001051 0.0001407 0.00% FabArrayBase::getCPC() 41 6.741e-05 7.152e-05 7.699e-05 0.00% Amr::writeSmallPlotFile() 1 3.162e-05 4.413e-05 7.417e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 3.148e-05 4.378e-05 0.00% FabArrayBase::CPC::define() 2 2.194e-05 2.452e-05 2.699e-05 0.00% Amr::initSubcycle() 1 9.046e-06 1.289e-05 1.679e-05 0.00% Gravity::swapTimeLevels() 10 8.394e-06 1.038e-05 1.259e-05 0.00% Gravity::set_mass_offset() 10 9.052e-06 1.042e-05 1.215e-05 0.00% Castro::create_source_corrector() 10 8.657e-06 9.743e-06 1.211e-05 0.00% Castro::FluxRegCrseInit 10 6.912e-06 8.44e-06 9.309e-06 0.00% Castro::retry_advance_ctu() 10 4.582e-06 5.384e-06 6.2e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.507e-06 2.88e-06 0.00% DistributionMapping::Distribute() 1 1.046e-06 1.284e-06 1.548e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 18 KiB 21 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-34-g774f5443a770) finalized