MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-42-gd8e6401642ff) initialized Starting run at 06:41:33 UTC on 2023-02-20. Successfully read inputs file ... Castro git describe: 23.01-38-g5a867ca5c AMReX git describe: 23.02-42-gd8e640164 Microphysics git describe: 23.02-14-gdf3f5770 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016368647 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.388089866 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350605138 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.360218472 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341156712 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371390196 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332787663 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312754422 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314173183 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314321581 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314038037 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010364918 seconds Ending run at 06:41:37 UTC on 2023-02-20. Run time = 3.605881913 Run time without initialization = 3.417304436 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.604 ... 3.605 ... 3.606 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3390 2.3946 2.4321 67.45% Gravity::make_radial_gravity() 21 0.3202 0.3294 0.3362 9.32% Castro::do_advance_ctu() 10 0.05131 0.09178 0.1477 4.09% Castro::initData() 1 0.03922 0.07967 0.117 3.25% Castro::estTimeStep() 21 0.02333 0.06747 0.1152 3.19% amrex::Copy() 193 0.07384 0.07848 0.08372 2.32% FabArray::setVal() 143 0.0646 0.07232 0.0813 2.25% FabArray::ParallelCopy_finish() 41 0.03472 0.04492 0.05494 1.52% Castro::reset_internal_energy(Fab) 1008 0.04875 0.05064 0.05266 1.46% FabArray::ParallelCopy_nowait() 41 0.04134 0.04496 0.04616 1.28% Castro::normalize_species() 62 0.0414 0.04225 0.0428 1.19% StateData::FillBoundary(geom) 41 0.03554 0.03854 0.04247 1.18% FillPatchIterator::Initialize 41 0.03021 0.03717 0.03856 1.07% Castro::construct_new_gravity_source() 10 0.02421 0.02711 0.03047 0.85% Gravity::interpolate_monopole_grav() 21 0.02804 0.02849 0.029 0.80% Castro::initialize_do_advance() 10 0.01822 0.01938 0.02129 0.59% Castro::computeTemp() 63 0.01939 0.02019 0.02079 0.58% VisMF::Write(FabArray) 2 0.01335 0.01407 0.01715 0.48% FabArray::Saxpy() 20 0.01435 0.01461 0.01498 0.42% Castro::initialize_advance() 10 0.009609 0.01188 0.01437 0.40% FabArray::setDomainBndry() 41 0.008875 0.01194 0.01308 0.36% MultiFab::contains_nan() 20 0.01107 0.01168 0.01274 0.35% Castro::construct_old_gravity_source() 10 0.01056 0.01107 0.01153 0.32% Amr::writePlotFile() 2 0.00692 0.01032 0.01109 0.31% Castro::initMFs() 1 0.006961 0.007552 0.008137 0.23% main() 1 0.004795 0.005842 0.006707 0.19% Castro::construct_new_source() 50 0.00624 0.006413 0.006624 0.18% StateData::define() 4 0.005744 0.006155 0.006604 0.18% Castro::enforce_min_density() 62 0.005986 0.006155 0.006349 0.18% Castro::swap_state_time_levels() 10 0.003498 0.004791 0.005528 0.15% Gravity::get_new_grav_vector() 11 0.003158 0.004034 0.004391 0.12% Gravity::get_old_grav_vector() 10 0.001902 0.002695 0.002957 0.08% Amr::coarseTimeStep() 10 0.000937 0.001909 0.002742 0.08% Castro::finalize_do_advance() 10 0.001475 0.001694 0.001962 0.05% Castro::buildMetrics() 1 0.001654 0.001791 0.001886 0.05% Castro::expand_state() 10 0.0006598 0.0007884 0.0009033 0.03% Amr::timeStep() 10 0.0001746 0.0002392 0.0004687 0.01% Amr::InitAmr() 1 0.0002815 0.000312 0.0004169 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002738 0.0002817 0.0002851 0.01% Castro::clean_state() 62 0.000135 0.0001591 0.0001939 0.01% DistributionMapping::LeastUsedCPUs() 1 6.786e-06 0.0001029 0.0001321 0.00% Castro::finalize_advance() 10 7.665e-05 9.26e-05 0.0001095 0.00% Castro::enforce_consistent_e() 1 7.822e-05 8.78e-05 0.0001072 0.00% StateDataPhysBCFunct::() 41 8.389e-05 9.436e-05 0.0001052 0.00% Castro::construct_old_source() 50 5.602e-05 7.192e-05 8.79e-05 0.00% FabArray::ParallelCopy() 41 6.494e-05 7.507e-05 8.396e-05 0.00% Castro::do_new_sources() 10 5.341e-05 6.35e-05 8.336e-05 0.00% FillPatchSingleLevel 41 6.741e-05 7.361e-05 8.266e-05 0.00% Amr::writeSmallPlotFile() 1 3.208e-05 6.016e-05 8.111e-05 0.00% Castro::Castro() 1 5.854e-05 6.632e-05 7.789e-05 0.00% Castro::do_old_sources() 10 4.993e-05 6.076e-05 7.053e-05 0.00% Amr::FinalizeInit() 1 3.318e-06 1.265e-05 7.016e-05 0.00% Castro::subcycle_advance_ctu() 10 3.995e-05 4.753e-05 6.715e-05 0.00% Amr::defBaseLevel() 1 2.961e-05 4.261e-05 5.864e-05 0.00% FabArrayBase::getCPC() 41 4.219e-05 4.888e-05 5.579e-05 0.00% Castro::construct_new_gravity() 10 3.186e-05 3.919e-05 4.805e-05 0.00% Castro::apply_source_to_state() 20 3.608e-05 4.169e-05 4.786e-05 0.00% Castro::construct_old_gravity() 10 3.553e-05 4.04e-05 4.541e-05 0.00% Castro::advance() 10 3.67e-05 4e-05 4.518e-05 0.00% Castro::post_timestep() 10 1.666e-05 2.438e-05 3.533e-05 0.00% Castro::enforce_speed_limit() 62 2.607e-05 2.843e-05 3.059e-05 0.00% FabArrayBase::CPC::define() 2 2.163e-05 2.468e-05 2.973e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.523e-05 2.087e-05 2.501e-05 0.00% Castro::check_for_nan() 20 2.085e-05 2.248e-05 2.481e-05 0.00% Amr::initSubcycle() 1 9.255e-06 1.196e-05 2.381e-05 0.00% Gravity::swapTimeLevels() 10 9.1e-06 1.227e-05 1.697e-05 0.00% Castro::create_source_corrector() 10 8.951e-06 1.096e-05 1.288e-05 0.00% Gravity::set_mass_offset() 10 8.896e-06 1.016e-05 1.223e-05 0.00% Castro::computeNewDt() 9 7.234e-06 8.726e-06 1.11e-05 0.00% Castro::FluxRegCrseInit 10 7.391e-06 9.434e-06 1.092e-05 0.00% Amr::init() 1 1.809e-06 3.019e-06 8.806e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.909e-06 4.6e-06 6.606e-06 0.00% Castro::retry_advance_ctu() 10 4.401e-06 5.388e-06 6.104e-06 0.00% Castro::computeInitialDt() 2 3.645e-06 4.232e-06 5.109e-06 0.00% Amr::InitializeInit() 1 2.134e-06 2.727e-06 4.771e-06 0.00% Castro::post_init() 1 2.807e-06 3.604e-06 4.712e-06 0.00% Castro::post_regrid() 1 1.696e-06 2.858e-06 3.856e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.507e-06 3.255e-06 0.00% Amr::initialInit() 1 1.085e-06 1.424e-06 1.799e-06 0.00% DistributionMapping::Distribute() 1 8.46e-07 1.129e-06 1.286e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.604 3.605 3.606 100.00% Amr::coarseTimeStep() 10 3.4 3.4 3.4 94.30% Amr::timeStep() 10 3.388 3.389 3.39 94.00% Castro::advance() 10 3.372 3.373 3.373 93.54% Castro::subcycle_advance_ctu() 10 3.29 3.294 3.298 91.46% Castro::do_advance_ctu() 10 3.29 3.294 3.298 91.46% Castro::construct_ctu_hydro_source() 10 2.339 2.395 2.432 67.45% Gravity::make_radial_gravity() 21 0.3377 0.3474 0.3536 9.81% Gravity::get_new_grav_vector() 11 0.2257 0.2274 0.2295 6.36% Castro::construct_old_gravity() 10 0.1991 0.2069 0.2117 5.87% Gravity::get_old_grav_vector() 10 0.1983 0.2061 0.2111 5.85% Castro::construct_new_gravity() 10 0.1985 0.1995 0.201 5.57% FillPatchIterator::Initialize 41 0.1665 0.1778 0.1901 5.27% Amr::init() 1 0.188 0.1881 0.1881 5.22% Castro::initialize_do_advance() 10 0.1641 0.1725 0.1822 5.05% Amr::initialInit() 1 0.1711 0.1712 0.1716 4.76% Amr::InitializeInit() 1 0.06085 0.1015 0.1397 3.87% Amr::defBaseLevel() 1 0.06084 0.1015 0.1397 3.87% FillPatchSingleLevel 41 0.1161 0.1287 0.1392 3.86% Castro::expand_state() 10 0.1134 0.1221 0.1321 3.66% Castro::clean_state() 62 0.1163 0.1187 0.1212 3.36% Castro::initData() 1 0.043 0.08363 0.1207 3.35% Castro::estTimeStep() 21 0.02333 0.06747 0.1152 3.19% Amr::FinalizeInit() 1 0.03137 0.06977 0.1106 3.07% FabArray::ParallelCopy() 41 0.08005 0.09003 0.09651 2.68% amrex::Copy() 193 0.07384 0.07848 0.08372 2.32% FabArray::setVal() 143 0.0646 0.07232 0.0813 2.25% Castro::computeInitialDt() 2 0.002152 0.04036 0.08088 2.24% Castro::initialize_advance() 10 0.07106 0.07488 0.07938 2.20% Castro::do_new_sources() 10 0.06137 0.06891 0.0773 2.14% Castro::computeTemp() 63 0.06919 0.07111 0.07342 2.04% FabArray::ParallelCopy_finish() 41 0.03472 0.04492 0.05494 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04903 0.05092 0.05295 1.47% Castro::reset_internal_energy(Fab) 1008 0.04875 0.05064 0.05266 1.46% Castro::do_old_sources() 10 0.0465 0.0473 0.04783 1.33% FabArray::ParallelCopy_nowait() 41 0.04141 0.04503 0.04624 1.28% Castro::normalize_species() 62 0.0414 0.04225 0.0428 1.19% StateDataPhysBCFunct::() 41 0.03563 0.03863 0.04258 1.18% StateData::FillBoundary(geom) 41 0.03554 0.03854 0.04247 1.18% Castro::construct_new_source() 50 0.03045 0.03353 0.0371 1.03% Castro::construct_new_gravity_source() 10 0.02421 0.02711 0.03047 0.85% Castro::post_init() 1 0.02877 0.02898 0.02925 0.81% Gravity::interpolate_monopole_grav() 21 0.02804 0.02849 0.029 0.80% Amr::writePlotFile() 2 0.02692 0.02729 0.02749 0.76% VisMF::Write(FabArray) 2 0.01335 0.01407 0.01715 0.48% Castro::post_timestep() 10 0.01565 0.0159 0.01635 0.45% Castro::apply_source_to_state() 20 0.01439 0.01465 0.01503 0.42% FabArray::Saxpy() 20 0.01435 0.01461 0.01498 0.42% FabArray::setDomainBndry() 41 0.008875 0.01194 0.01308 0.36% Castro::check_for_nan() 20 0.01109 0.0117 0.01276 0.35% MultiFab::contains_nan() 20 0.01107 0.01168 0.01274 0.35% Castro::Castro() 1 0.01068 0.01151 0.01227 0.34% Castro::construct_old_source() 50 0.01062 0.01114 0.01161 0.32% Castro::construct_old_gravity_source() 10 0.01056 0.01107 0.01153 0.32% Castro::computeNewDt() 9 0.008476 0.008485 0.008493 0.24% Castro::initMFs() 1 0.006961 0.007552 0.008137 0.23% AmrLevel::AmrLevel(dm) 1 0.005765 0.006176 0.006625 0.18% StateData::define() 4 0.005744 0.006155 0.006604 0.18% Castro::enforce_min_density() 62 0.005986 0.006155 0.006349 0.18% Castro::swap_state_time_levels() 10 0.003498 0.004791 0.005528 0.15% Castro::finalize_advance() 10 0.002966 0.003392 0.003798 0.11% Castro::buildMetrics() 1 0.001788 0.001939 0.002046 0.06% Castro::post_regrid() 1 0.001516 0.001626 0.001965 0.05% Castro::finalize_do_advance() 10 0.001475 0.001694 0.001962 0.05% Amr::InitAmr() 1 0.0002915 0.0003239 0.0004262 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.162e-05 0.0001086 0.00014 0.00% DistributionMapping::LeastUsedCPUs() 1 6.786e-06 0.0001029 0.0001321 0.00% Castro::enforce_consistent_e() 1 7.822e-05 8.78e-05 0.0001072 0.00% FabArrayBase::getCPC() 41 6.384e-05 7.356e-05 8.552e-05 0.00% Amr::writeSmallPlotFile() 1 3.208e-05 6.016e-05 8.111e-05 0.00% Castro::enforce_speed_limit() 62 2.607e-05 2.843e-05 3.059e-05 0.00% FabArrayBase::CPC::define() 2 2.163e-05 2.468e-05 2.973e-05 0.00% Amr::initSubcycle() 1 9.255e-06 1.196e-05 2.381e-05 0.00% Gravity::swapTimeLevels() 10 9.1e-06 1.227e-05 1.697e-05 0.00% Castro::create_source_corrector() 10 8.951e-06 1.096e-05 1.288e-05 0.00% Gravity::set_mass_offset() 10 8.896e-06 1.016e-05 1.223e-05 0.00% Castro::FluxRegCrseInit 10 7.391e-06 9.434e-06 1.092e-05 0.00% Castro::retry_advance_ctu() 10 4.401e-06 5.388e-06 6.104e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.507e-06 3.255e-06 0.00% DistributionMapping::Distribute() 1 8.46e-07 1.129e-06 1.286e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 41 B 56 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 16 KiB 17 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-42-gd8e6401642ff) finalized