MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-37-gcbe2b291d3ed) initialized Starting run at 06:41:27 UTC on 2023-02-15. Successfully read inputs file ... Castro git describe: 23.01-36-gfc251492d AMReX git describe: 23.02-37-gcbe2b291d Microphysics git describe: 23.02-12-g44953037 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015562624 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363307911 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361006999 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33247229 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332200592 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362612959 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328970799 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312008835 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311428956 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314947822 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315646957 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010272391 seconds Ending run at 06:41:31 UTC on 2023-02-15. Run time = 3.583352722 Run time without initialization = 3.351806883 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.582 ... 3.583 ... 3.583 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3025 2.3613 2.4301 67.82% Gravity::make_radial_gravity() 21 0.3127 0.3219 0.337 9.40% Castro::estTimeStep() 21 0.03506 0.09614 0.1629 4.55% Castro::initData() 1 0.03819 0.09676 0.1595 4.45% Castro::do_advance_ctu() 10 0.02464 0.0975 0.1585 4.42% FabArray::ParallelCopy_finish() 41 0.03351 0.04601 0.07949 2.22% amrex::Copy() 193 0.05896 0.07029 0.07906 2.21% FabArray::setVal() 143 0.05721 0.06643 0.07597 2.12% Castro::reset_internal_energy(Fab) 1008 0.04889 0.05061 0.05153 1.44% Castro::normalize_species() 62 0.04151 0.0423 0.04323 1.21% FabArray::ParallelCopy_nowait() 41 0.03645 0.04135 0.04281 1.19% StateData::FillBoundary(geom) 41 0.03415 0.03679 0.03947 1.10% FillPatchIterator::Initialize 41 0.02853 0.03303 0.0354 0.99% Castro::construct_new_gravity_source() 10 0.02357 0.02612 0.02985 0.83% Gravity::interpolate_monopole_grav() 21 0.02784 0.02808 0.02842 0.79% Castro::computeTemp() 63 0.01963 0.02024 0.02076 0.58% Castro::initialize_do_advance() 10 0.01185 0.01653 0.01776 0.50% VisMF::Write(FabArray) 2 0.01386 0.01435 0.01678 0.47% FabArray::Saxpy() 20 0.01226 0.01372 0.01465 0.41% Castro::initialize_advance() 10 0.004108 0.01001 0.01342 0.37% MultiFab::contains_nan() 20 0.01004 0.01111 0.01241 0.35% FabArray::setDomainBndry() 41 0.007753 0.0102 0.01171 0.33% Castro::construct_old_gravity_source() 10 0.007536 0.0102 0.01076 0.30% Amr::writePlotFile() 2 0.006531 0.009151 0.0101 0.28% Castro::initMFs() 1 0.006758 0.008397 0.01002 0.28% StateData::define() 4 0.005802 0.007121 0.008348 0.23% Castro::construct_new_source() 50 0.005859 0.006338 0.006686 0.19% Castro::enforce_min_density() 62 0.005622 0.006001 0.006291 0.18% main() 1 0.004994 0.005855 0.006237 0.17% Castro::swap_state_time_levels() 10 0.003376 0.004409 0.004751 0.13% Gravity::get_new_grav_vector() 11 0.002979 0.00369 0.004082 0.11% Gravity::get_old_grav_vector() 10 0.001809 0.002399 0.002959 0.08% Amr::coarseTimeStep() 10 0.001522 0.001938 0.002434 0.07% Castro::buildMetrics() 1 0.001662 0.002006 0.002342 0.07% Castro::finalize_do_advance() 10 0.0006524 0.001429 0.001764 0.05% Castro::expand_state() 10 0.0005883 0.0007802 0.000893 0.02% Amr::InitAmr() 1 0.0002969 0.0004293 0.0005511 0.02% Amr::timeStep() 10 0.0001668 0.0002507 0.0004983 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002688 0.0002858 0.0003128 0.01% DistributionMapping::LeastUsedCPUs() 1 7.581e-06 0.0001403 0.0002842 0.01% Castro::enforce_consistent_e() 1 7.877e-05 0.000112 0.0001701 0.00% Castro::clean_state() 62 0.000133 0.0001484 0.0001685 0.00% Castro::finalize_advance() 10 7.631e-05 9.304e-05 0.0001108 0.00% Amr::writeSmallPlotFile() 1 3.237e-05 6.442e-05 9.919e-05 0.00% StateDataPhysBCFunct::() 41 7.754e-05 8.629e-05 9.741e-05 0.00% Castro::Castro() 1 5.541e-05 7.237e-05 8.475e-05 0.00% Castro::construct_old_source() 50 4.218e-05 7.023e-05 8.333e-05 0.00% FabArray::ParallelCopy() 41 6.922e-05 7.173e-05 7.874e-05 0.00% Amr::FinalizeInit() 1 4.023e-06 1.397e-05 7.705e-05 0.00% FillPatchSingleLevel 41 6.55e-05 7.078e-05 7.408e-05 0.00% Castro::do_new_sources() 10 4.793e-05 5.806e-05 6.973e-05 0.00% Amr::defBaseLevel() 1 2.786e-05 4.065e-05 6.831e-05 0.00% FabArrayBase::getCPC() 41 3.836e-05 4.909e-05 6.35e-05 0.00% Castro::do_old_sources() 10 4.02e-05 5.496e-05 6.034e-05 0.00% Castro::subcycle_advance_ctu() 10 3.671e-05 4.584e-05 5.386e-05 0.00% Castro::apply_source_to_state() 20 3.192e-05 4.243e-05 4.949e-05 0.00% Castro::construct_old_gravity() 10 2.952e-05 3.881e-05 4.781e-05 0.00% Castro::advance() 10 3.649e-05 4.105e-05 4.556e-05 0.00% Castro::construct_new_gravity() 10 3.278e-05 3.723e-05 4.425e-05 0.00% Castro::post_timestep() 10 1.666e-05 2.16e-05 3.774e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.876e-05 2.664e-05 3.574e-05 0.00% Castro::enforce_speed_limit() 62 2.385e-05 2.681e-05 2.85e-05 0.00% Castro::check_for_nan() 20 1.967e-05 2.186e-05 2.624e-05 0.00% Castro::computeNewDt() 9 7.849e-06 1.115e-05 2.578e-05 0.00% FabArrayBase::CPC::define() 2 2.083e-05 2.278e-05 2.496e-05 0.00% Amr::initSubcycle() 1 9.125e-06 1.303e-05 1.637e-05 0.00% Gravity::swapTimeLevels() 10 6.091e-06 1.11e-05 1.279e-05 0.00% Gravity::set_mass_offset() 10 8.004e-06 1.065e-05 1.196e-05 0.00% Castro::create_source_corrector() 10 7.699e-06 9.43e-06 1.105e-05 0.00% Castro::FluxRegCrseInit 10 7.032e-06 7.981e-06 8.739e-06 0.00% Castro::post_regrid() 1 1.775e-06 3.599e-06 6.555e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.723e-06 4.926e-06 6.486e-06 0.00% Castro::retry_advance_ctu() 10 4.457e-06 5.25e-06 6.22e-06 0.00% Castro::computeInitialDt() 2 3.54e-06 4.395e-06 5.566e-06 0.00% Castro::post_init() 1 3.454e-06 4.171e-06 5.147e-06 0.00% Amr::InitializeInit() 1 2.33e-06 2.941e-06 5.133e-06 0.00% Castro::FluxRegFineAdd() 10 1.937e-06 2.485e-06 2.769e-06 0.00% Amr::init() 1 1.792e-06 2.116e-06 2.371e-06 0.00% Amr::initialInit() 1 1.314e-06 1.649e-06 2.273e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 1.26e-06 1.78e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.582 3.583 3.583 100.00% Amr::coarseTimeStep() 10 3.335 3.335 3.335 93.08% Amr::timeStep() 10 3.323 3.324 3.324 92.77% Castro::advance() 10 3.307 3.307 3.308 92.32% Castro::subcycle_advance_ctu() 10 3.228 3.234 3.247 90.61% Castro::do_advance_ctu() 10 3.228 3.234 3.247 90.61% Castro::construct_ctu_hydro_source() 10 2.303 2.361 2.43 67.82% Gravity::make_radial_gravity() 21 0.3286 0.338 0.3501 9.77% Amr::init() 1 0.2308 0.231 0.2311 6.45% Gravity::get_new_grav_vector() 11 0.2167 0.2194 0.2209 6.16% Amr::initialInit() 1 0.2149 0.2152 0.2154 6.01% Castro::construct_old_gravity() 10 0.1932 0.2002 0.21 5.86% Gravity::get_old_grav_vector() 10 0.1924 0.1995 0.2093 5.84% Castro::construct_new_gravity() 10 0.1931 0.1949 0.1957 5.46% FillPatchIterator::Initialize 41 0.1507 0.1677 0.1875 5.23% Amr::InitializeInit() 1 0.05896 0.1211 0.1868 5.21% Amr::defBaseLevel() 1 0.05896 0.1211 0.1868 5.21% Castro::initialize_do_advance() 10 0.1508 0.1617 0.1692 4.72% Castro::initData() 1 0.04163 0.1012 0.1637 4.57% Castro::estTimeStep() 21 0.03506 0.09614 0.1629 4.55% Amr::FinalizeInit() 1 0.02834 0.0941 0.1565 4.37% FillPatchSingleLevel 41 0.112 0.1245 0.1512 4.22% Castro::computeInitialDt() 2 0.002207 0.06804 0.1303 3.64% Castro::expand_state() 10 0.1022 0.1151 0.125 3.49% Castro::clean_state() 62 0.1164 0.1184 0.1201 3.35% FabArray::ParallelCopy() 41 0.07635 0.08751 0.1161 3.24% FabArray::ParallelCopy_finish() 41 0.03351 0.04601 0.07949 2.22% amrex::Copy() 193 0.05896 0.07029 0.07906 2.21% Castro::initialize_advance() 10 0.05628 0.06985 0.07651 2.14% FabArray::setVal() 143 0.05721 0.06643 0.07597 2.12% Castro::do_new_sources() 10 0.06085 0.06595 0.0737 2.06% Castro::computeTemp() 63 0.06912 0.07114 0.07255 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04917 0.0509 0.05179 1.45% Castro::reset_internal_energy(Fab) 1008 0.04889 0.05061 0.05153 1.44% Castro::do_old_sources() 10 0.04031 0.04514 0.0464 1.29% Castro::normalize_species() 62 0.04151 0.0423 0.04323 1.21% FabArray::ParallelCopy_nowait() 41 0.03651 0.04142 0.04288 1.20% StateDataPhysBCFunct::() 41 0.03424 0.03688 0.03956 1.10% StateData::FillBoundary(geom) 41 0.03415 0.03679 0.03947 1.10% Castro::construct_new_source() 50 0.0299 0.03246 0.0365 1.02% Castro::construct_new_gravity_source() 10 0.02357 0.02612 0.02985 0.83% Gravity::interpolate_monopole_grav() 21 0.02784 0.02808 0.02842 0.79% Amr::writePlotFile() 2 0.02595 0.02613 0.02636 0.74% Castro::post_init() 1 0.02509 0.02545 0.02572 0.72% VisMF::Write(FabArray) 2 0.01386 0.01435 0.01678 0.47% Castro::post_timestep() 10 0.01555 0.01614 0.01669 0.47% Castro::apply_source_to_state() 20 0.01229 0.01376 0.01469 0.41% Castro::Castro() 1 0.01031 0.01252 0.01468 0.41% FabArray::Saxpy() 20 0.01226 0.01372 0.01465 0.41% Castro::check_for_nan() 20 0.01006 0.01113 0.01243 0.35% MultiFab::contains_nan() 20 0.01004 0.01111 0.01241 0.35% FabArray::setDomainBndry() 41 0.007753 0.0102 0.01171 0.33% Castro::construct_old_source() 50 0.007578 0.01027 0.01083 0.30% Castro::construct_old_gravity_source() 10 0.007536 0.0102 0.01076 0.30% Castro::initMFs() 1 0.006758 0.008397 0.01002 0.28% Castro::computeNewDt() 9 0.00848 0.008509 0.008528 0.24% AmrLevel::AmrLevel(dm) 1 0.005827 0.007147 0.008384 0.23% StateData::define() 4 0.005802 0.007121 0.008348 0.23% Castro::enforce_min_density() 62 0.005622 0.006001 0.006291 0.18% Castro::swap_state_time_levels() 10 0.003376 0.004409 0.004751 0.13% Castro::finalize_advance() 10 0.002953 0.003428 0.004083 0.11% Castro::buildMetrics() 1 0.001793 0.002186 0.002574 0.07% Castro::post_regrid() 1 0.001565 0.001665 0.00188 0.05% Castro::finalize_do_advance() 10 0.0006524 0.001429 0.001764 0.05% Amr::InitAmr() 1 0.0003071 0.0004424 0.0005674 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.287e-05 0.0001465 0.0002915 0.01% DistributionMapping::LeastUsedCPUs() 1 7.581e-06 0.0001403 0.0002842 0.01% Castro::enforce_consistent_e() 1 7.877e-05 0.000112 0.0001701 0.00% Amr::writeSmallPlotFile() 1 3.237e-05 6.442e-05 9.919e-05 0.00% FabArrayBase::getCPC() 41 6.332e-05 7.187e-05 8.716e-05 0.00% Castro::enforce_speed_limit() 62 2.385e-05 2.681e-05 2.85e-05 0.00% FabArrayBase::CPC::define() 2 2.083e-05 2.278e-05 2.496e-05 0.00% Amr::initSubcycle() 1 9.125e-06 1.303e-05 1.637e-05 0.00% Gravity::swapTimeLevels() 10 6.091e-06 1.11e-05 1.279e-05 0.00% Gravity::set_mass_offset() 10 8.004e-06 1.065e-05 1.196e-05 0.00% Castro::create_source_corrector() 10 7.699e-06 9.43e-06 1.105e-05 0.00% Castro::FluxRegCrseInit 10 7.032e-06 7.981e-06 8.739e-06 0.00% Castro::retry_advance_ctu() 10 4.457e-06 5.25e-06 6.22e-06 0.00% Castro::FluxRegFineAdd() 10 1.937e-06 2.485e-06 2.769e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 1.26e-06 1.78e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 38 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 15 KiB 18 KiB 21 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-37-gcbe2b291d3ed) finalized