MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-45-g42acecf9c7f7) initialized Starting run at 18:10:28 UTC on 2023-02-25. Successfully read inputs file ... Castro git describe: 23.01-46-g035c47080 AMReX git describe: 23.02-45-g42acecf9c Microphysics git describe: 23.02-16-g3e0cd993 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015622106 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358657093 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347225959 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330356069 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328924901 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350515147 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33999014 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314141779 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313977574 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.367008003 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314871048 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.05217174 seconds Ending run at 18:10:32 UTC on 2023-02-25. Run time = 3.632668873 Run time without initialization = 3.425142696 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.632 ... 3.633 ... 3.633 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2965 2.3621 2.4003 66.07% Gravity::make_radial_gravity() 21 0.3134 0.3234 0.3385 9.32% Castro::do_advance_ctu() 10 0.06667 0.1074 0.1758 4.84% Castro::initData() 1 0.0382 0.08066 0.1364 3.76% Castro::estTimeStep() 21 0.03774 0.09449 0.1314 3.62% FabArray::ParallelCopy_finish() 41 0.03568 0.05412 0.08761 2.41% FabArray::setVal() 143 0.06311 0.07037 0.08266 2.28% amrex::Copy() 193 0.05913 0.0713 0.07927 2.18% Amr::writePlotFile() 2 0.04823 0.05095 0.0522 1.44% Castro::reset_internal_energy(Fab) 1008 0.04791 0.05 0.05161 1.42% Castro::normalize_species() 62 0.04115 0.04216 0.0428 1.18% FabArray::ParallelCopy_nowait() 41 0.03675 0.04107 0.04251 1.17% StateData::FillBoundary(geom) 41 0.03397 0.0362 0.04118 1.13% FillPatchIterator::Initialize 41 0.0279 0.03324 0.037 1.02% Castro::construct_new_gravity_source() 10 0.02323 0.02639 0.03102 0.85% Gravity::interpolate_monopole_grav() 21 0.02751 0.02853 0.02974 0.82% Castro::computeTemp() 63 0.0175 0.01967 0.02075 0.57% Castro::initialize_do_advance() 10 0.01201 0.01721 0.02052 0.56% VisMF::Write(FabArray) 2 0.0135 0.01443 0.01707 0.47% FabArray::Saxpy() 20 0.01247 0.01395 0.01478 0.41% Castro::initialize_advance() 10 0.004142 0.009987 0.0135 0.37% MultiFab::contains_nan() 20 0.01032 0.01101 0.01184 0.33% FabArray::setDomainBndry() 41 0.00785 0.01024 0.0116 0.32% Castro::construct_old_gravity_source() 10 0.007423 0.01014 0.01066 0.29% Castro::initMFs() 1 0.006849 0.007809 0.01059 0.29% StateData::define() 4 0.005688 0.006405 0.00821 0.23% Castro::enforce_min_density() 62 0.005742 0.006171 0.006907 0.19% main() 1 0.005788 0.006287 0.00654 0.18% Castro::construct_new_source() 50 0.005631 0.006136 0.006346 0.17% Castro::swap_state_time_levels() 10 0.003333 0.004407 0.004847 0.13% Amr::coarseTimeStep() 10 0.00175 0.002965 0.004189 0.12% Gravity::get_new_grav_vector() 11 0.002907 0.003528 0.003989 0.11% Gravity::get_old_grav_vector() 10 0.001817 0.002371 0.002813 0.08% Castro::finalize_do_advance() 10 0.0006472 0.001934 0.00247 0.07% Castro::buildMetrics() 1 0.001615 0.001817 0.002364 0.07% Castro::expand_state() 10 0.0006256 0.0009485 0.001175 0.03% Amr::timeStep() 10 0.000173 0.0002823 0.0007816 0.02% Amr::InitAmr() 1 0.0002808 0.0003619 0.0005027 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000276 0.0002939 0.0003225 0.01% DistributionMapping::LeastUsedCPUs() 1 8.938e-06 0.0001884 0.0002776 0.01% Castro::clean_state() 62 0.000153 0.0001815 0.0002094 0.01% StateDataPhysBCFunct::() 41 0.0001023 0.0001233 0.0001432 0.00% Castro::enforce_consistent_e() 1 7.685e-05 9.177e-05 0.0001193 0.00% Castro::construct_old_source() 50 4.984e-05 7.115e-05 0.0001024 0.00% Castro::finalize_advance() 10 7.973e-05 9.12e-05 9.748e-05 0.00% Amr::FinalizeInit() 1 4.046e-06 1.442e-05 8.287e-05 0.00% Castro::do_new_sources() 10 5.522e-05 6.427e-05 8.094e-05 0.00% FabArray::ParallelCopy() 41 6.7e-05 7.295e-05 7.953e-05 0.00% FabArrayBase::getCPC() 41 4.664e-05 5.549e-05 7.944e-05 0.00% Castro::Castro() 1 5.836e-05 6.997e-05 7.905e-05 0.00% FillPatchSingleLevel 41 6.349e-05 7.13e-05 7.86e-05 0.00% Amr::writeSmallPlotFile() 1 6.655e-05 7.334e-05 7.833e-05 0.00% Castro::do_old_sources() 10 5.289e-05 6.228e-05 6.854e-05 0.00% Castro::advance() 10 3.679e-05 4.486e-05 6.779e-05 0.00% Castro::apply_source_to_state() 20 4.166e-05 4.65e-05 5.258e-05 0.00% Castro::subcycle_advance_ctu() 10 3.749e-05 4.444e-05 5.05e-05 0.00% Castro::construct_old_gravity() 10 3.913e-05 4.238e-05 4.608e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.616e-05 2.867e-05 4.471e-05 0.00% Castro::construct_new_gravity() 10 3.48e-05 3.789e-05 4.463e-05 0.00% Castro::post_timestep() 10 1.275e-05 2.68e-05 4.152e-05 0.00% FabArrayBase::CPC::define() 2 2.022e-05 2.525e-05 4.101e-05 0.00% Amr::defBaseLevel() 1 1.807e-05 2.454e-05 3.4e-05 0.00% Castro::enforce_speed_limit() 62 2.419e-05 2.673e-05 3.021e-05 0.00% Castro::check_for_nan() 20 2.319e-05 2.454e-05 2.603e-05 0.00% Amr::initSubcycle() 1 8.952e-06 1.13e-05 1.769e-05 0.00% Gravity::swapTimeLevels() 10 7.161e-06 1.069e-05 1.474e-05 0.00% Gravity::set_mass_offset() 10 8.579e-06 1.023e-05 1.256e-05 0.00% Castro::create_source_corrector() 10 8.104e-06 9.548e-06 1.079e-05 0.00% Castro::computeNewDt() 9 8.45e-06 9.363e-06 1.015e-05 0.00% Castro::FluxRegCrseInit 10 6.398e-06 8.509e-06 9.73e-06 0.00% Castro::retry_advance_ctu() 10 4.598e-06 5.265e-06 6.058e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.599e-06 4.285e-06 5.574e-06 0.00% Amr::InitializeInit() 1 1.779e-06 2.502e-06 4.553e-06 0.00% Castro::post_init() 1 3.152e-06 3.646e-06 4.537e-06 0.00% Castro::post_regrid() 1 2.162e-06 3.131e-06 4.382e-06 0.00% Castro::computeInitialDt() 2 3.518e-06 3.762e-06 4.153e-06 0.00% Amr::init() 1 1.57e-06 2.074e-06 2.65e-06 0.00% Castro::FluxRegFineAdd() 10 1.857e-06 2.327e-06 2.632e-06 0.00% Amr::initialInit() 1 1.191e-06 1.476e-06 1.692e-06 0.00% DistributionMapping::Distribute() 1 9.28e-07 1.128e-06 1.481e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.632 3.632 3.633 100.00% Amr::coarseTimeStep() 10 3.367 3.367 3.367 92.67% Amr::timeStep() 10 3.353 3.354 3.355 92.36% Castro::advance() 10 3.337 3.338 3.339 91.91% Castro::subcycle_advance_ctu() 10 3.252 3.262 3.271 90.04% Castro::do_advance_ctu() 10 3.252 3.262 3.271 90.04% Castro::construct_ctu_hydro_source() 10 2.296 2.362 2.4 66.07% Gravity::make_radial_gravity() 21 0.329 0.3395 0.3508 9.66% Gravity::get_new_grav_vector() 11 0.2205 0.2238 0.2255 6.21% Castro::construct_old_gravity() 10 0.1911 0.2005 0.2084 5.74% Gravity::get_old_grav_vector() 10 0.19 0.1998 0.2077 5.72% Amr::init() 1 0.2068 0.2069 0.207 5.70% Castro::construct_new_gravity() 10 0.1968 0.1994 0.2014 5.54% FillPatchIterator::Initialize 41 0.1551 0.1752 0.1953 5.38% Amr::initialInit() 1 0.1911 0.1912 0.1914 5.27% Castro::initialize_do_advance() 10 0.1516 0.1672 0.1773 4.88% Amr::InitializeInit() 1 0.05904 0.1032 0.1633 4.49% Amr::defBaseLevel() 1 0.05904 0.1031 0.1633 4.49% FillPatchSingleLevel 41 0.1169 0.1317 0.1596 4.39% Castro::initData() 1 0.04205 0.08454 0.1403 3.86% Amr::FinalizeInit() 1 0.02777 0.08807 0.1321 3.64% Castro::estTimeStep() 21 0.03774 0.09449 0.1314 3.62% Castro::expand_state() 10 0.102 0.12 0.1295 3.57% FabArray::ParallelCopy() 41 0.07833 0.09534 0.1246 3.43% Castro::clean_state() 62 0.1129 0.1175 0.1216 3.35% Castro::computeInitialDt() 2 0.001984 0.06229 0.1065 2.93% FabArray::ParallelCopy_finish() 41 0.03568 0.05412 0.08761 2.41% FabArray::setVal() 143 0.06311 0.07037 0.08266 2.28% Castro::initialize_advance() 10 0.06194 0.07238 0.08211 2.26% amrex::Copy() 193 0.05913 0.0713 0.07927 2.18% Castro::do_new_sources() 10 0.06028 0.06703 0.07831 2.16% Castro::computeTemp() 63 0.06571 0.06996 0.07267 2.00% Amr::writePlotFile() 2 0.06783 0.06796 0.06815 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04821 0.0503 0.05191 1.43% Castro::reset_internal_energy(Fab) 1008 0.04791 0.05 0.05161 1.42% Castro::do_old_sources() 10 0.04008 0.04497 0.04616 1.27% Castro::normalize_species() 62 0.04115 0.04216 0.0428 1.18% FabArray::ParallelCopy_nowait() 41 0.03687 0.04115 0.04258 1.17% StateDataPhysBCFunct::() 41 0.03409 0.03632 0.04131 1.14% StateData::FillBoundary(geom) 41 0.03397 0.0362 0.04118 1.13% Castro::construct_new_source() 50 0.02937 0.03253 0.03734 1.03% Castro::construct_new_gravity_source() 10 0.02323 0.02639 0.03102 0.85% Gravity::interpolate_monopole_grav() 21 0.02751 0.02853 0.02974 0.82% Castro::post_init() 1 0.02511 0.02528 0.02544 0.70% VisMF::Write(FabArray) 2 0.0135 0.01443 0.01707 0.47% Castro::post_timestep() 10 0.01526 0.01598 0.01644 0.45% Castro::apply_source_to_state() 20 0.01252 0.014 0.01483 0.41% FabArray::Saxpy() 20 0.01247 0.01395 0.01478 0.41% Castro::Castro() 1 0.01095 0.01196 0.01474 0.41% Castro::check_for_nan() 20 0.01035 0.01104 0.01186 0.33% MultiFab::contains_nan() 20 0.01032 0.01101 0.01184 0.33% FabArray::setDomainBndry() 41 0.00785 0.01024 0.0116 0.32% Castro::construct_old_source() 50 0.007473 0.01021 0.01073 0.30% Castro::construct_old_gravity_source() 10 0.007423 0.01014 0.01066 0.29% Castro::initMFs() 1 0.006849 0.007809 0.01059 0.29% Castro::computeNewDt() 9 0.008415 0.008423 0.008428 0.23% AmrLevel::AmrLevel(dm) 1 0.005714 0.006433 0.008245 0.23% StateData::define() 4 0.005688 0.006405 0.00821 0.23% Castro::enforce_min_density() 62 0.005742 0.006171 0.006907 0.19% Castro::swap_state_time_levels() 10 0.003333 0.004407 0.004847 0.13% Castro::finalize_advance() 10 0.002938 0.00369 0.004558 0.13% Castro::buildMetrics() 1 0.001734 0.00196 0.002566 0.07% Castro::finalize_do_advance() 10 0.0006472 0.001934 0.00247 0.07% Castro::post_regrid() 1 0.001434 0.001577 0.001639 0.05% Amr::InitAmr() 1 0.00029 0.0003732 0.0005204 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.417e-05 0.0001938 0.0002844 0.01% DistributionMapping::LeastUsedCPUs() 1 8.938e-06 0.0001884 0.0002776 0.01% FabArrayBase::getCPC() 41 7.074e-05 8.073e-05 0.0001204 0.00% Castro::enforce_consistent_e() 1 7.685e-05 9.177e-05 0.0001193 0.00% Amr::writeSmallPlotFile() 1 6.655e-05 7.334e-05 7.833e-05 0.00% FabArrayBase::CPC::define() 2 2.022e-05 2.525e-05 4.101e-05 0.00% Castro::enforce_speed_limit() 62 2.419e-05 2.673e-05 3.021e-05 0.00% Amr::initSubcycle() 1 8.952e-06 1.13e-05 1.769e-05 0.00% Gravity::swapTimeLevels() 10 7.161e-06 1.069e-05 1.474e-05 0.00% Gravity::set_mass_offset() 10 8.579e-06 1.023e-05 1.256e-05 0.00% Castro::create_source_corrector() 10 8.104e-06 9.548e-06 1.079e-05 0.00% Castro::FluxRegCrseInit 10 6.398e-06 8.509e-06 9.73e-06 0.00% Castro::retry_advance_ctu() 10 4.598e-06 5.265e-06 6.058e-06 0.00% Castro::FluxRegFineAdd() 10 1.857e-06 2.327e-06 2.632e-06 0.00% DistributionMapping::Distribute() 1 9.28e-07 1.128e-06 1.481e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 45 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 14 KiB 16 KiB 20 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-45-g42acecf9c7f7) finalized