MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-38-g5729dd1c7eb2) initialized Starting run at 06:41:49 UTC on 2023-02-17. Successfully read inputs file ... Castro git describe: 23.01-36-gfc251492d AMReX git describe: 23.02-38-g5729dd1c7 Microphysics git describe: 23.02-14-gdf3f5770 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015567432 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36500252 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.365825681 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331205724 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330398154 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357512481 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330325478 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313419701 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313467348 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31298326 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314200922 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010484009 seconds Ending run at 06:41:53 UTC on 2023-02-17. Run time = 3.585229277 Run time without initialization = 3.35181575 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.584 ... 3.585 ... 3.585 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2772 2.3522 2.4259 67.66% Gravity::make_radial_gravity() 21 0.3095 0.3212 0.3375 9.41% Castro::do_advance_ctu() 10 0.02331 0.1018 0.18 5.02% Castro::initData() 1 0.03852 0.077 0.1141 3.18% Castro::estTimeStep() 21 0.02068 0.06753 0.1114 3.11% FabArray::ParallelCopy_finish() 41 0.03505 0.04846 0.08155 2.27% FabArray::setVal() 143 0.05923 0.0688 0.07972 2.22% amrex::Copy() 193 0.05982 0.0713 0.07918 2.21% Amr::InitAmr() 1 0.0002818 0.007048 0.05435 1.52% DistributionMapping::LeastUsedCPUs() 1 8.28e-06 0.04731 0.05407 1.51% Castro::reset_internal_energy(Fab) 1008 0.04763 0.05011 0.05249 1.46% Castro::normalize_species() 62 0.0415 0.04209 0.04265 1.19% FabArray::ParallelCopy_nowait() 41 0.03706 0.04126 0.04261 1.19% StateData::FillBoundary(geom) 41 0.0333 0.03637 0.04075 1.14% FillPatchIterator::Initialize 41 0.02861 0.03296 0.03534 0.99% Castro::construct_new_gravity_source() 10 0.02376 0.02631 0.02995 0.84% Gravity::interpolate_monopole_grav() 21 0.02767 0.02808 0.02858 0.80% Castro::computeTemp() 63 0.01833 0.01987 0.02079 0.58% Castro::initialize_do_advance() 10 0.01185 0.01693 0.01929 0.54% VisMF::Write(FabArray) 2 0.01363 0.01425 0.01675 0.47% FabArray::Saxpy() 20 0.01234 0.014 0.01474 0.41% Castro::initialize_advance() 10 0.004056 0.01006 0.01346 0.38% MultiFab::contains_nan() 20 0.009993 0.01113 0.01225 0.34% FabArray::setDomainBndry() 41 0.007974 0.01012 0.01164 0.32% Castro::construct_old_gravity_source() 10 0.007635 0.01038 0.01097 0.31% Amr::writePlotFile() 2 0.006822 0.009208 0.01046 0.29% Castro::initMFs() 1 0.006794 0.006809 0.006832 0.19% Castro::construct_new_source() 50 0.005819 0.006312 0.006668 0.19% Castro::enforce_min_density() 62 0.005709 0.006029 0.006242 0.17% main() 1 0.005237 0.005777 0.006167 0.17% StateData::define() 4 0.00566 0.005691 0.005725 0.16% Castro::swap_state_time_levels() 10 0.003393 0.004438 0.004786 0.13% Gravity::get_new_grav_vector() 11 0.00283 0.003553 0.004225 0.12% Gravity::get_old_grav_vector() 10 0.0017 0.002383 0.002747 0.08% Amr::coarseTimeStep() 10 0.001472 0.001942 0.002592 0.07% Castro::finalize_do_advance() 10 0.0006637 0.001624 0.002013 0.06% Castro::buildMetrics() 1 0.001599 0.001607 0.001618 0.05% Castro::expand_state() 10 0.0006771 0.0009419 0.001118 0.03% Amr::timeStep() 10 0.0001619 0.0002535 0.0005798 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002717 0.0002803 0.0002894 0.01% Castro::clean_state() 62 0.0001359 0.0001607 0.0001732 0.00% Castro::finalize_advance() 10 8.349e-05 9.552e-05 0.0001213 0.00% StateDataPhysBCFunct::() 41 8.348e-05 9.164e-05 0.0001086 0.00% Castro::enforce_consistent_e() 1 7.828e-05 8.482e-05 9.915e-05 0.00% Castro::Castro() 1 7.04e-05 8.028e-05 9.524e-05 0.00% Amr::FinalizeInit() 1 3.652e-06 1.556e-05 9.112e-05 0.00% FabArray::ParallelCopy() 41 6.622e-05 7.445e-05 8.431e-05 0.00% FillPatchSingleLevel 41 6.204e-05 7.242e-05 8.36e-05 0.00% Castro::construct_old_source() 50 4.488e-05 6.953e-05 7.807e-05 0.00% Amr::writeSmallPlotFile() 1 3.203e-05 6.33e-05 7.714e-05 0.00% Castro::do_old_sources() 10 4.535e-05 5.811e-05 7.633e-05 0.00% Castro::do_new_sources() 10 4.999e-05 6.176e-05 7.283e-05 0.00% Amr::defBaseLevel() 1 2.874e-05 4.783e-05 6.863e-05 0.00% Castro::subcycle_advance_ctu() 10 3.976e-05 4.881e-05 5.846e-05 0.00% FabArrayBase::getCPC() 41 4.237e-05 5.033e-05 5.753e-05 0.00% Castro::apply_source_to_state() 20 3.464e-05 4.463e-05 5.227e-05 0.00% Castro::construct_new_gravity() 10 3.464e-05 4.03e-05 5.224e-05 0.00% Castro::construct_old_gravity() 10 3.301e-05 4.086e-05 4.678e-05 0.00% Castro::advance() 10 3.681e-05 3.968e-05 4.309e-05 0.00% Castro::post_timestep() 10 1.614e-05 2.455e-05 3.391e-05 0.00% Castro::enforce_speed_limit() 62 2.701e-05 2.888e-05 3.181e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.752e-05 2.253e-05 2.822e-05 0.00% FabArrayBase::CPC::define() 2 2.058e-05 2.258e-05 2.523e-05 0.00% Castro::check_for_nan() 20 1.962e-05 2.219e-05 2.397e-05 0.00% Gravity::swapTimeLevels() 10 9.305e-06 1.141e-05 1.498e-05 0.00% Gravity::set_mass_offset() 10 7.879e-06 9.99e-06 1.114e-05 0.00% Castro::create_source_corrector() 10 6.83e-06 9.33e-06 1.102e-05 0.00% Amr::initSubcycle() 1 9.104e-06 9.648e-06 1.068e-05 0.00% Castro::post_init() 1 2.837e-06 5.119e-06 1.042e-05 0.00% Castro::computeNewDt() 9 7.731e-06 8.737e-06 9.706e-06 0.00% Castro::FluxRegCrseInit 10 6.685e-06 7.71e-06 9.167e-06 0.00% Amr::initialInit() 1 1.061e-06 2.105e-06 6.943e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.534e-06 4.703e-06 6.575e-06 0.00% Castro::retry_advance_ctu() 10 4.517e-06 5.009e-06 6.144e-06 0.00% Castro::post_regrid() 1 1.721e-06 3.188e-06 5.901e-06 0.00% Castro::computeInitialDt() 2 3.324e-06 4.176e-06 5.133e-06 0.00% Amr::InitializeInit() 1 1.922e-06 2.479e-06 4.826e-06 0.00% Amr::init() 1 1.861e-06 2.389e-06 3.13e-06 0.00% Castro::FluxRegFineAdd() 10 2.073e-06 2.369e-06 2.653e-06 0.00% DistributionMapping::Distribute() 1 8.12e-07 1.006e-06 1.188e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.584 3.585 3.585 100.00% Amr::coarseTimeStep() 10 3.335 3.335 3.335 93.03% Amr::timeStep() 10 3.323 3.323 3.324 92.71% Castro::advance() 10 3.307 3.307 3.308 92.26% Castro::subcycle_advance_ctu() 10 3.227 3.234 3.247 90.56% Castro::do_advance_ctu() 10 3.227 3.234 3.247 90.56% Castro::construct_ctu_hydro_source() 10 2.277 2.352 2.426 67.66% Gravity::make_radial_gravity() 21 0.3248 0.3376 0.3515 9.80% Amr::init() 1 0.1789 0.2262 0.233 6.50% Gravity::get_new_grav_vector() 11 0.2168 0.2192 0.2206 6.15% Amr::initialInit() 1 0.1632 0.2107 0.2176 6.07% Castro::construct_old_gravity() 10 0.1917 0.1999 0.2118 5.91% Gravity::get_old_grav_vector() 10 0.1909 0.1992 0.2112 5.89% Castro::construct_new_gravity() 10 0.1934 0.1952 0.196 5.47% FillPatchIterator::Initialize 41 0.1554 0.1695 0.1922 5.36% Amr::InitializeInit() 1 0.06195 0.1459 0.1898 5.29% Amr::defBaseLevel() 1 0.06194 0.1459 0.1898 5.29% Castro::initialize_do_advance() 10 0.1568 0.1642 0.1699 4.74% FillPatchSingleLevel 41 0.1166 0.1264 0.1556 4.34% Castro::expand_state() 10 0.1085 0.1172 0.1272 3.55% Castro::clean_state() 62 0.1135 0.1176 0.1216 3.39% FabArray::ParallelCopy() 41 0.07779 0.08987 0.1188 3.31% Castro::initData() 1 0.04254 0.08113 0.1183 3.30% Castro::estTimeStep() 21 0.02068 0.06753 0.1114 3.11% Amr::FinalizeInit() 1 0.02784 0.06482 0.1033 2.88% FabArray::ParallelCopy_finish() 41 0.03505 0.04846 0.08155 2.27% FabArray::setVal() 143 0.05923 0.0688 0.07972 2.22% amrex::Copy() 193 0.05982 0.0713 0.07918 2.21% Castro::computeInitialDt() 2 0.002112 0.03929 0.07787 2.17% Castro::initialize_advance() 10 0.05583 0.06987 0.07638 2.13% Castro::do_new_sources() 10 0.06008 0.06681 0.07626 2.13% Castro::computeTemp() 63 0.06623 0.07027 0.07356 2.05% Amr::InitAmr() 1 0.0002915 0.007057 0.05436 1.52% DistributionMapping::SFCProcessorMapDoIt() 1 1.3e-05 0.04731 0.05407 1.51% DistributionMapping::LeastUsedCPUs() 1 8.28e-06 0.04731 0.05407 1.51% Castro::reset_internal_energy(MultiFab) 63 0.0479 0.05039 0.05278 1.47% Castro::reset_internal_energy(Fab) 1008 0.04763 0.05011 0.05249 1.46% Castro::do_old_sources() 10 0.04044 0.04549 0.0471 1.31% FabArray::ParallelCopy_nowait() 41 0.03714 0.04133 0.04267 1.19% Castro::normalize_species() 62 0.0415 0.04209 0.04265 1.19% StateDataPhysBCFunct::() 41 0.03338 0.03647 0.04083 1.14% StateData::FillBoundary(geom) 41 0.0333 0.03637 0.04075 1.14% Castro::construct_new_source() 50 0.02996 0.03262 0.03662 1.02% Castro::construct_new_gravity_source() 10 0.02376 0.02631 0.02995 0.84% Gravity::interpolate_monopole_grav() 21 0.02767 0.02808 0.02858 0.80% Amr::writePlotFile() 2 0.02588 0.02608 0.02629 0.73% Castro::post_init() 1 0.02479 0.02509 0.0253 0.71% VisMF::Write(FabArray) 2 0.01363 0.01425 0.01675 0.47% Castro::post_timestep() 10 0.01573 0.01611 0.01642 0.46% Castro::apply_source_to_state() 20 0.01238 0.01404 0.01479 0.41% FabArray::Saxpy() 20 0.01234 0.014 0.01474 0.41% Castro::check_for_nan() 20 0.01002 0.01115 0.01227 0.34% MultiFab::contains_nan() 20 0.009993 0.01113 0.01225 0.34% Castro::Castro() 1 0.01164 0.01167 0.01173 0.33% FabArray::setDomainBndry() 41 0.007974 0.01012 0.01164 0.32% Castro::construct_old_source() 50 0.00768 0.01045 0.01105 0.31% Castro::construct_old_gravity_source() 10 0.007635 0.01038 0.01097 0.31% Castro::computeNewDt() 9 0.008591 0.008596 0.008601 0.24% Castro::initMFs() 1 0.006794 0.006809 0.006832 0.19% Castro::enforce_min_density() 62 0.005709 0.006029 0.006242 0.17% AmrLevel::AmrLevel(dm) 1 0.005679 0.005713 0.005753 0.16% StateData::define() 4 0.00566 0.005691 0.005725 0.16% Castro::swap_state_time_levels() 10 0.003393 0.004438 0.004786 0.13% Castro::finalize_advance() 10 0.002927 0.003401 0.003839 0.11% Castro::finalize_do_advance() 10 0.0006637 0.001624 0.002013 0.06% Castro::buildMetrics() 1 0.001735 0.001748 0.001758 0.05% Castro::post_regrid() 1 0.001526 0.001588 0.001632 0.05% Castro::enforce_consistent_e() 1 7.828e-05 8.482e-05 9.915e-05 0.00% FabArrayBase::getCPC() 41 6.295e-05 7.291e-05 8.145e-05 0.00% Amr::writeSmallPlotFile() 1 3.203e-05 6.33e-05 7.714e-05 0.00% Castro::enforce_speed_limit() 62 2.701e-05 2.888e-05 3.181e-05 0.00% FabArrayBase::CPC::define() 2 2.058e-05 2.258e-05 2.523e-05 0.00% Gravity::swapTimeLevels() 10 9.305e-06 1.141e-05 1.498e-05 0.00% Gravity::set_mass_offset() 10 7.879e-06 9.99e-06 1.114e-05 0.00% Castro::create_source_corrector() 10 6.83e-06 9.33e-06 1.102e-05 0.00% Amr::initSubcycle() 1 9.104e-06 9.648e-06 1.068e-05 0.00% Castro::FluxRegCrseInit 10 6.685e-06 7.71e-06 9.167e-06 0.00% Castro::retry_advance_ctu() 10 4.517e-06 5.009e-06 6.144e-06 0.00% Castro::FluxRegFineAdd() 10 2.073e-06 2.369e-06 2.653e-06 0.00% DistributionMapping::Distribute() 1 8.12e-07 1.006e-06 1.188e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 30 B 36 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 15 KiB 15 KiB 17 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-38-g5729dd1c7eb2) finalized