MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-1-gb96f6e5bd13d) initialized Starting run at 06:42:14 UTC on 2023-03-03. Successfully read inputs file ... Castro git describe: 23.03-1-g11cc0c2de AMReX git describe: 23.03-1-gb96f6e5bd Microphysics git describe: 23.03-2-g99d11bec reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016412279 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362595411 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344529828 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.359882915 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.3338584 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360478314 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.329058502 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310294437 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30955942 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310615921 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311460513 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010825676 seconds Ending run at 06:42:17 UTC on 2023-03-03. Run time = 3.535540196 Run time without initialization = 3.350129308 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.535 ... 3.535 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3124 2.3554 2.3844 67.44% Gravity::make_radial_gravity() 21 0.3335 0.3455 0.3576 10.11% Castro::initData() 1 0.04027 0.07806 0.1145 3.24% Castro::do_advance_ctu() 10 0.03459 0.06684 0.1102 3.12% Castro::estTimeStep() 21 0.0243 0.0667 0.1031 2.92% amrex::Copy() 193 0.06103 0.07193 0.07973 2.25% FabArray::setVal() 143 0.06187 0.06906 0.07943 2.25% FabArray::ParallelCopy_finish() 41 0.03536 0.05073 0.07805 2.21% Castro::reset_internal_energy(Fab) 1008 0.04932 0.0505 0.05171 1.46% FabArray::ParallelCopy_nowait() 41 0.03706 0.04221 0.04398 1.24% Castro::normalize_species() 62 0.04156 0.04233 0.04347 1.23% StateData::FillBoundary(geom) 41 0.03182 0.03648 0.0404 1.14% FillPatchIterator::Initialize 41 0.02836 0.03449 0.03681 1.04% Castro::construct_new_gravity_source() 10 0.0235 0.02599 0.02955 0.84% Gravity::interpolate_monopole_grav() 21 0.02797 0.02833 0.02908 0.82% Castro::computeTemp() 63 0.01955 0.02019 0.02096 0.59% Castro::initialize_do_advance() 10 0.01183 0.01761 0.02043 0.58% VisMF::Write(FabArray) 2 0.0139 0.01468 0.01772 0.50% FabArray::Saxpy() 20 0.01237 0.01397 0.01491 0.42% Castro::initialize_advance() 10 0.008116 0.01097 0.01425 0.40% MultiFab::contains_nan() 20 0.01005 0.01111 0.01257 0.36% FabArray::setDomainBndry() 41 0.007971 0.01061 0.01185 0.34% Amr::writePlotFile() 2 0.006952 0.01014 0.01132 0.32% Castro::construct_old_gravity_source() 10 0.007708 0.01022 0.01089 0.31% Castro::initMFs() 1 0.006939 0.007302 0.008789 0.25% StateData::define() 4 0.005763 0.005964 0.006542 0.19% Castro::construct_new_source() 50 0.005663 0.006232 0.006498 0.18% Castro::enforce_min_density() 62 0.005794 0.005997 0.006324 0.18% main() 1 0.005414 0.005913 0.00623 0.18% Gravity::get_new_grav_vector() 11 0.003055 0.004184 0.005803 0.16% Castro::swap_state_time_levels() 10 0.003349 0.004477 0.00533 0.15% Gravity::get_old_grav_vector() 10 0.001915 0.002558 0.002953 0.08% Amr::coarseTimeStep() 10 0.001405 0.002203 0.002757 0.08% Castro::finalize_do_advance() 10 0.0006346 0.001532 0.001928 0.05% Castro::buildMetrics() 1 0.001623 0.0017 0.001903 0.05% Castro::expand_state() 10 0.0005997 0.0007847 0.0009035 0.03% Amr::timeStep() 10 0.0001717 0.0002444 0.0005171 0.01% Amr::InitAmr() 1 0.0002653 0.0003027 0.0004124 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000288 0.0003044 0.0003421 0.01% Castro::clean_state() 62 0.0001472 0.0001619 0.0001762 0.00% DistributionMapping::LeastUsedCPUs() 1 6.627e-06 0.0001139 0.0001439 0.00% StateDataPhysBCFunct::() 41 9.521e-05 0.0001089 0.0001244 0.00% Castro::finalize_advance() 10 8.387e-05 9.518e-05 0.0001116 0.00% Castro::enforce_consistent_e() 1 8.541e-05 9.33e-05 0.0001089 0.00% Castro::Castro() 1 5.692e-05 7.308e-05 9.972e-05 0.00% Castro::do_old_sources() 10 5.068e-05 6.306e-05 9.058e-05 0.00% FillPatchSingleLevel 41 6.504e-05 7.294e-05 8.211e-05 0.00% Amr::FinalizeInit() 1 3.966e-06 1.456e-05 8.129e-05 0.00% Amr::writeSmallPlotFile() 1 3.74e-05 6.626e-05 7.948e-05 0.00% Castro::subcycle_advance_ctu() 10 4.173e-05 5.894e-05 7.937e-05 0.00% FabArray::ParallelCopy() 41 6.682e-05 7.383e-05 7.836e-05 0.00% Castro::construct_old_source() 50 4.707e-05 6.648e-05 7.778e-05 0.00% Castro::do_new_sources() 10 5.229e-05 5.995e-05 6.617e-05 0.00% FabArrayBase::getCPC() 41 5.047e-05 5.642e-05 6.308e-05 0.00% Amr::defBaseLevel() 1 2.787e-05 3.59e-05 5.076e-05 0.00% Castro::construct_new_gravity() 10 3.309e-05 3.98e-05 4.955e-05 0.00% Castro::construct_old_gravity() 10 3.262e-05 3.988e-05 4.815e-05 0.00% Castro::advance() 10 3.612e-05 4.24e-05 4.775e-05 0.00% Castro::apply_source_to_state() 20 3.866e-05 4.422e-05 4.746e-05 0.00% Castro::post_timestep() 10 1.555e-05 2.566e-05 3.651e-05 0.00% Castro::enforce_speed_limit() 62 2.27e-05 2.737e-05 3.553e-05 0.00% Castro::check_for_nan() 20 2.127e-05 2.484e-05 3.503e-05 0.00% FabArrayBase::CPC::define() 2 2.13e-05 2.356e-05 2.751e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.374e-05 1.787e-05 2.251e-05 0.00% Amr::initSubcycle() 1 8.839e-06 1.088e-05 2.142e-05 0.00% Gravity::swapTimeLevels() 10 8.215e-06 1.164e-05 1.705e-05 0.00% Castro::create_source_corrector() 10 8.507e-06 9.858e-06 1.181e-05 0.00% Gravity::set_mass_offset() 10 8.806e-06 9.953e-06 1.112e-05 0.00% Castro::FluxRegCrseInit 10 7.115e-06 8.372e-06 1.003e-05 0.00% Castro::computeNewDt() 9 7.823e-06 8.504e-06 9.535e-06 0.00% Amr::initialInit() 1 1.055e-06 2.089e-06 8.031e-06 0.00% Castro::retry_advance_ctu() 10 4.745e-06 5.362e-06 6.267e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.688e-06 5.122e-06 6.197e-06 0.00% Castro::computeInitialDt() 2 3.031e-06 4.028e-06 5.126e-06 0.00% Amr::InitializeInit() 1 1.908e-06 2.76e-06 4.943e-06 0.00% Castro::post_init() 1 3.18e-06 3.697e-06 4.829e-06 0.00% Castro::post_regrid() 1 2.31e-06 3.027e-06 4.123e-06 0.00% Castro::FluxRegFineAdd() 10 1.829e-06 2.289e-06 2.668e-06 0.00% Amr::init() 1 1.665e-06 2.039e-06 2.361e-06 0.00% DistributionMapping::Distribute() 1 9.12e-07 1.274e-06 1.505e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.535 3.536 100.00% Amr::coarseTimeStep() 10 3.333 3.333 3.333 94.27% Amr::timeStep() 10 3.321 3.321 3.322 93.96% Castro::advance() 10 3.304 3.305 3.305 93.49% Castro::subcycle_advance_ctu() 10 3.225 3.23 3.234 91.48% Castro::do_advance_ctu() 10 3.224 3.23 3.234 91.47% Castro::construct_ctu_hydro_source() 10 2.312 2.355 2.384 67.44% Gravity::make_radial_gravity() 21 0.3494 0.3625 0.3712 10.50% Castro::construct_old_gravity() 10 0.2128 0.2211 0.2279 6.44% Gravity::get_old_grav_vector() 10 0.2119 0.2203 0.2272 6.43% Gravity::get_new_grav_vector() 11 0.2234 0.2257 0.2269 6.42% Castro::construct_new_gravity() 10 0.1963 0.1979 0.1987 5.62% FillPatchIterator::Initialize 41 0.1603 0.1749 0.1891 5.35% Amr::init() 1 0.1848 0.1849 0.185 5.23% Castro::initialize_do_advance() 10 0.1539 0.1664 0.1736 4.91% Amr::initialInit() 1 0.168 0.1684 0.1687 4.77% FillPatchSingleLevel 41 0.1173 0.1298 0.1528 4.32% Amr::InitializeInit() 1 0.0617 0.0999 0.1369 3.87% Amr::defBaseLevel() 1 0.0617 0.0999 0.1369 3.87% Castro::expand_state() 10 0.1055 0.1179 0.1249 3.53% Castro::clean_state() 62 0.1162 0.1185 0.121 3.42% Castro::initData() 1 0.04438 0.0822 0.1182 3.34% FabArray::ParallelCopy() 41 0.07872 0.09309 0.1153 3.26% Amr::FinalizeInit() 1 0.03115 0.06846 0.1066 3.01% Castro::estTimeStep() 21 0.0243 0.0667 0.1031 2.92% amrex::Copy() 193 0.06103 0.07193 0.07973 2.25% FabArray::setVal() 143 0.06187 0.06906 0.07943 2.25% FabArray::ParallelCopy_finish() 41 0.03536 0.05073 0.07805 2.21% Castro::computeInitialDt() 2 0.002164 0.0392 0.07729 2.19% Castro::initialize_advance() 10 0.06631 0.07176 0.07685 2.17% Castro::do_new_sources() 10 0.06077 0.06636 0.07505 2.12% Castro::computeTemp() 63 0.06916 0.07099 0.07299 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04961 0.0508 0.05202 1.47% Castro::reset_internal_energy(Fab) 1008 0.04932 0.0505 0.05171 1.46% Castro::do_old_sources() 10 0.04251 0.04546 0.04803 1.36% FabArray::ParallelCopy_nowait() 41 0.03714 0.04229 0.04406 1.25% Castro::normalize_species() 62 0.04156 0.04233 0.04347 1.23% StateDataPhysBCFunct::() 41 0.03192 0.03659 0.04049 1.15% StateData::FillBoundary(geom) 41 0.03182 0.03648 0.0404 1.14% Castro::construct_new_source() 50 0.0297 0.03222 0.03582 1.01% Castro::construct_new_gravity_source() 10 0.0235 0.02599 0.02955 0.84% Gravity::interpolate_monopole_grav() 21 0.02797 0.02833 0.02908 0.82% Castro::post_init() 1 0.02859 0.02879 0.02905 0.82% Amr::writePlotFile() 2 0.02714 0.02749 0.02776 0.79% VisMF::Write(FabArray) 2 0.0139 0.01468 0.01772 0.50% Castro::post_timestep() 10 0.01587 0.01619 0.01658 0.47% Castro::apply_source_to_state() 20 0.01241 0.01401 0.01495 0.42% FabArray::Saxpy() 20 0.01237 0.01397 0.01491 0.42% Castro::check_for_nan() 20 0.01007 0.01113 0.0126 0.36% MultiFab::contains_nan() 20 0.01005 0.01111 0.01257 0.36% Castro::Castro() 1 0.01125 0.01156 0.01248 0.35% FabArray::setDomainBndry() 41 0.007971 0.01061 0.01185 0.34% Castro::construct_old_source() 50 0.007755 0.01029 0.01096 0.31% Castro::construct_old_gravity_source() 10 0.007708 0.01022 0.01089 0.31% Castro::initMFs() 1 0.006939 0.007302 0.008789 0.25% Castro::computeNewDt() 9 0.008489 0.008494 0.008502 0.24% AmrLevel::AmrLevel(dm) 1 0.005779 0.005981 0.006559 0.19% StateData::define() 4 0.005763 0.005964 0.006542 0.19% Castro::enforce_min_density() 62 0.005794 0.005997 0.006324 0.18% Castro::swap_state_time_levels() 10 0.003349 0.004477 0.00533 0.15% Castro::finalize_advance() 10 0.002966 0.003346 0.003735 0.11% Castro::buildMetrics() 1 0.001754 0.001846 0.002073 0.06% Castro::post_regrid() 1 0.00155 0.001651 0.001981 0.06% Castro::finalize_do_advance() 10 0.0006346 0.001532 0.001928 0.05% Amr::InitAmr() 1 0.0002747 0.0003135 0.0004217 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.123e-05 0.0001203 0.0001513 0.00% DistributionMapping::LeastUsedCPUs() 1 6.627e-06 0.0001139 0.0001439 0.00% Castro::enforce_consistent_e() 1 8.541e-05 9.33e-05 0.0001089 0.00% FabArrayBase::getCPC() 41 7.312e-05 7.998e-05 8.726e-05 0.00% Amr::writeSmallPlotFile() 1 3.74e-05 6.626e-05 7.948e-05 0.00% Castro::enforce_speed_limit() 62 2.27e-05 2.737e-05 3.553e-05 0.00% FabArrayBase::CPC::define() 2 2.13e-05 2.356e-05 2.751e-05 0.00% Amr::initSubcycle() 1 8.839e-06 1.088e-05 2.142e-05 0.00% Gravity::swapTimeLevels() 10 8.215e-06 1.164e-05 1.705e-05 0.00% Castro::create_source_corrector() 10 8.507e-06 9.858e-06 1.181e-05 0.00% Gravity::set_mass_offset() 10 8.806e-06 9.953e-06 1.112e-05 0.00% Castro::FluxRegCrseInit 10 7.115e-06 8.372e-06 1.003e-05 0.00% Castro::retry_advance_ctu() 10 4.745e-06 5.362e-06 6.267e-06 0.00% Castro::FluxRegFineAdd() 10 1.829e-06 2.289e-06 2.668e-06 0.00% DistributionMapping::Distribute() 1 9.12e-07 1.274e-06 1.505e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-1-gb96f6e5bd13d) finalized