MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-38-g5729dd1c7eb2) initialized Starting run at 15:43:06 UTC on 2023-02-17. Successfully read inputs file ... Castro git describe: 23.01-44-g5ea312bd6 AMReX git describe: 23.02-38-g5729dd1c7 Microphysics git describe: 23.02-14-gdf3f5770 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019792691 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.383377599 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.323635263 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.320805207 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.321663942 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.339974385 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337198159 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313557411 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313373929 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312856366 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.3129525 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010356933 seconds Ending run at 15:43:09 UTC on 2023-02-17. Run time = 3.516643983 Run time without initialization = 3.296695493 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.516 ... 3.516 ... 3.517 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2812 2.3329 2.3652 67.26% Gravity::make_radial_gravity() 21 0.3313 0.3417 0.3561 10.13% Castro::estTimeStep() 21 0.04807 0.08638 0.1447 4.11% Castro::initData() 1 0.03798 0.08847 0.1364 3.88% Castro::do_advance_ctu() 10 0.02909 0.06493 0.1188 3.38% FabArray::ParallelCopy_finish() 41 0.0384 0.05714 0.1013 2.88% FabArray::setVal() 143 0.03499 0.06132 0.07782 2.21% amrex::Copy() 193 0.0499 0.06472 0.07484 2.13% Castro::reset_internal_energy(Fab) 1008 0.04678 0.0496 0.05149 1.46% Castro::normalize_species() 62 0.04096 0.04277 0.04398 1.25% FabArray::ParallelCopy_nowait() 41 0.03296 0.03882 0.04101 1.17% StateData::FillBoundary(geom) 41 0.03431 0.03684 0.04085 1.16% FillPatchIterator::Initialize 41 0.02961 0.0322 0.03553 1.01% Castro::construct_new_gravity_source() 10 0.01939 0.02507 0.03256 0.93% Gravity::interpolate_monopole_grav() 21 0.02847 0.02902 0.03006 0.85% Castro::computeTemp() 63 0.01803 0.0197 0.02078 0.59% VisMF::Write(FabArray) 2 0.01373 0.01504 0.01933 0.55% Castro::initialize_do_advance() 10 0.01226 0.0162 0.0182 0.52% Amr::writePlotFile() 2 0.009051 0.01216 0.01409 0.40% FabArray::Saxpy() 20 0.008316 0.01237 0.01337 0.38% Castro::initialize_advance() 10 0.004167 0.009191 0.01295 0.37% MultiFab::contains_nan() 20 0.009391 0.0105 0.01181 0.34% FabArray::setDomainBndry() 41 0.00789 0.009358 0.01044 0.30% Castro::initMFs() 1 0.006815 0.007773 0.01014 0.29% Castro::construct_old_gravity_source() 10 0.005833 0.008985 0.009837 0.28% StateData::define() 4 0.005628 0.006351 0.008084 0.23% Castro::construct_new_source() 50 0.005034 0.005885 0.006349 0.18% Castro::swap_state_time_levels() 10 0.002928 0.004748 0.006323 0.18% main() 1 0.005358 0.005801 0.006224 0.18% Castro::enforce_min_density() 62 0.005489 0.005828 0.006083 0.17% Gravity::get_new_grav_vector() 11 0.002879 0.003458 0.004118 0.12% Amr::coarseTimeStep() 10 0.001005 0.00254 0.003484 0.10% Gravity::get_old_grav_vector() 10 0.001622 0.002133 0.002553 0.07% Castro::buildMetrics() 1 0.001605 0.001825 0.002351 0.07% Castro::finalize_do_advance() 10 0.0008025 0.001269 0.00158 0.04% Castro::expand_state() 10 0.0006867 0.0008143 0.001095 0.03% Amr::InitAmr() 1 0.000259 0.0003524 0.0005031 0.01% Amr::timeStep() 10 0.0001727 0.0002503 0.000402 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002792 0.0003005 0.0003255 0.01% DistributionMapping::LeastUsedCPUs() 1 6.301e-06 0.0001792 0.0002748 0.01% StateDataPhysBCFunct::() 41 7.961e-05 0.0001026 0.0001593 0.00% Castro::clean_state() 62 0.0001344 0.0001422 0.0001506 0.00% Castro::enforce_consistent_e() 1 7.582e-05 9.804e-05 0.0001454 0.00% Castro::finalize_advance() 10 8.274e-05 9.56e-05 0.0001102 0.00% Castro::Castro() 1 6.167e-05 7.527e-05 8.845e-05 0.00% Amr::FinalizeInit() 1 4.033e-06 1.491e-05 8.337e-05 0.00% Castro::do_new_sources() 10 4.583e-05 5.938e-05 8.24e-05 0.00% FabArray::ParallelCopy() 41 6.45e-05 7.3e-05 8.044e-05 0.00% FillPatchSingleLevel 41 5.945e-05 7.114e-05 7.893e-05 0.00% Castro::do_old_sources() 10 4.253e-05 5.539e-05 7.757e-05 0.00% Castro::construct_old_source() 50 4.555e-05 5.902e-05 7.141e-05 0.00% Amr::writeSmallPlotFile() 1 2.585e-05 4.98e-05 7.016e-05 0.00% FabArrayBase::getCPC() 41 4.404e-05 4.962e-05 6.811e-05 0.00% Amr::defBaseLevel() 1 2.795e-05 4.092e-05 5.665e-05 0.00% Castro::subcycle_advance_ctu() 10 3.832e-05 4.457e-05 5.391e-05 0.00% Castro::construct_old_gravity() 10 3.154e-05 4.153e-05 4.987e-05 0.00% Castro::construct_new_gravity() 10 3.459e-05 3.939e-05 4.608e-05 0.00% Castro::post_timestep() 10 1.391e-05 2.693e-05 4.22e-05 0.00% Castro::apply_source_to_state() 20 3.418e-05 3.897e-05 4.145e-05 0.00% Castro::advance() 10 3.291e-05 3.775e-05 4.065e-05 0.00% Castro::enforce_speed_limit() 62 2.508e-05 2.955e-05 3.711e-05 0.00% FabArrayBase::CPC::define() 2 2.274e-05 2.712e-05 3.295e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.516e-05 2.25e-05 2.615e-05 0.00% Castro::check_for_nan() 20 1.983e-05 2.209e-05 2.532e-05 0.00% Castro::computeNewDt() 9 6.872e-06 1.245e-05 2.497e-05 0.00% Gravity::set_mass_offset() 10 9.05e-06 1.094e-05 1.802e-05 0.00% Amr::initSubcycle() 1 9.031e-06 1.123e-05 1.579e-05 0.00% Castro::post_init() 1 2.595e-06 6.417e-06 1.397e-05 0.00% Gravity::swapTimeLevels() 10 8.366e-06 1.078e-05 1.341e-05 0.00% Castro::FluxRegCrseInit 10 7.017e-06 8.49e-06 1.036e-05 0.00% Castro::create_source_corrector() 10 8.097e-06 9.156e-06 1.024e-05 0.00% Amr::initialInit() 1 1.159e-06 2.491e-06 8.7e-06 0.00% Castro::retry_advance_ctu() 10 5.16e-06 6.354e-06 7.731e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.917e-06 4.928e-06 6.403e-06 0.00% Castro::computeInitialDt() 2 3.469e-06 4.313e-06 5.835e-06 0.00% Amr::InitializeInit() 1 1.978e-06 2.768e-06 4.771e-06 0.00% Castro::post_regrid() 1 2.166e-06 3.211e-06 4.495e-06 0.00% Castro::FluxRegFineAdd() 10 1.85e-06 2.421e-06 3.138e-06 0.00% Amr::init() 1 1.695e-06 2.29e-06 3.116e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.12e-06 1.392e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.516 3.516 3.517 100.00% Amr::coarseTimeStep() 10 3.28 3.28 3.28 93.28% Amr::timeStep() 10 3.267 3.268 3.269 92.96% Castro::advance() 10 3.25 3.251 3.253 92.49% Castro::subcycle_advance_ctu() 10 3.17 3.181 3.202 91.06% Castro::do_advance_ctu() 10 3.17 3.181 3.202 91.06% Castro::construct_ctu_hydro_source() 10 2.281 2.333 2.365 67.26% Gravity::make_radial_gravity() 21 0.3463 0.3566 0.3704 10.53% Gravity::get_new_grav_vector() 11 0.2314 0.2339 0.2358 6.70% Amr::init() 1 0.2192 0.2194 0.2195 6.24% Castro::construct_old_gravity() 10 0.1947 0.2036 0.2158 6.14% Gravity::get_old_grav_vector() 10 0.1939 0.2028 0.2153 6.12% FillPatchIterator::Initialize 41 0.1537 0.1747 0.207 5.89% Amr::initialInit() 1 0.1994 0.2005 0.201 5.72% Castro::construct_new_gravity() 10 0.1941 0.1955 0.1967 5.59% Castro::initialize_do_advance() 10 0.1541 0.1689 0.1853 5.27% FillPatchSingleLevel 41 0.1147 0.1331 0.1693 4.81% Amr::InitializeInit() 1 0.05838 0.1111 0.1579 4.49% Amr::defBaseLevel() 1 0.05838 0.1111 0.1579 4.49% Castro::estTimeStep() 21 0.04807 0.08638 0.1447 4.11% Castro::expand_state() 10 0.1071 0.1226 0.1429 4.06% Amr::FinalizeInit() 1 0.04249 0.08932 0.1425 4.05% Castro::initData() 1 0.04172 0.09292 0.1405 3.99% FabArray::ParallelCopy() 41 0.07872 0.09611 0.1344 3.82% Castro::clean_state() 62 0.1112 0.1172 0.121 3.44% Castro::computeInitialDt() 2 0.002801 0.04959 0.1024 2.91% FabArray::ParallelCopy_finish() 41 0.0384 0.05714 0.1013 2.88% Castro::do_new_sources() 10 0.04982 0.06298 0.07924 2.25% Castro::initialize_advance() 10 0.04533 0.06685 0.07846 2.23% FabArray::setVal() 143 0.03499 0.06132 0.07782 2.21% amrex::Copy() 193 0.0499 0.06472 0.07484 2.13% Castro::computeTemp() 63 0.06509 0.0696 0.07258 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04706 0.0499 0.0518 1.47% Castro::reset_internal_energy(Fab) 1008 0.04678 0.0496 0.05149 1.46% Castro::do_old_sources() 10 0.03315 0.0412 0.04409 1.25% Castro::normalize_species() 62 0.04096 0.04277 0.04398 1.25% FabArray::ParallelCopy_nowait() 41 0.03305 0.03889 0.04109 1.17% StateDataPhysBCFunct::() 41 0.0344 0.03695 0.04097 1.17% StateData::FillBoundary(geom) 41 0.03431 0.03684 0.04085 1.16% Castro::post_init() 1 0.03867 0.03938 0.04016 1.14% Castro::construct_new_source() 50 0.02442 0.03095 0.03886 1.11% Castro::construct_new_gravity_source() 10 0.01939 0.02507 0.03256 0.93% Amr::writePlotFile() 2 0.02863 0.02937 0.03041 0.86% Gravity::interpolate_monopole_grav() 21 0.02847 0.02902 0.03006 0.85% VisMF::Write(FabArray) 2 0.01373 0.01504 0.01933 0.55% Castro::post_timestep() 10 0.01515 0.01585 0.01661 0.47% Castro::Castro() 1 0.01067 0.01161 0.01428 0.41% Castro::apply_source_to_state() 20 0.008356 0.01241 0.01341 0.38% FabArray::Saxpy() 20 0.008316 0.01237 0.01337 0.38% Castro::check_for_nan() 20 0.009412 0.01052 0.01183 0.34% MultiFab::contains_nan() 20 0.009391 0.0105 0.01181 0.34% FabArray::setDomainBndry() 41 0.00789 0.009358 0.01044 0.30% Castro::initMFs() 1 0.006815 0.007773 0.01014 0.29% Castro::construct_old_source() 50 0.005879 0.009044 0.009907 0.28% Castro::construct_old_gravity_source() 10 0.005833 0.008985 0.009837 0.28% Castro::computeNewDt() 9 0.008482 0.008488 0.008499 0.24% AmrLevel::AmrLevel(dm) 1 0.005651 0.006373 0.00811 0.23% StateData::define() 4 0.005628 0.006351 0.008084 0.23% Castro::swap_state_time_levels() 10 0.002928 0.004748 0.006323 0.18% Castro::enforce_min_density() 62 0.005489 0.005828 0.006083 0.17% Castro::finalize_advance() 10 0.002044 0.00324 0.004214 0.12% Castro::post_regrid() 1 0.001571 0.001981 0.002997 0.09% Castro::buildMetrics() 1 0.001719 0.001967 0.002556 0.07% Castro::finalize_do_advance() 10 0.0008025 0.001269 0.00158 0.04% Amr::InitAmr() 1 0.0002684 0.0003636 0.0005184 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.151e-05 0.0001853 0.0002822 0.01% DistributionMapping::LeastUsedCPUs() 1 6.301e-06 0.0001792 0.0002748 0.01% Castro::enforce_consistent_e() 1 7.582e-05 9.804e-05 0.0001454 0.00% FabArrayBase::getCPC() 41 6.839e-05 7.675e-05 9.418e-05 0.00% Amr::writeSmallPlotFile() 1 2.585e-05 4.98e-05 7.016e-05 0.00% Castro::enforce_speed_limit() 62 2.508e-05 2.955e-05 3.711e-05 0.00% FabArrayBase::CPC::define() 2 2.274e-05 2.712e-05 3.295e-05 0.00% Gravity::set_mass_offset() 10 9.05e-06 1.094e-05 1.802e-05 0.00% Amr::initSubcycle() 1 9.031e-06 1.123e-05 1.579e-05 0.00% Gravity::swapTimeLevels() 10 8.366e-06 1.078e-05 1.341e-05 0.00% Castro::FluxRegCrseInit 10 7.017e-06 8.49e-06 1.036e-05 0.00% Castro::create_source_corrector() 10 8.097e-06 9.156e-06 1.024e-05 0.00% Castro::retry_advance_ctu() 10 5.16e-06 6.354e-06 7.731e-06 0.00% Castro::FluxRegFineAdd() 10 1.85e-06 2.421e-06 3.138e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.12e-06 1.392e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 15 KiB 16 KiB 21 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-38-g5729dd1c7eb2) finalized