MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-1-gb96f6e5bd13d) initialized Starting run at 01:33:56 UTC on 2023-03-02. Successfully read inputs file ... Castro git describe: 23.03-34-gd4e492a5d AMReX git describe: 23.03-1-gb96f6e5bd Microphysics git describe: 23.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015998506 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357094598 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342151439 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335895084 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337004532 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356063998 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343842202 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318031922 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316717573 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317619508 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317523564 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010157811 seconds Ending run at 01:34:00 UTC on 2023-03-02. Run time = 3.546937122 Run time without initialization = 3.359468328 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.546 ... 3.547 ... 3.547 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2721 2.3619 2.4181 68.17% Gravity::make_radial_gravity() 21 0.3157 0.3243 0.3382 9.54% Castro::do_advance_ctu() 10 0.007867 0.06471 0.1573 4.43% Castro::estTimeStep() 21 0.02942 0.0708 0.1231 3.47% Castro::initData() 1 0.03849 0.08148 0.1208 3.41% FabArray::setVal() 143 0.06607 0.0757 0.08725 2.46% amrex::Copy() 193 0.06916 0.07495 0.08409 2.37% FabArray::ParallelCopy_finish() 41 0.03636 0.05321 0.06506 1.83% Castro::reset_internal_energy(Fab) 1008 0.04937 0.05003 0.05076 1.43% Castro::normalize_species() 62 0.04191 0.04268 0.04492 1.27% FabArray::ParallelCopy_nowait() 41 0.03965 0.04297 0.04448 1.25% StateData::FillBoundary(geom) 41 0.03332 0.03664 0.03946 1.11% FillPatchIterator::Initialize 41 0.02888 0.03588 0.03897 1.10% Castro::construct_new_gravity_source() 10 0.02395 0.02757 0.03216 0.91% Gravity::interpolate_monopole_grav() 21 0.02738 0.02867 0.03002 0.85% Castro::initialize_do_advance() 10 0.01202 0.01809 0.02206 0.62% Castro::computeTemp() 63 0.01917 0.0199 0.02043 0.58% VisMF::Write(FabArray) 2 0.01302 0.01376 0.01655 0.47% FabArray::Saxpy() 20 0.01459 0.01525 0.01634 0.46% Castro::initialize_advance() 10 0.009614 0.01196 0.01455 0.41% FabArray::setDomainBndry() 41 0.007874 0.01097 0.01217 0.34% MultiFab::contains_nan() 20 0.01078 0.01145 0.01191 0.34% Castro::construct_old_gravity_source() 10 0.008388 0.01061 0.01114 0.31% Castro::initMFs() 1 0.006827 0.007792 0.01065 0.30% Amr::writePlotFile() 2 0.006866 0.00941 0.01019 0.29% StateData::define() 4 0.005719 0.00635 0.008205 0.23% Castro::enforce_min_density() 62 0.005905 0.006156 0.006555 0.18% main() 1 0.00513 0.006097 0.006547 0.18% Castro::construct_new_source() 50 0.006101 0.006342 0.006503 0.18% Castro::swap_state_time_levels() 10 0.003522 0.004764 0.005049 0.14% Amr::coarseTimeStep() 10 0.001728 0.002971 0.004244 0.12% Gravity::get_new_grav_vector() 11 0.003075 0.003803 0.004119 0.12% Gravity::get_old_grav_vector() 10 0.001867 0.002461 0.00279 0.08% Castro::buildMetrics() 1 0.001602 0.001795 0.002365 0.07% Castro::finalize_do_advance() 10 0.0006227 0.001658 0.002042 0.06% Castro::expand_state() 10 0.0006819 0.0008886 0.0009766 0.03% Amr::InitAmr() 1 0.0002742 0.0003525 0.0005139 0.01% Amr::timeStep() 10 0.0001816 0.0002402 0.0003905 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002841 0.0002978 0.000335 0.01% DistributionMapping::LeastUsedCPUs() 1 8.037e-06 0.0001958 0.0002862 0.01% Castro::clean_state() 62 0.0001484 0.0001638 0.000193 0.01% StateDataPhysBCFunct::() 41 9.754e-05 0.0001229 0.0001528 0.00% Castro::finalize_advance() 10 8.543e-05 9.436e-05 0.0001098 0.00% Amr::writeSmallPlotFile() 1 4.201e-05 9.317e-05 0.0001067 0.00% Castro::enforce_consistent_e() 1 8.224e-05 8.71e-05 9.785e-05 0.00% Amr::FinalizeInit() 1 4.392e-06 1.551e-05 9.019e-05 0.00% FabArray::ParallelCopy() 41 6.946e-05 7.561e-05 8.366e-05 0.00% Castro::Castro() 1 5.684e-05 6.618e-05 8.196e-05 0.00% Castro::construct_old_source() 50 6.411e-05 7.163e-05 8.162e-05 0.00% FillPatchSingleLevel 41 6.46e-05 6.969e-05 7.888e-05 0.00% Castro::construct_new_gravity() 10 3.53e-05 4.741e-05 7.636e-05 0.00% Castro::apply_source_to_state() 20 4.146e-05 5.123e-05 7.469e-05 0.00% FabArrayBase::getCPC() 41 4.309e-05 5.597e-05 7.467e-05 0.00% Castro::do_old_sources() 10 5.672e-05 6.295e-05 7.404e-05 0.00% Castro::do_new_sources() 10 5.316e-05 6.28e-05 7.347e-05 0.00% Castro::subcycle_advance_ctu() 10 4.631e-05 5.406e-05 6.581e-05 0.00% Castro::advance() 10 3.926e-05 4.605e-05 6.166e-05 0.00% Castro::construct_old_gravity() 10 3.964e-05 4.241e-05 5.01e-05 0.00% Castro::post_timestep() 10 1.295e-05 2.97e-05 3.71e-05 0.00% Amr::defBaseLevel() 1 1.758e-05 2.225e-05 3.315e-05 0.00% FabArrayBase::CPC::define() 2 2.174e-05 2.608e-05 3.256e-05 0.00% Castro::enforce_speed_limit() 62 2.36e-05 2.719e-05 3.203e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.123e-05 1.986e-05 3.03e-05 0.00% Castro::check_for_nan() 20 2.177e-05 2.444e-05 2.859e-05 0.00% Gravity::swapTimeLevels() 10 1.071e-05 1.344e-05 1.767e-05 0.00% Amr::initSubcycle() 1 8.893e-06 1.088e-05 1.588e-05 0.00% Castro::create_source_corrector() 10 7.851e-06 1.029e-05 1.336e-05 0.00% Gravity::set_mass_offset() 10 9.767e-06 1.085e-05 1.24e-05 0.00% Castro::FluxRegCrseInit 10 6.697e-06 9.289e-06 1.158e-05 0.00% Castro::computeNewDt() 9 8.605e-06 9.898e-06 1.093e-05 0.00% Castro::retry_advance_ctu() 10 5.114e-06 6.169e-06 7.741e-06 0.00% Amr::InitializeInit() 1 1.812e-06 2.552e-06 5.363e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.568e-06 4.195e-06 5.345e-06 0.00% Castro::post_regrid() 1 1.788e-06 3.221e-06 5.214e-06 0.00% Castro::post_init() 1 2.651e-06 3.78e-06 4.792e-06 0.00% Castro::computeInitialDt() 2 3.233e-06 4.037e-06 4.475e-06 0.00% Amr::initialInit() 1 1.126e-06 1.478e-06 2.759e-06 0.00% Castro::FluxRegFineAdd() 10 1.843e-06 2.134e-06 2.659e-06 0.00% Amr::init() 1 1.522e-06 1.931e-06 2.613e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.11e-06 1.42e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.546 3.547 3.547 100.00% Amr::coarseTimeStep() 10 3.343 3.343 3.343 94.24% Amr::timeStep() 10 3.329 3.33 3.331 93.91% Castro::advance() 10 3.312 3.313 3.314 93.44% Castro::subcycle_advance_ctu() 10 3.224 3.231 3.238 91.29% Castro::do_advance_ctu() 10 3.224 3.231 3.238 91.28% Castro::construct_ctu_hydro_source() 10 2.272 2.362 2.418 68.17% Gravity::make_radial_gravity() 21 0.3335 0.3416 0.354 9.98% Gravity::get_new_grav_vector() 11 0.2248 0.2259 0.2269 6.40% Castro::construct_old_gravity() 10 0.196 0.2031 0.2138 6.03% Gravity::get_old_grav_vector() 10 0.1952 0.2022 0.2126 5.99% Castro::construct_new_gravity() 10 0.1997 0.2005 0.2015 5.68% FillPatchIterator::Initialize 41 0.1657 0.18 0.1943 5.48% Amr::init() 1 0.1868 0.187 0.1871 5.27% Castro::initialize_do_advance() 10 0.1527 0.171 0.1852 5.22% Amr::initialInit() 1 0.1707 0.171 0.1712 4.83% FillPatchSingleLevel 41 0.119 0.1332 0.1443 4.07% Amr::InitializeInit() 1 0.0596 0.104 0.1421 4.01% Amr::defBaseLevel() 1 0.0596 0.104 0.1421 4.01% Castro::expand_state() 10 0.1102 0.1226 0.1372 3.87% Castro::initData() 1 0.04246 0.08544 0.125 3.52% Castro::estTimeStep() 21 0.02942 0.0708 0.1231 3.47% Castro::clean_state() 62 0.1171 0.1183 0.1215 3.42% Amr::FinalizeInit() 1 0.02904 0.06701 0.1116 3.15% FabArray::ParallelCopy() 41 0.08073 0.09634 0.1059 2.99% FabArray::setVal() 143 0.06607 0.0757 0.08725 2.46% Castro::initialize_advance() 10 0.07144 0.07844 0.08616 2.43% Castro::computeInitialDt() 2 0.002069 0.04006 0.08456 2.38% amrex::Copy() 193 0.06916 0.07495 0.08409 2.37% Castro::do_new_sources() 10 0.06179 0.07041 0.08098 2.28% Castro::computeTemp() 63 0.0694 0.07022 0.07142 2.01% FabArray::ParallelCopy_finish() 41 0.03636 0.05321 0.06506 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04965 0.05032 0.05106 1.44% Castro::reset_internal_energy(Fab) 1008 0.04937 0.05003 0.05076 1.43% Castro::do_old_sources() 10 0.04388 0.04651 0.04725 1.33% Castro::normalize_species() 62 0.04191 0.04268 0.04492 1.27% FabArray::ParallelCopy_nowait() 41 0.03975 0.04305 0.04455 1.26% StateDataPhysBCFunct::() 41 0.03345 0.03677 0.03958 1.12% StateData::FillBoundary(geom) 41 0.03332 0.03664 0.03946 1.11% Castro::construct_new_source() 50 0.03012 0.03391 0.03863 1.09% Castro::construct_new_gravity_source() 10 0.02395 0.02757 0.03216 0.91% Gravity::interpolate_monopole_grav() 21 0.02738 0.02867 0.03002 0.85% Castro::post_init() 1 0.02607 0.02638 0.0265 0.75% Amr::writePlotFile() 2 0.02603 0.02616 0.0264 0.74% Castro::post_timestep() 10 0.01596 0.01625 0.01668 0.47% VisMF::Write(FabArray) 2 0.01302 0.01376 0.01655 0.47% Castro::apply_source_to_state() 20 0.01463 0.0153 0.01639 0.46% FabArray::Saxpy() 20 0.01459 0.01525 0.01634 0.46% Castro::Castro() 1 0.01101 0.01199 0.01482 0.42% FabArray::setDomainBndry() 41 0.007874 0.01097 0.01217 0.34% Castro::check_for_nan() 20 0.01081 0.01148 0.01194 0.34% MultiFab::contains_nan() 20 0.01078 0.01145 0.01191 0.34% Castro::construct_old_source() 50 0.008452 0.01068 0.01121 0.32% Castro::construct_old_gravity_source() 10 0.008388 0.01061 0.01114 0.31% Castro::initMFs() 1 0.006827 0.007792 0.01065 0.30% Castro::computeNewDt() 9 0.008948 0.008977 0.008997 0.25% AmrLevel::AmrLevel(dm) 1 0.005735 0.006369 0.008234 0.23% StateData::define() 4 0.005719 0.00635 0.008205 0.23% Castro::enforce_min_density() 62 0.005905 0.006156 0.006555 0.18% Castro::swap_state_time_levels() 10 0.003522 0.004764 0.005049 0.14% Castro::finalize_advance() 10 0.002923 0.003698 0.004586 0.13% Castro::buildMetrics() 1 0.00173 0.001946 0.002576 0.07% Castro::finalize_do_advance() 10 0.0006227 0.001658 0.002042 0.06% Castro::post_regrid() 1 0.00158 0.001644 0.001706 0.05% Amr::InitAmr() 1 0.0002835 0.0003634 0.0005295 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.335e-05 0.0002011 0.0002928 0.01% DistributionMapping::LeastUsedCPUs() 1 8.037e-06 0.0001958 0.0002862 0.01% Amr::writeSmallPlotFile() 1 4.201e-05 9.317e-05 0.0001067 0.00% Castro::enforce_consistent_e() 1 8.224e-05 8.71e-05 9.785e-05 0.00% FabArrayBase::getCPC() 41 7.009e-05 8.205e-05 9.641e-05 0.00% FabArrayBase::CPC::define() 2 2.174e-05 2.608e-05 3.256e-05 0.00% Castro::enforce_speed_limit() 62 2.36e-05 2.719e-05 3.203e-05 0.00% Gravity::swapTimeLevels() 10 1.071e-05 1.344e-05 1.767e-05 0.00% Amr::initSubcycle() 1 8.893e-06 1.088e-05 1.588e-05 0.00% Castro::create_source_corrector() 10 7.851e-06 1.029e-05 1.336e-05 0.00% Gravity::set_mass_offset() 10 9.767e-06 1.085e-05 1.24e-05 0.00% Castro::FluxRegCrseInit 10 6.697e-06 9.289e-06 1.158e-05 0.00% Castro::retry_advance_ctu() 10 5.114e-06 6.169e-06 7.741e-06 0.00% Castro::FluxRegFineAdd() 10 1.843e-06 2.134e-06 2.659e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.11e-06 1.42e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-1-gb96f6e5bd13d) finalized