MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-42-gd8e6401642ff) initialized Starting run at 06:41:34 UTC on 2023-02-21. Successfully read inputs file ... Castro git describe: 23.01-38-g5a867ca5c AMReX git describe: 23.02-42-gd8e640164 Microphysics git describe: 23.02-15-g70ba11ce reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016657976 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.38297105 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.380709988 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33150659 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333229903 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36155332 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327575472 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311494444 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313624208 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312987953 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317793077 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01055489 seconds Ending run at 06:41:37 UTC on 2023-02-21. Run time = 3.610272796 Run time without initialization = 3.390557305 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.61 ... 3.61 ... 3.61 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3257 2.3822 2.4404 67.60% Gravity::make_radial_gravity() 21 0.3124 0.3224 0.3388 9.38% Castro::do_advance_ctu() 10 0.05088 0.1109 0.17 4.71% Castro::initData() 1 0.03859 0.07725 0.1146 3.17% Castro::estTimeStep() 21 0.03465 0.06737 0.108 2.99% amrex::Copy() 193 0.05977 0.07318 0.08256 2.29% FabArray::ParallelCopy_finish() 41 0.03447 0.04556 0.07678 2.13% FabArray::setVal() 143 0.05795 0.06734 0.07622 2.11% Castro::reset_internal_energy(Fab) 1008 0.04884 0.05002 0.05107 1.41% FabArray::ParallelCopy_nowait() 41 0.03773 0.04205 0.04357 1.21% Castro::normalize_species() 62 0.04156 0.04214 0.04282 1.19% StateData::FillBoundary(geom) 41 0.03399 0.03714 0.04197 1.16% FillPatchIterator::Initialize 41 0.02922 0.03446 0.03666 1.02% Amr::InitAmr() 1 0.0002684 0.00474 0.03598 1.00% DistributionMapping::LeastUsedCPUs() 1 1.032e-05 0.03125 0.03572 0.99% Castro::construct_new_gravity_source() 10 0.02397 0.02619 0.02954 0.82% Gravity::interpolate_monopole_grav() 21 0.0278 0.02803 0.02845 0.79% Castro::computeTemp() 63 0.01943 0.02003 0.02075 0.57% Castro::initialize_do_advance() 10 0.01264 0.01746 0.01887 0.52% VisMF::Write(FabArray) 2 0.01413 0.01491 0.01796 0.50% FabArray::Saxpy() 20 0.0125 0.01381 0.01463 0.41% Castro::initialize_advance() 10 0.004156 0.009936 0.01347 0.37% FabArray::setDomainBndry() 41 0.007681 0.01071 0.01235 0.34% MultiFab::contains_nan() 20 0.01003 0.01097 0.01217 0.34% Castro::construct_old_gravity_source() 10 0.007718 0.01046 0.01118 0.31% Amr::writePlotFile() 2 0.006784 0.00981 0.01064 0.29% Castro::initMFs() 1 0.00693 0.007208 0.008901 0.25% Castro::construct_new_source() 50 0.005763 0.006218 0.006515 0.18% StateData::define() 4 0.005689 0.005815 0.006506 0.18% Castro::enforce_min_density() 62 0.005703 0.00602 0.006424 0.18% main() 1 0.00521 0.005539 0.005777 0.16% Castro::swap_state_time_levels() 10 0.003335 0.004494 0.004715 0.13% Gravity::get_new_grav_vector() 11 0.003246 0.003724 0.003975 0.11% Amr::coarseTimeStep() 10 0.001569 0.002284 0.003056 0.08% Gravity::get_old_grav_vector() 10 0.001854 0.002512 0.002941 0.08% Castro::buildMetrics() 1 0.001598 0.001649 0.001889 0.05% Castro::finalize_do_advance() 10 0.0005749 0.001453 0.00179 0.05% Castro::expand_state() 10 0.000707 0.0008916 0.001007 0.03% Amr::timeStep() 10 0.0001663 0.0002477 0.0005424 0.02% Castro::reset_internal_energy(MultiFab) 63 0.000275 0.00029 0.0003188 0.01% Castro::clean_state() 62 0.0001473 0.0001589 0.0001765 0.00% Castro::finalize_advance() 10 7.997e-05 9.616e-05 0.0001113 0.00% StateDataPhysBCFunct::() 41 8.867e-05 9.287e-05 0.0001007 0.00% Castro::enforce_consistent_e() 1 7.363e-05 8.643e-05 0.0001001 0.00% Amr::FinalizeInit() 1 4.141e-06 1.569e-05 9.048e-05 0.00% Castro::Castro() 1 5.333e-05 7.496e-05 9.044e-05 0.00% FabArray::ParallelCopy() 41 6.966e-05 7.659e-05 8.861e-05 0.00% Castro::do_old_sources() 10 5.246e-05 6.333e-05 8.625e-05 0.00% Castro::construct_old_source() 50 5.591e-05 7.09e-05 8.502e-05 0.00% FillPatchSingleLevel 41 6.868e-05 7.413e-05 8.245e-05 0.00% Amr::writeSmallPlotFile() 1 3.224e-05 6.564e-05 8.072e-05 0.00% Castro::do_new_sources() 10 5.694e-05 6.437e-05 7.428e-05 0.00% FabArrayBase::getCPC() 41 4.3e-05 5.055e-05 5.947e-05 0.00% Castro::subcycle_advance_ctu() 10 4.17e-05 4.803e-05 5.53e-05 0.00% Castro::apply_source_to_state() 20 3.872e-05 4.595e-05 5.483e-05 0.00% Amr::defBaseLevel() 1 2.909e-05 4.028e-05 5.355e-05 0.00% Castro::construct_old_gravity() 10 3.611e-05 3.96e-05 4.534e-05 0.00% Castro::construct_new_gravity() 10 3.212e-05 3.969e-05 4.449e-05 0.00% Castro::advance() 10 3.741e-05 4.019e-05 4.417e-05 0.00% Castro::post_timestep() 10 1.792e-05 2.654e-05 3.476e-05 0.00% Castro::enforce_speed_limit() 62 2.41e-05 2.832e-05 3.168e-05 0.00% FabArrayBase::CPC::define() 2 2.119e-05 2.526e-05 2.967e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.321e-05 2.514e-05 2.751e-05 0.00% Castro::check_for_nan() 20 2.101e-05 2.287e-05 2.505e-05 0.00% Gravity::swapTimeLevels() 10 9.821e-06 1.141e-05 1.327e-05 0.00% Gravity::set_mass_offset() 10 8.541e-06 1.042e-05 1.167e-05 0.00% Castro::create_source_corrector() 10 8.507e-06 9.549e-06 1.138e-05 0.00% Amr::initSubcycle() 1 8.976e-06 9.615e-06 1.071e-05 0.00% Castro::FluxRegCrseInit 10 6.661e-06 8.63e-06 1.068e-05 0.00% Castro::post_init() 1 2.825e-06 4.627e-06 9.988e-06 0.00% Castro::computeNewDt() 9 7.697e-06 8.33e-06 8.729e-06 0.00% Castro::post_regrid() 1 1.758e-06 3.78e-06 7.402e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.996e-06 5.094e-06 6.742e-06 0.00% Castro::retry_advance_ctu() 10 4.577e-06 5.49e-06 6.473e-06 0.00% Amr::InitializeInit() 1 1.833e-06 2.663e-06 5.597e-06 0.00% Castro::computeInitialDt() 2 3.608e-06 4.27e-06 5.126e-06 0.00% Castro::FluxRegFineAdd() 10 1.863e-06 2.41e-06 2.966e-06 0.00% Amr::init() 1 1.888e-06 2.292e-06 2.661e-06 0.00% Amr::initialInit() 1 9.28e-07 1.359e-06 1.781e-06 0.00% DistributionMapping::Distribute() 1 8.29e-07 9.852e-07 1.135e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.61 3.61 3.61 100.00% Amr::coarseTimeStep() 10 3.374 3.374 3.374 93.46% Amr::timeStep() 10 3.362 3.362 3.363 93.15% Castro::advance() 10 3.345 3.346 3.346 92.69% Castro::subcycle_advance_ctu() 10 3.266 3.273 3.283 90.94% Castro::do_advance_ctu() 10 3.266 3.273 3.283 90.94% Castro::construct_ctu_hydro_source() 10 2.326 2.382 2.44 67.60% Gravity::make_radial_gravity() 21 0.3287 0.3392 0.3521 9.75% Gravity::get_new_grav_vector() 11 0.2211 0.2226 0.2238 6.20% Amr::init() 1 0.1836 0.2148 0.2193 6.07% Castro::construct_old_gravity() 10 0.1924 0.2 0.2109 5.84% Gravity::get_old_grav_vector() 10 0.1916 0.1993 0.2102 5.82% Amr::initialInit() 1 0.1667 0.1981 0.2026 5.61% Castro::construct_new_gravity() 10 0.1946 0.1956 0.1962 5.44% FillPatchIterator::Initialize 41 0.1611 0.1702 0.1869 5.18% Amr::InitializeInit() 1 0.06372 0.1301 0.1718 4.76% Amr::defBaseLevel() 1 0.06371 0.1301 0.1718 4.76% Castro::initialize_do_advance() 10 0.1558 0.1642 0.1701 4.71% FillPatchSingleLevel 41 0.1141 0.1251 0.15 4.15% Castro::expand_state() 10 0.108 0.1164 0.1223 3.39% Castro::clean_state() 62 0.1158 0.1178 0.1195 3.31% Castro::initData() 1 0.04255 0.0813 0.1189 3.29% FabArray::ParallelCopy() 41 0.07665 0.08777 0.1147 3.18% Castro::estTimeStep() 21 0.03465 0.06737 0.108 2.99% Amr::FinalizeInit() 1 0.03078 0.06798 0.107 2.96% amrex::Copy() 193 0.05977 0.07318 0.08256 2.29% Castro::computeInitialDt() 2 0.002109 0.03942 0.07839 2.17% Castro::initialize_advance() 10 0.05853 0.06983 0.07681 2.13% FabArray::ParallelCopy_finish() 41 0.03447 0.04556 0.07678 2.13% FabArray::setVal() 143 0.05795 0.06734 0.07622 2.11% Castro::do_new_sources() 10 0.06075 0.06547 0.07337 2.03% Castro::computeTemp() 63 0.06878 0.07034 0.07189 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04913 0.05031 0.05137 1.42% Castro::reset_internal_energy(Fab) 1008 0.04884 0.05002 0.05107 1.41% Castro::do_old_sources() 10 0.0413 0.0456 0.04665 1.29% FabArray::ParallelCopy_nowait() 41 0.03781 0.04213 0.04364 1.21% Castro::normalize_species() 62 0.04156 0.04214 0.04282 1.19% StateDataPhysBCFunct::() 41 0.03408 0.03723 0.04206 1.17% StateData::FillBoundary(geom) 41 0.03399 0.03714 0.04197 1.16% Castro::construct_new_source() 50 0.03006 0.03241 0.03601 1.00% Amr::InitAmr() 1 0.0002777 0.004749 0.03599 1.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.537e-05 0.03126 0.03573 0.99% DistributionMapping::LeastUsedCPUs() 1 1.032e-05 0.03125 0.03572 0.99% Castro::construct_new_gravity_source() 10 0.02397 0.02619 0.02954 0.82% Gravity::interpolate_monopole_grav() 21 0.0278 0.02803 0.02845 0.79% Castro::post_init() 1 0.02773 0.02805 0.02823 0.78% Amr::writePlotFile() 2 0.02728 0.02739 0.02753 0.76% VisMF::Write(FabArray) 2 0.01413 0.01491 0.01796 0.50% Castro::post_timestep() 10 0.01556 0.01607 0.01692 0.47% Castro::apply_source_to_state() 20 0.01254 0.01386 0.01467 0.41% FabArray::Saxpy() 20 0.0125 0.01381 0.01463 0.41% Castro::Castro() 1 0.01145 0.01165 0.01248 0.35% FabArray::setDomainBndry() 41 0.007681 0.01071 0.01235 0.34% Castro::check_for_nan() 20 0.01005 0.01099 0.01219 0.34% MultiFab::contains_nan() 20 0.01003 0.01097 0.01217 0.34% Castro::construct_old_source() 50 0.007774 0.01053 0.01125 0.31% Castro::construct_old_gravity_source() 10 0.007718 0.01046 0.01118 0.31% Castro::initMFs() 1 0.00693 0.007208 0.008901 0.25% Castro::computeNewDt() 9 0.008529 0.008536 0.008541 0.24% AmrLevel::AmrLevel(dm) 1 0.005714 0.00584 0.006531 0.18% StateData::define() 4 0.005689 0.005815 0.006506 0.18% Castro::enforce_min_density() 62 0.005703 0.00602 0.006424 0.18% Castro::swap_state_time_levels() 10 0.003335 0.004494 0.004715 0.13% Castro::finalize_advance() 10 0.003014 0.003415 0.003814 0.11% Castro::buildMetrics() 1 0.001737 0.001794 0.002062 0.06% Castro::post_regrid() 1 0.001568 0.001651 0.002004 0.06% Castro::finalize_do_advance() 10 0.0005749 0.001453 0.00179 0.05% Castro::enforce_consistent_e() 1 7.363e-05 8.643e-05 0.0001001 0.00% FabArrayBase::getCPC() 41 6.856e-05 7.581e-05 8.306e-05 0.00% Amr::writeSmallPlotFile() 1 3.224e-05 6.564e-05 8.072e-05 0.00% Castro::enforce_speed_limit() 62 2.41e-05 2.832e-05 3.168e-05 0.00% FabArrayBase::CPC::define() 2 2.119e-05 2.526e-05 2.967e-05 0.00% Gravity::swapTimeLevels() 10 9.821e-06 1.141e-05 1.327e-05 0.00% Gravity::set_mass_offset() 10 8.541e-06 1.042e-05 1.167e-05 0.00% Castro::create_source_corrector() 10 8.507e-06 9.549e-06 1.138e-05 0.00% Amr::initSubcycle() 1 8.976e-06 9.615e-06 1.071e-05 0.00% Castro::FluxRegCrseInit 10 6.661e-06 8.63e-06 1.068e-05 0.00% Castro::retry_advance_ctu() 10 4.577e-06 5.49e-06 6.473e-06 0.00% Castro::FluxRegFineAdd() 10 1.863e-06 2.41e-06 2.966e-06 0.00% DistributionMapping::Distribute() 1 8.29e-07 9.852e-07 1.135e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 15 KiB 16 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-42-gd8e6401642ff) finalized