MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-37-gcbe2b291d3ed) initialized Starting run at 06:41:13 UTC on 2023-02-16. Successfully read inputs file ... Castro git describe: 23.01-36-gfc251492d AMReX git describe: 23.02-37-gcbe2b291d Microphysics git describe: 23.02-13-g3d421448 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0169683 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.391660077 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.394588019 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333648418 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332437836 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363883596 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330319305 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311316872 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312739244 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313567274 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313599714 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010677034 seconds Ending run at 06:41:17 UTC on 2023-02-16. Run time = 3.599610313 Run time without initialization = 3.416045606 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.598 ... 3.599 ... 3.6 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3202 2.3714 2.4294 67.49% Gravity::make_radial_gravity() 21 0.3309 0.342 0.3531 9.81% Castro::do_advance_ctu() 10 0.04476 0.1078 0.1621 4.50% Castro::estTimeStep() 21 0.02483 0.07234 0.1219 3.39% Castro::initData() 1 0.03821 0.07823 0.1126 3.13% FabArray::setVal() 143 0.06388 0.0715 0.08264 2.30% amrex::Copy() 193 0.06448 0.07182 0.08064 2.24% FabArray::ParallelCopy_finish() 41 0.03638 0.04693 0.06298 1.75% Castro::reset_internal_energy(Fab) 1008 0.0485 0.05079 0.05309 1.47% FabArray::ParallelCopy_nowait() 41 0.03683 0.04249 0.04458 1.24% Castro::normalize_species() 62 0.04163 0.04248 0.04413 1.23% StateData::FillBoundary(geom) 41 0.03337 0.03765 0.04345 1.21% FillPatchIterator::Initialize 41 0.02905 0.03494 0.03774 1.05% Castro::construct_new_gravity_source() 10 0.02337 0.02723 0.0342 0.95% Gravity::interpolate_monopole_grav() 21 0.02785 0.02824 0.02883 0.80% Castro::computeTemp() 63 0.01976 0.02039 0.0213 0.59% Castro::initialize_do_advance() 10 0.01206 0.01771 0.01941 0.54% VisMF::Write(FabArray) 2 0.01373 0.01452 0.01775 0.49% FabArray::Saxpy() 20 0.0134 0.014 0.01465 0.41% Castro::initialize_advance() 10 0.009645 0.01201 0.01458 0.41% MultiFab::contains_nan() 20 0.0106 0.01145 0.01271 0.35% FabArray::setDomainBndry() 41 0.007865 0.01096 0.01225 0.34% Castro::construct_old_gravity_source() 10 0.007636 0.01045 0.01133 0.31% Amr::writePlotFile() 2 0.007165 0.01022 0.01104 0.31% Castro::initMFs() 1 0.006869 0.007159 0.009079 0.25% main() 1 0.005484 0.005983 0.006727 0.19% StateData::define() 4 0.005642 0.005791 0.006538 0.18% Castro::construct_new_source() 50 0.006019 0.006169 0.006501 0.18% Castro::enforce_min_density() 62 0.005844 0.006097 0.006297 0.17% Castro::swap_state_time_levels() 10 0.003538 0.004906 0.005559 0.15% Gravity::get_new_grav_vector() 11 0.002904 0.003643 0.004244 0.12% Amr::coarseTimeStep() 10 0.001432 0.002638 0.003652 0.10% Gravity::get_old_grav_vector() 10 0.001737 0.002369 0.002817 0.08% Castro::finalize_do_advance() 10 0.0006158 0.001699 0.002124 0.06% Castro::buildMetrics() 1 0.001603 0.00165 0.001887 0.05% Castro::expand_state() 10 0.000661 0.0008107 0.0009012 0.03% Amr::timeStep() 10 0.0002092 0.0002652 0.0004411 0.01% Amr::InitAmr() 1 0.0002743 0.0003024 0.0004124 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002745 0.0002975 0.0003332 0.01% Castro::clean_state() 62 0.0001449 0.0001551 0.0001654 0.00% DistributionMapping::LeastUsedCPUs() 1 6.882e-06 0.0001128 0.0001331 0.00% Castro::enforce_consistent_e() 1 7.551e-05 9.077e-05 0.0001178 0.00% Castro::finalize_advance() 10 8.149e-05 9.421e-05 0.0001095 0.00% StateDataPhysBCFunct::() 41 7.951e-05 9.189e-05 0.0001036 0.00% FabArray::ParallelCopy() 41 6.742e-05 7.905e-05 9.731e-05 0.00% Amr::FinalizeInit() 1 3.886e-06 1.58e-05 9.23e-05 0.00% Castro::Castro() 1 5.503e-05 7.517e-05 9.205e-05 0.00% FillPatchSingleLevel 41 6.323e-05 7.483e-05 9.104e-05 0.00% Castro::construct_old_source() 50 5.222e-05 6.773e-05 8.339e-05 0.00% Amr::writeSmallPlotFile() 1 4.033e-05 6.873e-05 8.024e-05 0.00% Castro::do_old_sources() 10 5.294e-05 5.902e-05 7.046e-05 0.00% Castro::do_new_sources() 10 5.323e-05 6.29e-05 6.937e-05 0.00% FabArrayBase::getCPC() 41 4.176e-05 5.099e-05 6.025e-05 0.00% Castro::subcycle_advance_ctu() 10 4.377e-05 4.875e-05 5.82e-05 0.00% Castro::construct_old_gravity() 10 3.446e-05 4.494e-05 5.668e-05 0.00% Castro::construct_new_gravity() 10 3.464e-05 4.265e-05 5.391e-05 0.00% Castro::apply_source_to_state() 20 3.591e-05 4.477e-05 5.365e-05 0.00% Amr::defBaseLevel() 1 2.744e-05 4.258e-05 5.154e-05 0.00% Castro::advance() 10 3.865e-05 4.214e-05 4.74e-05 0.00% Castro::post_timestep() 10 1.661e-05 2.366e-05 3.443e-05 0.00% Castro::check_for_nan() 20 1.9e-05 2.391e-05 3.175e-05 0.00% Castro::enforce_speed_limit() 62 2.526e-05 2.832e-05 3.118e-05 0.00% FabArrayBase::CPC::define() 2 2.045e-05 2.425e-05 2.776e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.782e-05 2.1e-05 2.405e-05 0.00% Castro::computeNewDt() 9 8.235e-06 1.02e-05 1.516e-05 0.00% Gravity::swapTimeLevels() 10 9.885e-06 1.218e-05 1.496e-05 0.00% Castro::create_source_corrector() 10 7.702e-06 9.699e-06 1.189e-05 0.00% Castro::FluxRegCrseInit 10 6.599e-06 8.431e-06 1.131e-05 0.00% Gravity::set_mass_offset() 10 8.909e-06 1.032e-05 1.108e-05 0.00% Amr::initSubcycle() 1 8.933e-06 9.558e-06 1.083e-05 0.00% Castro::post_init() 1 3.583e-06 5.452e-06 1.026e-05 0.00% Amr::initialInit() 1 1.155e-06 2.308e-06 8.134e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.419e-06 4.433e-06 6.439e-06 0.00% Castro::retry_advance_ctu() 10 4.744e-06 5.304e-06 5.959e-06 0.00% Castro::computeInitialDt() 2 4.052e-06 4.644e-06 5.264e-06 0.00% Castro::post_regrid() 1 1.833e-06 3.131e-06 4.976e-06 0.00% Amr::InitializeInit() 1 1.938e-06 2.542e-06 4.814e-06 0.00% Castro::FluxRegFineAdd() 10 1.839e-06 2.323e-06 2.859e-06 0.00% Amr::init() 1 1.887e-06 2.292e-06 2.576e-06 0.00% DistributionMapping::Distribute() 1 8.98e-07 1.081e-06 1.239e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.598 3.599 3.6 100.00% Amr::coarseTimeStep() 10 3.399 3.399 3.399 94.42% Amr::timeStep() 10 3.384 3.385 3.387 94.08% Castro::advance() 10 3.368 3.369 3.37 93.61% Castro::subcycle_advance_ctu() 10 3.284 3.29 3.295 91.54% Castro::do_advance_ctu() 10 3.284 3.29 3.295 91.54% Castro::construct_ctu_hydro_source() 10 2.32 2.371 2.429 67.49% Gravity::make_radial_gravity() 21 0.3472 0.3585 0.3689 10.25% Gravity::get_new_grav_vector() 11 0.2332 0.2354 0.2374 6.59% Castro::construct_old_gravity() 10 0.1976 0.207 0.2173 6.04% Gravity::get_old_grav_vector() 10 0.1969 0.2063 0.2166 6.02% Castro::construct_new_gravity() 10 0.2055 0.207 0.2084 5.79% FillPatchIterator::Initialize 41 0.1602 0.1733 0.1855 5.15% Amr::init() 1 0.183 0.1831 0.1831 5.09% Castro::initialize_do_advance() 10 0.1494 0.1653 0.1775 4.93% Amr::initialInit() 1 0.1658 0.1662 0.1666 4.63% FillPatchSingleLevel 41 0.1162 0.1274 0.1357 3.77% Amr::InitializeInit() 1 0.05939 0.0998 0.1341 3.73% Amr::defBaseLevel() 1 0.05939 0.09979 0.1341 3.73% Castro::expand_state() 10 0.1044 0.117 0.1277 3.55% Castro::clean_state() 62 0.116 0.1193 0.1243 3.45% Castro::estTimeStep() 21 0.02483 0.07234 0.1219 3.39% Castro::initData() 1 0.04214 0.08227 0.1168 3.24% Amr::FinalizeInit() 1 0.03209 0.06639 0.107 2.97% FabArray::ParallelCopy() 41 0.08047 0.08957 0.09999 2.78% FabArray::setVal() 143 0.06388 0.0715 0.08264 2.30% Castro::initialize_advance() 10 0.07075 0.07576 0.0818 2.27% Castro::do_new_sources() 10 0.05982 0.0675 0.08142 2.26% amrex::Copy() 193 0.06448 0.07182 0.08064 2.24% Castro::computeInitialDt() 2 0.002517 0.03682 0.07724 2.15% Castro::computeTemp() 63 0.06854 0.07148 0.07469 2.07% FabArray::ParallelCopy_finish() 41 0.03638 0.04693 0.06298 1.75% Castro::reset_internal_energy(MultiFab) 63 0.04878 0.05109 0.05339 1.48% Castro::reset_internal_energy(Fab) 1008 0.0485 0.05079 0.05309 1.47% Castro::do_old_sources() 10 0.04246 0.0461 0.04714 1.31% FabArray::ParallelCopy_nowait() 41 0.03692 0.04256 0.04465 1.24% Castro::normalize_species() 62 0.04163 0.04248 0.04413 1.23% StateDataPhysBCFunct::() 41 0.03345 0.03774 0.04355 1.21% StateData::FillBoundary(geom) 41 0.03337 0.03765 0.04345 1.21% Castro::construct_new_source() 50 0.02945 0.0334 0.0407 1.13% Castro::construct_new_gravity_source() 10 0.02337 0.02723 0.0342 0.95% Castro::post_init() 1 0.02923 0.02948 0.02981 0.83% Gravity::interpolate_monopole_grav() 21 0.02785 0.02824 0.02883 0.80% Amr::writePlotFile() 2 0.02727 0.02766 0.02798 0.78% VisMF::Write(FabArray) 2 0.01373 0.01452 0.01775 0.49% Castro::post_timestep() 10 0.01569 0.0161 0.01669 0.46% Castro::apply_source_to_state() 20 0.01345 0.01404 0.01469 0.41% FabArray::Saxpy() 20 0.0134 0.014 0.01465 0.41% Castro::check_for_nan() 20 0.01063 0.01147 0.01274 0.35% MultiFab::contains_nan() 20 0.0106 0.01145 0.01271 0.35% Castro::Castro() 1 0.01137 0.01155 0.01244 0.35% FabArray::setDomainBndry() 41 0.007865 0.01096 0.01225 0.34% Castro::construct_old_source() 50 0.007689 0.01051 0.0114 0.32% Castro::construct_old_gravity_source() 10 0.007636 0.01045 0.01133 0.31% Castro::computeNewDt() 9 0.009166 0.009207 0.009225 0.26% Castro::initMFs() 1 0.006869 0.007159 0.009079 0.25% AmrLevel::AmrLevel(dm) 1 0.005663 0.005812 0.00656 0.18% StateData::define() 4 0.005642 0.005791 0.006538 0.18% Castro::enforce_min_density() 62 0.005844 0.006097 0.006297 0.17% Castro::swap_state_time_levels() 10 0.003538 0.004906 0.005559 0.15% Castro::finalize_advance() 10 0.002899 0.003395 0.003963 0.11% Castro::finalize_do_advance() 10 0.0006158 0.001699 0.002124 0.06% Castro::post_regrid() 1 0.001505 0.001625 0.00206 0.06% Castro::buildMetrics() 1 0.001741 0.001789 0.002055 0.06% Amr::InitAmr() 1 0.0002844 0.000312 0.0004215 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.142e-05 0.0001183 0.0001404 0.00% DistributionMapping::LeastUsedCPUs() 1 6.882e-06 0.0001128 0.0001331 0.00% Castro::enforce_consistent_e() 1 7.551e-05 9.077e-05 0.0001178 0.00% FabArrayBase::getCPC() 41 6.823e-05 7.524e-05 8.38e-05 0.00% Amr::writeSmallPlotFile() 1 4.033e-05 6.873e-05 8.024e-05 0.00% Castro::enforce_speed_limit() 62 2.526e-05 2.832e-05 3.118e-05 0.00% FabArrayBase::CPC::define() 2 2.045e-05 2.425e-05 2.776e-05 0.00% Gravity::swapTimeLevels() 10 9.885e-06 1.218e-05 1.496e-05 0.00% Castro::create_source_corrector() 10 7.702e-06 9.699e-06 1.189e-05 0.00% Castro::FluxRegCrseInit 10 6.599e-06 8.431e-06 1.131e-05 0.00% Gravity::set_mass_offset() 10 8.909e-06 1.032e-05 1.108e-05 0.00% Amr::initSubcycle() 1 8.933e-06 9.558e-06 1.083e-05 0.00% Castro::retry_advance_ctu() 10 4.744e-06 5.304e-06 5.959e-06 0.00% Castro::FluxRegFineAdd() 10 1.839e-06 2.323e-06 2.859e-06 0.00% DistributionMapping::Distribute() 1 8.98e-07 1.081e-06 1.239e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 15 KiB 17 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-37-gcbe2b291d3ed) finalized