MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-45-g42acecf9c7f7) initialized Starting run at 16:35:29 UTC on 2023-02-25. Successfully read inputs file ... Castro git describe: 23.01-45-g8e6bc90ba AMReX git describe: 23.02-45-g42acecf9c Microphysics git describe: 23.02-16-g3e0cd993 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015224843 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.379970868 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339642646 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340291718 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.347560226 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.364020308 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.333941523 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317470734 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317402514 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.318115071 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318288821 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.036318815 seconds Ending run at 16:35:33 UTC on 2023-02-25. Run time = 3.603930939 Run time without initialization = 3.420246684 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.603 ... 3.603 ... 3.604 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2877 2.3732 2.4362 67.60% Gravity::make_radial_gravity() 21 0.3223 0.3332 0.3485 9.67% Castro::do_advance_ctu() 10 0.04699 0.1126 0.2012 5.58% Castro::initData() 1 0.03965 0.08058 0.1172 3.25% Castro::estTimeStep() 21 0.02186 0.06712 0.1121 3.11% FabArray::setVal() 143 0.06303 0.06915 0.07951 2.21% FabArray::ParallelCopy_finish() 41 0.03281 0.047 0.0773 2.14% amrex::Copy() 193 0.0615 0.07098 0.07529 2.09% Castro::reset_internal_energy(Fab) 1008 0.04825 0.05025 0.05295 1.47% FabArray::ParallelCopy_nowait() 41 0.03552 0.04122 0.04344 1.21% Castro::normalize_species() 62 0.04156 0.04221 0.04335 1.20% StateData::FillBoundary(geom) 41 0.03181 0.03562 0.03987 1.11% FillPatchIterator::Initialize 41 0.02829 0.03333 0.03651 1.01% Amr::writePlotFile() 2 0.03243 0.03481 0.03527 0.98% Castro::construct_new_gravity_source() 10 0.02354 0.02586 0.0293 0.81% Gravity::interpolate_monopole_grav() 21 0.02804 0.02847 0.02889 0.80% Castro::computeTemp() 63 0.01892 0.01994 0.02124 0.59% Castro::initialize_do_advance() 10 0.01149 0.01665 0.01941 0.54% VisMF::Write(FabArray) 2 0.01364 0.01414 0.01721 0.48% FabArray::Saxpy() 20 0.01198 0.01355 0.01434 0.40% Castro::initialize_advance() 10 0.00827 0.0109 0.01423 0.39% FabArray::setDomainBndry() 41 0.007866 0.01035 0.01175 0.33% MultiFab::contains_nan() 20 0.01047 0.01099 0.01133 0.31% Castro::construct_old_gravity_source() 10 0.007316 0.009946 0.01052 0.29% Castro::initMFs() 1 0.00704 0.007447 0.008626 0.24% StateData::define() 4 0.005757 0.005952 0.006511 0.18% Castro::enforce_min_density() 62 0.005896 0.006122 0.006458 0.18% Castro::construct_new_source() 50 0.005463 0.006226 0.006456 0.18% main() 1 0.005118 0.005747 0.006367 0.18% Gravity::get_new_grav_vector() 11 0.003068 0.003867 0.005517 0.15% Castro::swap_state_time_levels() 10 0.002174 0.004437 0.004779 0.13% Amr::coarseTimeStep() 10 0.001908 0.002523 0.002964 0.08% Gravity::get_old_grav_vector() 10 0.001923 0.002365 0.002707 0.08% Castro::finalize_do_advance() 10 0.0005571 0.001651 0.002145 0.06% Castro::buildMetrics() 1 0.001642 0.001703 0.001857 0.05% Castro::expand_state() 10 0.0006438 0.0008927 0.001085 0.03% Amr::InitAmr() 1 0.0002549 0.0002932 0.0004783 0.01% Amr::timeStep() 10 0.000176 0.0002351 0.0004727 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002712 0.0002872 0.000333 0.01% DistributionMapping::LeastUsedCPUs() 1 7.409e-06 0.0001926 0.0002327 0.01% Castro::clean_state() 62 0.0001412 0.0001517 0.0001754 0.00% StateDataPhysBCFunct::() 41 9.143e-05 0.0001061 0.0001279 0.00% Castro::finalize_advance() 10 8.584e-05 9.562e-05 0.000118 0.00% Castro::enforce_consistent_e() 1 8.321e-05 9.028e-05 0.0001051 0.00% Castro::Castro() 1 6.058e-05 7.954e-05 0.0001004 0.00% Castro::construct_old_source() 50 5.285e-05 6.899e-05 8.555e-05 0.00% FabArray::ParallelCopy() 41 6.603e-05 7.221e-05 8.255e-05 0.00% FillPatchSingleLevel 41 6.127e-05 6.916e-05 8.091e-05 0.00% Amr::FinalizeInit() 1 4.602e-06 1.415e-05 7.857e-05 0.00% FabArrayBase::getCPC() 41 4.831e-05 5.551e-05 7.246e-05 0.00% Amr::writeSmallPlotFile() 1 3.683e-05 4.948e-05 7.074e-05 0.00% Castro::do_old_sources() 10 4.908e-05 5.98e-05 6.872e-05 0.00% Castro::do_new_sources() 10 5.128e-05 5.896e-05 6.703e-05 0.00% Castro::subcycle_advance_ctu() 10 3.602e-05 4.653e-05 5.831e-05 0.00% Castro::construct_old_gravity() 10 3.704e-05 4.415e-05 5.269e-05 0.00% Castro::apply_source_to_state() 20 3.561e-05 4.433e-05 5.234e-05 0.00% Castro::advance() 10 3.904e-05 4.31e-05 4.873e-05 0.00% Amr::defBaseLevel() 1 2.761e-05 3.559e-05 4.846e-05 0.00% Castro::construct_new_gravity() 10 3.624e-05 3.852e-05 4.81e-05 0.00% Castro::enforce_speed_limit() 62 2.734e-05 3.1e-05 3.898e-05 0.00% Castro::post_timestep() 10 1.593e-05 2.441e-05 3.872e-05 0.00% FabArrayBase::CPC::define() 2 1.955e-05 2.559e-05 3.398e-05 0.00% Castro::check_for_nan() 20 2.013e-05 2.248e-05 2.874e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.596e-05 2.001e-05 2.51e-05 0.00% Gravity::swapTimeLevels() 10 1.01e-05 1.108e-05 1.217e-05 0.00% Castro::FluxRegCrseInit 10 5.542e-06 8.326e-06 1.185e-05 0.00% Castro::create_source_corrector() 10 8.308e-06 9.515e-06 1.17e-05 0.00% Gravity::set_mass_offset() 10 8.791e-06 9.983e-06 1.126e-05 0.00% Castro::computeNewDt() 9 7.249e-06 9.042e-06 1.106e-05 0.00% Amr::initSubcycle() 1 8.784e-06 9.445e-06 1.031e-05 0.00% Castro::retry_advance_ctu() 10 4.612e-06 5.468e-06 6.853e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.728e-06 4.609e-06 6.268e-06 0.00% Amr::InitializeInit() 1 2.034e-06 2.651e-06 5.476e-06 0.00% Castro::post_init() 1 3.032e-06 4.054e-06 5.399e-06 0.00% Castro::computeInitialDt() 2 3.69e-06 4.078e-06 4.649e-06 0.00% Castro::post_regrid() 1 2.028e-06 2.59e-06 3.307e-06 0.00% Castro::FluxRegFineAdd() 10 1.973e-06 2.466e-06 3.122e-06 0.00% Amr::init() 1 1.883e-06 2.2e-06 2.855e-06 0.00% DistributionMapping::Distribute() 1 1.031e-06 1.259e-06 2.147e-06 0.00% Amr::initialInit() 1 9.78e-07 1.424e-06 2.095e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.603 3.603 3.604 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 93.72% Amr::timeStep() 10 3.365 3.365 3.366 93.39% Castro::advance() 10 3.348 3.349 3.35 92.95% Castro::subcycle_advance_ctu() 10 3.266 3.274 3.281 91.04% Castro::do_advance_ctu() 10 3.266 3.274 3.281 91.03% Castro::construct_ctu_hydro_source() 10 2.288 2.373 2.436 67.60% Gravity::make_radial_gravity() 21 0.3385 0.3497 0.3629 10.07% Gravity::get_new_grav_vector() 11 0.2249 0.2266 0.2282 6.33% Castro::construct_old_gravity() 10 0.1981 0.2051 0.2152 5.97% Gravity::get_old_grav_vector() 10 0.1974 0.2044 0.2146 5.95% Castro::construct_new_gravity() 10 0.2002 0.2013 0.2024 5.61% Amr::init() 1 0.1831 0.1832 0.1833 5.09% FillPatchIterator::Initialize 41 0.1513 0.1679 0.1812 5.03% Castro::initialize_do_advance() 10 0.1501 0.1627 0.1715 4.76% Amr::initialInit() 1 0.1677 0.168 0.1681 4.67% FillPatchSingleLevel 41 0.1126 0.1242 0.1451 4.03% Amr::InitializeInit() 1 0.06143 0.1026 0.139 3.86% Amr::defBaseLevel() 1 0.06142 0.1025 0.139 3.86% Castro::expand_state() 10 0.1024 0.1159 0.1243 3.45% Castro::clean_state() 62 0.1149 0.118 0.1223 3.39% Castro::initData() 1 0.04391 0.08472 0.1216 3.37% FabArray::ParallelCopy() 41 0.07468 0.08837 0.113 3.14% Castro::estTimeStep() 21 0.02186 0.06712 0.1121 3.11% Amr::FinalizeInit() 1 0.02914 0.06541 0.1066 2.96% Castro::computeInitialDt() 2 0.002101 0.03851 0.07968 2.21% FabArray::setVal() 143 0.06303 0.06915 0.07951 2.21% Castro::initialize_advance() 10 0.06348 0.07147 0.07919 2.20% FabArray::ParallelCopy_finish() 41 0.03281 0.047 0.0773 2.14% amrex::Copy() 193 0.0615 0.07098 0.07529 2.09% Castro::do_new_sources() 10 0.0615 0.06675 0.07529 2.09% Castro::computeTemp() 63 0.06816 0.07048 0.07447 2.07% Castro::reset_internal_energy(MultiFab) 63 0.04858 0.05054 0.05324 1.48% Castro::reset_internal_energy(Fab) 1008 0.04825 0.05025 0.05295 1.47% Amr::writePlotFile() 2 0.05155 0.05169 0.05181 1.44% Castro::do_old_sources() 10 0.03981 0.04477 0.04616 1.28% FabArray::ParallelCopy_nowait() 41 0.03563 0.0413 0.04352 1.21% Castro::normalize_species() 62 0.04156 0.04221 0.04335 1.20% StateDataPhysBCFunct::() 41 0.03193 0.03573 0.03997 1.11% StateData::FillBoundary(geom) 41 0.03181 0.03562 0.03987 1.11% Castro::construct_new_source() 50 0.02993 0.03209 0.03568 0.99% Castro::construct_new_gravity_source() 10 0.02354 0.02586 0.0293 0.81% Gravity::interpolate_monopole_grav() 21 0.02804 0.02847 0.02889 0.80% Castro::post_init() 1 0.02615 0.02634 0.02648 0.73% VisMF::Write(FabArray) 2 0.01364 0.01414 0.01721 0.48% Castro::post_timestep() 10 0.01568 0.01612 0.01675 0.46% Castro::apply_source_to_state() 20 0.01203 0.01359 0.01439 0.40% FabArray::Saxpy() 20 0.01198 0.01355 0.01434 0.40% Castro::Castro() 1 0.01126 0.01163 0.01243 0.34% FabArray::setDomainBndry() 41 0.007866 0.01035 0.01175 0.33% Castro::check_for_nan() 20 0.01049 0.01102 0.01135 0.32% MultiFab::contains_nan() 20 0.01047 0.01099 0.01133 0.31% Castro::construct_old_source() 50 0.007369 0.01002 0.0106 0.29% Castro::construct_old_gravity_source() 10 0.007316 0.009946 0.01052 0.29% Castro::computeNewDt() 9 0.008721 0.008726 0.008733 0.24% Castro::initMFs() 1 0.00704 0.007447 0.008626 0.24% AmrLevel::AmrLevel(dm) 1 0.005778 0.005972 0.006532 0.18% StateData::define() 4 0.005757 0.005952 0.006511 0.18% Castro::enforce_min_density() 62 0.005896 0.006122 0.006458 0.18% Castro::swap_state_time_levels() 10 0.002174 0.004437 0.004779 0.13% Castro::finalize_advance() 10 0.00291 0.003331 0.003985 0.11% Castro::finalize_do_advance() 10 0.0005571 0.001651 0.002145 0.06% Castro::buildMetrics() 1 0.001768 0.001842 0.002014 0.06% Castro::post_regrid() 1 0.001583 0.00166 0.001707 0.05% Amr::InitAmr() 1 0.0002641 0.0003027 0.0004886 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.245e-05 0.0001984 0.0002396 0.01% DistributionMapping::LeastUsedCPUs() 1 7.409e-06 0.0001926 0.0002327 0.01% FabArrayBase::getCPC() 41 7.168e-05 8.11e-05 0.0001064 0.00% Castro::enforce_consistent_e() 1 8.321e-05 9.028e-05 0.0001051 0.00% Amr::writeSmallPlotFile() 1 3.683e-05 4.948e-05 7.074e-05 0.00% Castro::enforce_speed_limit() 62 2.734e-05 3.1e-05 3.898e-05 0.00% FabArrayBase::CPC::define() 2 1.955e-05 2.559e-05 3.398e-05 0.00% Gravity::swapTimeLevels() 10 1.01e-05 1.108e-05 1.217e-05 0.00% Castro::FluxRegCrseInit 10 5.542e-06 8.326e-06 1.185e-05 0.00% Castro::create_source_corrector() 10 8.308e-06 9.515e-06 1.17e-05 0.00% Gravity::set_mass_offset() 10 8.791e-06 9.983e-06 1.126e-05 0.00% Amr::initSubcycle() 1 8.784e-06 9.445e-06 1.031e-05 0.00% Castro::retry_advance_ctu() 10 4.612e-06 5.468e-06 6.853e-06 0.00% Castro::FluxRegFineAdd() 10 1.973e-06 2.466e-06 3.122e-06 0.00% DistributionMapping::Distribute() 1 1.031e-06 1.259e-06 2.147e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 36 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 15 KiB 15 KiB 17 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-45-g42acecf9c7f7) finalized