MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.02-50-g32a65ffa8aba) initialized Starting run at 06:41:06 UTC on 2023-02-28. Successfully read inputs file ... Castro git describe: 23.01-46-g0ea215c63 AMReX git describe: 23.02-50-g32a65ffa8 Microphysics git describe: 23.02-16-g3e0cd993 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016102756 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358001076 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351191596 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.356481536 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330281133 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350279247 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337536315 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312964648 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314168613 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313564123 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31367428 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010768258 seconds Ending run at 06:41:09 UTC on 2023-02-28. Run time = 3.537852595 Run time without initialization = 3.356310159 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.536 ... 3.537 ... 3.538 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2598 2.3506 2.3952 67.70% Gravity::make_radial_gravity() 21 0.3235 0.3338 0.354 10.01% Castro::do_advance_ctu() 10 0.03298 0.07905 0.1732 4.90% Castro::estTimeStep() 21 0.02615 0.06307 0.1135 3.21% Castro::initData() 1 0.03858 0.08087 0.1135 3.21% FabArray::setVal() 143 0.06277 0.0717 0.08321 2.35% amrex::Copy() 193 0.06115 0.0743 0.08123 2.30% FabArray::ParallelCopy_finish() 41 0.03364 0.05096 0.0808 2.28% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05014 0.05193 1.47% FabArray::ParallelCopy_nowait() 41 0.03589 0.04205 0.04412 1.25% Castro::normalize_species() 62 0.04099 0.04169 0.04281 1.21% StateData::FillBoundary(geom) 41 0.03264 0.03725 0.04038 1.14% FillPatchIterator::Initialize 41 0.02806 0.03436 0.0367 1.04% Castro::construct_new_gravity_source() 10 0.024 0.02696 0.03092 0.87% Gravity::interpolate_monopole_grav() 21 0.02778 0.02816 0.0289 0.82% Castro::initialize_do_advance() 10 0.01167 0.01787 0.02098 0.59% Castro::computeTemp() 63 0.0188 0.01994 0.02062 0.58% VisMF::Write(FabArray) 2 0.01361 0.01474 0.01756 0.50% FabArray::Saxpy() 20 0.012 0.0137 0.01457 0.41% Castro::initialize_advance() 10 0.008506 0.01111 0.01427 0.40% FabArray::setDomainBndry() 41 0.008194 0.01087 0.01236 0.35% MultiFab::contains_nan() 20 0.01042 0.01106 0.01182 0.33% Castro::construct_old_gravity_source() 10 0.007301 0.01032 0.01125 0.32% Amr::writePlotFile() 2 0.006681 0.009834 0.01073 0.30% Castro::initMFs() 1 0.006804 0.007782 0.01069 0.30% StateData::define() 4 0.005663 0.006307 0.008221 0.23% main() 1 0.004847 0.005836 0.006604 0.19% Castro::construct_new_source() 50 0.005722 0.00621 0.006411 0.18% Castro::enforce_min_density() 62 0.005717 0.00598 0.006356 0.18% Gravity::get_new_grav_vector() 11 0.002952 0.004167 0.005808 0.16% Castro::swap_state_time_levels() 10 0.003346 0.004376 0.004767 0.13% Amr::coarseTimeStep() 10 0.001635 0.002758 0.003565 0.10% Gravity::get_old_grav_vector() 10 0.001834 0.002532 0.002894 0.08% Castro::buildMetrics() 1 0.001625 0.001802 0.002319 0.07% Castro::finalize_do_advance() 10 0.000562 0.001643 0.002051 0.06% Castro::expand_state() 10 0.0005969 0.0007896 0.001039 0.03% Amr::InitAmr() 1 0.0002802 0.0003576 0.0005061 0.01% Amr::timeStep() 10 0.0001822 0.0002432 0.0004534 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002853 0.0003146 0.0004399 0.01% DistributionMapping::LeastUsedCPUs() 1 5.652e-06 0.000178 0.0002712 0.01% Castro::clean_state() 62 0.000156 0.0001716 0.0001909 0.01% Castro::enforce_consistent_e() 1 8.389e-05 9.648e-05 0.0001246 0.00% Castro::finalize_advance() 10 8.319e-05 9.486e-05 0.0001151 0.00% StateDataPhysBCFunct::() 41 8.093e-05 9.339e-05 0.0001146 0.00% FabArray::ParallelCopy() 41 7.544e-05 8.027e-05 8.643e-05 0.00% Castro::Castro() 1 5.914e-05 6.864e-05 8.526e-05 0.00% FillPatchSingleLevel 41 7.035e-05 7.675e-05 8.341e-05 0.00% Castro::advance() 10 3.585e-05 4.546e-05 8.233e-05 0.00% Castro::do_old_sources() 10 5.4e-05 6.812e-05 8.117e-05 0.00% FabArrayBase::getCPC() 41 4.674e-05 5.963e-05 8.066e-05 0.00% Castro::construct_old_source() 50 4.997e-05 6.685e-05 7.731e-05 0.00% Amr::writeSmallPlotFile() 1 3.135e-05 6.601e-05 7.569e-05 0.00% Castro::do_new_sources() 10 5.19e-05 6.302e-05 7.107e-05 0.00% Amr::FinalizeInit() 1 3.991e-06 1.222e-05 6.581e-05 0.00% Castro::subcycle_advance_ctu() 10 4.018e-05 4.679e-05 5.568e-05 0.00% Castro::apply_source_to_state() 20 4.338e-05 4.759e-05 5.169e-05 0.00% Amr::defBaseLevel() 1 2.579e-05 4.208e-05 5.159e-05 0.00% Castro::construct_old_gravity() 10 3.371e-05 4.118e-05 4.686e-05 0.00% Castro::construct_new_gravity() 10 3.36e-05 3.865e-05 4.312e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.996e-05 3.602e-05 0.00% Castro::post_timestep() 10 1.726e-05 2.737e-05 3.536e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.864e-05 2.543e-05 3.214e-05 0.00% Castro::check_for_nan() 20 2.106e-05 2.391e-05 2.959e-05 0.00% FabArrayBase::CPC::define() 2 2.015e-05 2.365e-05 2.799e-05 0.00% Amr::initSubcycle() 1 8.843e-06 1.105e-05 1.633e-05 0.00% Gravity::swapTimeLevels() 10 7.873e-06 1.114e-05 1.314e-05 0.00% Gravity::set_mass_offset() 10 8.498e-06 1.041e-05 1.232e-05 0.00% Castro::create_source_corrector() 10 8.349e-06 9.959e-06 1.1e-05 0.00% Castro::FluxRegCrseInit 10 7.294e-06 8.799e-06 1.014e-05 0.00% Castro::computeNewDt() 9 7.69e-06 8.889e-06 9.631e-06 0.00% Amr::init() 1 1.558e-06 2.581e-06 7.402e-06 0.00% Castro::retry_advance_ctu() 10 5.193e-06 5.641e-06 6.317e-06 0.00% Castro::post_init() 1 2.7e-06 3.678e-06 5.482e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.471e-06 4.37e-06 5.455e-06 0.00% Amr::InitializeInit() 1 1.958e-06 2.611e-06 4.925e-06 0.00% Castro::computeInitialDt() 2 3.23e-06 3.783e-06 4.844e-06 0.00% Castro::post_regrid() 1 1.609e-06 2.77e-06 3.572e-06 0.00% Castro::FluxRegFineAdd() 10 1.825e-06 2.312e-06 2.764e-06 0.00% Amr::initialInit() 1 1.165e-06 1.381e-06 1.806e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.073e-06 1.389e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.536 3.537 3.538 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 94.38% Amr::timeStep() 10 3.325 3.326 3.327 94.05% Castro::advance() 10 3.31 3.31 3.311 93.57% Castro::subcycle_advance_ctu() 10 3.222 3.232 3.237 91.50% Castro::do_advance_ctu() 10 3.222 3.232 3.237 91.50% Castro::construct_ctu_hydro_source() 10 2.26 2.351 2.395 67.70% Gravity::make_radial_gravity() 21 0.3405 0.3513 0.3679 10.40% Gravity::get_new_grav_vector() 11 0.23 0.2323 0.2334 6.60% Castro::construct_old_gravity() 10 0.1966 0.2035 0.2156 6.09% Gravity::get_old_grav_vector() 10 0.1959 0.2027 0.215 6.08% Castro::construct_new_gravity() 10 0.2042 0.206 0.2068 5.84% FillPatchIterator::Initialize 41 0.1614 0.1758 0.1881 5.32% Amr::init() 1 0.1808 0.181 0.1811 5.12% Castro::initialize_do_advance() 10 0.1562 0.1687 0.1798 5.08% Amr::initialInit() 1 0.1642 0.1645 0.1647 4.66% FillPatchSingleLevel 41 0.1142 0.1306 0.1497 4.23% Amr::InitializeInit() 1 0.05959 0.1034 0.1348 3.81% Amr::defBaseLevel() 1 0.05959 0.1034 0.1348 3.81% Castro::expand_state() 10 0.1081 0.1207 0.1315 3.72% Castro::clean_state() 62 0.1147 0.1173 0.1205 3.41% Castro::initData() 1 0.0426 0.08488 0.1177 3.33% FabArray::ParallelCopy() 41 0.07705 0.09318 0.1169 3.30% Castro::estTimeStep() 21 0.02615 0.06307 0.1135 3.21% Amr::FinalizeInit() 1 0.02984 0.06104 0.1048 2.96% Castro::initialize_advance() 10 0.06924 0.07451 0.08383 2.37% FabArray::setVal() 143 0.06277 0.0717 0.08321 2.35% amrex::Copy() 193 0.06115 0.0743 0.08123 2.30% FabArray::ParallelCopy_finish() 41 0.03364 0.05096 0.0808 2.28% Castro::computeInitialDt() 2 0.002171 0.03344 0.07728 2.18% Castro::do_new_sources() 10 0.06095 0.06722 0.07638 2.16% Castro::computeTemp() 63 0.0686 0.0704 0.07279 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04874 0.05046 0.05237 1.48% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05014 0.05193 1.47% Castro::do_old_sources() 10 0.03945 0.04512 0.04668 1.32% FabArray::ParallelCopy_nowait() 41 0.03599 0.04214 0.04419 1.25% Castro::normalize_species() 62 0.04099 0.04169 0.04281 1.21% StateDataPhysBCFunct::() 41 0.03275 0.03734 0.04049 1.14% StateData::FillBoundary(geom) 41 0.03264 0.03725 0.04038 1.14% Castro::construct_new_source() 50 0.03021 0.03317 0.03727 1.05% Castro::construct_new_gravity_source() 10 0.024 0.02696 0.03092 0.87% Gravity::interpolate_monopole_grav() 21 0.02778 0.02816 0.0289 0.82% Amr::writePlotFile() 2 0.02708 0.02736 0.02763 0.78% Castro::post_init() 1 0.02695 0.02718 0.02738 0.77% VisMF::Write(FabArray) 2 0.01361 0.01474 0.01756 0.50% Castro::post_timestep() 10 0.01551 0.01598 0.01651 0.47% Castro::Castro() 1 0.01105 0.012 0.01484 0.42% Castro::apply_source_to_state() 20 0.01205 0.01375 0.01462 0.41% FabArray::Saxpy() 20 0.012 0.0137 0.01457 0.41% FabArray::setDomainBndry() 41 0.008194 0.01087 0.01236 0.35% Castro::check_for_nan() 20 0.01045 0.01108 0.01185 0.33% MultiFab::contains_nan() 20 0.01042 0.01106 0.01182 0.33% Castro::construct_old_source() 50 0.007351 0.01038 0.01132 0.32% Castro::construct_old_gravity_source() 10 0.007301 0.01032 0.01125 0.32% Castro::initMFs() 1 0.006804 0.007782 0.01069 0.30% Castro::computeNewDt() 9 0.008809 0.008815 0.008822 0.25% AmrLevel::AmrLevel(dm) 1 0.005682 0.006332 0.008248 0.23% StateData::define() 4 0.005663 0.006307 0.008221 0.23% Castro::enforce_min_density() 62 0.005717 0.00598 0.006356 0.18% Castro::swap_state_time_levels() 10 0.003346 0.004376 0.004767 0.13% Castro::finalize_advance() 10 0.003103 0.003719 0.00436 0.12% Castro::buildMetrics() 1 0.001762 0.001964 0.002548 0.07% Castro::finalize_do_advance() 10 0.000562 0.001643 0.002051 0.06% Castro::post_regrid() 1 0.001542 0.001626 0.001655 0.05% Amr::InitAmr() 1 0.0002901 0.0003686 0.0005224 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.086e-05 0.0001835 0.0002777 0.01% DistributionMapping::LeastUsedCPUs() 1 5.652e-06 0.000178 0.0002712 0.01% Castro::enforce_consistent_e() 1 8.389e-05 9.648e-05 0.0001246 0.00% FabArrayBase::getCPC() 41 6.788e-05 8.328e-05 0.0001081 0.00% Amr::writeSmallPlotFile() 1 3.135e-05 6.601e-05 7.569e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.996e-05 3.602e-05 0.00% FabArrayBase::CPC::define() 2 2.015e-05 2.365e-05 2.799e-05 0.00% Amr::initSubcycle() 1 8.843e-06 1.105e-05 1.633e-05 0.00% Gravity::swapTimeLevels() 10 7.873e-06 1.114e-05 1.314e-05 0.00% Gravity::set_mass_offset() 10 8.498e-06 1.041e-05 1.232e-05 0.00% Castro::create_source_corrector() 10 8.349e-06 9.959e-06 1.1e-05 0.00% Castro::FluxRegCrseInit 10 7.294e-06 8.799e-06 1.014e-05 0.00% Castro::retry_advance_ctu() 10 5.193e-06 5.641e-06 6.317e-06 0.00% Castro::FluxRegFineAdd() 10 1.825e-06 2.312e-06 2.764e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.073e-06 1.389e-06 0.00% ------------------------------------------------------------------------------------------- Cpu (amrex_mempool) Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 51 B 8192 KiB 8192 KiB 8192 KiB amrex_mempool_init() 8 8 15 KiB 17 KiB 22 KiB 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (23.02-50-g32a65ffa8aba) finalized