MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-37-gcbe2b291d3ed) initialized Starting run at 06:41:38 UTC on 2023-02-14. Successfully read inputs file ... Castro git describe: 23.01-36-gfc251492d AMReX git describe: 23.02-37-gcbe2b291d Microphysics git describe: 23.02-12-g44953037 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016718058 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369666976 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338640792 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340531362 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329889823 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.349574709 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341683193 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.3132469 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312208728 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312567965 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312744533 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010607846 seconds Ending run at 06:41:41 UTC on 2023-02-14. Run time = 3.522209008 Run time without initialization = 3.33863496 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.521 ... 3.522 ... 3.522 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3083 2.3502 2.3754 67.44% Gravity::make_radial_gravity() 21 0.3142 0.3246 0.3343 9.49% Castro::initData() 1 0.03907 0.07895 0.1138 3.23% Castro::do_advance_ctu() 10 0.04181 0.06926 0.1126 3.20% Castro::estTimeStep() 21 0.02244 0.06702 0.105 2.98% FabArray::setVal() 143 0.06512 0.07384 0.08693 2.47% amrex::Copy() 193 0.06538 0.07216 0.0786 2.23% FabArray::ParallelCopy_finish() 41 0.03536 0.05259 0.06975 1.98% Castro::reset_internal_energy(Fab) 1008 0.04896 0.04993 0.0509 1.45% FabArray::ParallelCopy_nowait() 41 0.03658 0.04163 0.04394 1.25% Castro::normalize_species() 62 0.04137 0.04243 0.04323 1.23% StateData::FillBoundary(geom) 41 0.03328 0.03656 0.03951 1.12% FillPatchIterator::Initialize 41 0.02902 0.03359 0.03733 1.06% Castro::construct_new_gravity_source() 10 0.02342 0.02743 0.03244 0.92% Gravity::interpolate_monopole_grav() 21 0.02795 0.02856 0.03034 0.86% Castro::initialize_do_advance() 10 0.0119 0.01759 0.02104 0.60% Castro::computeTemp() 63 0.01931 0.02 0.02056 0.58% VisMF::Write(FabArray) 2 0.01359 0.01425 0.01732 0.49% FabArray::Saxpy() 20 0.01397 0.01474 0.01574 0.45% Castro::initialize_advance() 10 0.00963 0.01202 0.01451 0.41% MultiFab::contains_nan() 20 0.01078 0.01149 0.01217 0.35% FabArray::setDomainBndry() 41 0.007778 0.01032 0.01173 0.33% Amr::writePlotFile() 2 0.007585 0.01059 0.01161 0.33% Castro::construct_old_gravity_source() 10 0.00737 0.01031 0.01095 0.31% Castro::initMFs() 1 0.006992 0.00745 0.008421 0.24% StateData::define() 4 0.005726 0.00606 0.006781 0.19% main() 1 0.005432 0.006162 0.0066 0.19% Castro::construct_new_source() 50 0.005931 0.006253 0.006504 0.18% Castro::enforce_min_density() 62 0.005662 0.00598 0.006318 0.18% Castro::swap_state_time_levels() 10 0.003839 0.004719 0.004926 0.14% Gravity::get_new_grav_vector() 11 0.003065 0.003631 0.004047 0.11% Amr::coarseTimeStep() 10 0.001542 0.002233 0.00273 0.08% Gravity::get_old_grav_vector() 10 0.001819 0.00231 0.002695 0.08% Castro::buildMetrics() 1 0.001632 0.001729 0.001903 0.05% Castro::finalize_do_advance() 10 0.0006488 0.001523 0.001883 0.05% Castro::expand_state() 10 0.0006346 0.0009055 0.001192 0.03% Amr::InitAmr() 1 0.0002674 0.0003672 0.0007125 0.02% DistributionMapping::LeastUsedCPUs() 1 1.036e-05 0.000413 0.0005152 0.01% Amr::timeStep() 10 0.0001769 0.0002576 0.000498 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002717 0.0002888 0.000313 0.01% Castro::clean_state() 62 0.0001452 0.0001558 0.0001698 0.00% Castro::finalize_advance() 10 8.31e-05 9.818e-05 0.0001097 0.00% Castro::enforce_consistent_e() 1 8.052e-05 8.68e-05 9.719e-05 0.00% StateDataPhysBCFunct::() 41 8.369e-05 9.06e-05 9.67e-05 0.00% Castro::construct_old_source() 50 5.427e-05 7.179e-05 9.506e-05 0.00% Castro::Castro() 1 5.747e-05 7.115e-05 9.142e-05 0.00% FillPatchSingleLevel 41 6.612e-05 7.586e-05 9.14e-05 0.00% Amr::FinalizeInit() 1 4.054e-06 1.402e-05 8.175e-05 0.00% FabArray::ParallelCopy() 41 7.035e-05 7.544e-05 7.951e-05 0.00% Amr::writeSmallPlotFile() 1 2.557e-05 6.784e-05 7.849e-05 0.00% Castro::do_old_sources() 10 4.999e-05 6.072e-05 7.305e-05 0.00% Castro::do_new_sources() 10 5.598e-05 6.215e-05 7.207e-05 0.00% Castro::subcycle_advance_ctu() 10 4.215e-05 4.766e-05 6.612e-05 0.00% FabArrayBase::getCPC() 41 4.093e-05 5.243e-05 6.114e-05 0.00% Castro::advance() 10 3.64e-05 4.383e-05 5.851e-05 0.00% Castro::construct_old_gravity() 10 3.761e-05 4.11e-05 5.245e-05 0.00% Castro::apply_source_to_state() 20 3.612e-05 4.367e-05 5.085e-05 0.00% Castro::construct_new_gravity() 10 3.487e-05 3.993e-05 5.021e-05 0.00% Amr::initSubcycle() 1 8.98e-06 1.439e-05 4.712e-05 0.00% Amr::defBaseLevel() 1 2.748e-05 3.496e-05 4.612e-05 0.00% Castro::post_timestep() 10 2.033e-05 3.407e-05 4.07e-05 0.00% Castro::enforce_speed_limit() 62 2.543e-05 2.976e-05 3.216e-05 0.00% FabArrayBase::CPC::define() 2 2.112e-05 2.445e-05 2.982e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.87e-05 2.385e-05 2.85e-05 0.00% Castro::check_for_nan() 20 1.961e-05 2.151e-05 2.468e-05 0.00% Gravity::swapTimeLevels() 10 7.434e-06 1.121e-05 1.319e-05 0.00% Gravity::set_mass_offset() 10 8.655e-06 1.028e-05 1.285e-05 0.00% Castro::create_source_corrector() 10 7.241e-06 9.549e-06 1.24e-05 0.00% Castro::computeNewDt() 9 7.976e-06 9.227e-06 1.014e-05 0.00% Castro::FluxRegCrseInit 10 7.076e-06 8.451e-06 9.579e-06 0.00% Amr::initialInit() 1 1.01e-06 2.223e-06 7.757e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.866e-06 5.307e-06 6.915e-06 0.00% Castro::retry_advance_ctu() 10 4.372e-06 5.205e-06 6.021e-06 0.00% Amr::InitializeInit() 1 2.085e-06 3.12e-06 5.556e-06 0.00% Castro::post_init() 1 3.105e-06 3.606e-06 4.54e-06 0.00% Castro::computeInitialDt() 2 3.584e-06 4e-06 4.317e-06 0.00% Castro::post_regrid() 1 1.918e-06 3.044e-06 3.997e-06 0.00% Castro::FluxRegFineAdd() 10 1.979e-06 2.537e-06 2.998e-06 0.00% Amr::init() 1 1.587e-06 2.058e-06 2.657e-06 0.00% DistributionMapping::Distribute() 1 8.07e-07 1.17e-06 2.098e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.521 3.522 3.522 100.00% Amr::coarseTimeStep() 10 3.322 3.322 3.322 94.30% Amr::timeStep() 10 3.309 3.31 3.31 93.98% Castro::advance() 10 3.293 3.293 3.294 93.53% Castro::subcycle_advance_ctu() 10 3.204 3.212 3.219 91.40% Castro::do_advance_ctu() 10 3.204 3.212 3.219 91.40% Castro::construct_ctu_hydro_source() 10 2.308 2.35 2.375 67.44% Gravity::make_radial_gravity() 21 0.33 0.3414 0.3497 9.93% Gravity::get_new_grav_vector() 11 0.2226 0.2246 0.2258 6.41% Castro::construct_old_gravity() 10 0.1935 0.2024 0.2096 5.95% Gravity::get_old_grav_vector() 10 0.1924 0.2016 0.209 5.93% Castro::construct_new_gravity() 10 0.196 0.1975 0.1985 5.64% FillPatchIterator::Initialize 41 0.1599 0.175 0.1865 5.30% Amr::init() 1 0.1826 0.183 0.1831 5.20% Castro::initialize_do_advance() 10 0.1545 0.167 0.1778 5.05% Amr::initialInit() 1 0.1656 0.166 0.1663 4.72% FillPatchSingleLevel 41 0.1186 0.1311 0.1438 4.08% Amr::InitializeInit() 1 0.06053 0.101 0.1354 3.85% Amr::defBaseLevel() 1 0.06052 0.101 0.1354 3.85% Castro::expand_state() 10 0.1064 0.1191 0.1308 3.71% Castro::clean_state() 62 0.1165 0.1179 0.1193 3.39% Castro::initData() 1 0.04327 0.08297 0.1181 3.35% FabArray::ParallelCopy() 41 0.07892 0.09437 0.1065 3.02% Amr::FinalizeInit() 1 0.03084 0.06496 0.1054 2.99% Castro::estTimeStep() 21 0.02244 0.06702 0.105 2.98% FabArray::setVal() 143 0.06512 0.07384 0.08693 2.47% Castro::initialize_advance() 10 0.07031 0.07805 0.08597 2.44% Castro::do_new_sources() 10 0.06076 0.06906 0.07991 2.27% amrex::Copy() 193 0.06538 0.07216 0.0786 2.23% Castro::computeInitialDt() 2 0.002174 0.03652 0.07699 2.19% Castro::computeTemp() 63 0.06858 0.07022 0.07144 2.03% FabArray::ParallelCopy_finish() 41 0.03536 0.05259 0.06975 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04927 0.05022 0.05119 1.45% Castro::reset_internal_energy(Fab) 1008 0.04896 0.04993 0.0509 1.45% Castro::do_old_sources() 10 0.04204 0.04583 0.04702 1.33% FabArray::ParallelCopy_nowait() 41 0.03666 0.0417 0.04401 1.25% Castro::normalize_species() 62 0.04137 0.04243 0.04323 1.23% StateDataPhysBCFunct::() 41 0.03337 0.03665 0.0396 1.12% StateData::FillBoundary(geom) 41 0.03328 0.03656 0.03951 1.12% Castro::construct_new_source() 50 0.02971 0.03368 0.03882 1.10% Castro::construct_new_gravity_source() 10 0.02342 0.02743 0.03244 0.92% Gravity::interpolate_monopole_grav() 21 0.02795 0.02856 0.03034 0.86% Castro::post_init() 1 0.0277 0.02801 0.02832 0.80% Amr::writePlotFile() 2 0.02753 0.02778 0.02818 0.80% VisMF::Write(FabArray) 2 0.01359 0.01425 0.01732 0.49% Castro::post_timestep() 10 0.01562 0.01597 0.01635 0.46% Castro::apply_source_to_state() 20 0.01401 0.01479 0.01579 0.45% FabArray::Saxpy() 20 0.01397 0.01474 0.01574 0.45% Castro::Castro() 1 0.01102 0.01147 0.01236 0.35% Castro::check_for_nan() 20 0.0108 0.01151 0.01219 0.35% MultiFab::contains_nan() 20 0.01078 0.01149 0.01217 0.35% FabArray::setDomainBndry() 41 0.007778 0.01032 0.01173 0.33% Castro::construct_old_source() 50 0.00743 0.01038 0.01103 0.31% Castro::construct_old_gravity_source() 10 0.00737 0.01031 0.01095 0.31% Castro::computeNewDt() 9 0.008413 0.008422 0.008432 0.24% Castro::initMFs() 1 0.006992 0.00745 0.008421 0.24% AmrLevel::AmrLevel(dm) 1 0.005752 0.006083 0.006806 0.19% StateData::define() 4 0.005726 0.00606 0.006781 0.19% Castro::enforce_min_density() 62 0.005662 0.00598 0.006318 0.18% Castro::swap_state_time_levels() 10 0.003839 0.004719 0.004926 0.14% Castro::finalize_advance() 10 0.00294 0.00372 0.004379 0.12% Castro::buildMetrics() 1 0.001773 0.001878 0.002073 0.06% Castro::finalize_do_advance() 10 0.0006488 0.001523 0.001883 0.05% Castro::post_regrid() 1 0.001541 0.001635 0.001874 0.05% Amr::InitAmr() 1 0.0002771 0.0003815 0.0007596 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.937e-05 0.0004195 0.000523 0.01% DistributionMapping::LeastUsedCPUs() 1 1.036e-05 0.000413 0.0005152 0.01% Castro::enforce_consistent_e() 1 8.052e-05 8.68e-05 9.719e-05 0.00% FabArrayBase::getCPC() 41 6.411e-05 7.688e-05 8.6e-05 0.00% Amr::writeSmallPlotFile() 1 2.557e-05 6.784e-05 7.849e-05 0.00% Amr::initSubcycle() 1 8.98e-06 1.439e-05 4.712e-05 0.00% Castro::enforce_speed_limit() 62 2.543e-05 2.976e-05 3.216e-05 0.00% FabArrayBase::CPC::define() 2 2.112e-05 2.445e-05 2.982e-05 0.00% Gravity::swapTimeLevels() 10 7.434e-06 1.121e-05 1.319e-05 0.00% Gravity::set_mass_offset() 10 8.655e-06 1.028e-05 1.285e-05 0.00% Castro::create_source_corrector() 10 7.241e-06 9.549e-06 1.24e-05 0.00% Castro::FluxRegCrseInit 10 7.076e-06 8.451e-06 9.579e-06 0.00% Castro::retry_advance_ctu() 10 4.372e-06 5.205e-06 6.021e-06 0.00% Castro::FluxRegFineAdd() 10 1.979e-06 2.537e-06 2.998e-06 0.00% DistributionMapping::Distribute() 1 8.07e-07 1.17e-06 2.098e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 47 B 139 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 15 KiB 17 KiB 20 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-37-gcbe2b291d3ed) finalized